mRNA_H-paniculata_contig14845.2884.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14845.2884.1
Unique NamemRNA_H-paniculata_contig14845.2884.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14845.2884.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14845contigH-paniculata_contig14845:2897..3496 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size601
Cds size303
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929180.959289-CDS-H-paniculata_contig14845:2896..31991622929180.959289-CDS-H-paniculata_contig14845:2896..3199Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14845 2897..3199 +
1691480762.57576-CDS-H-paniculata_contig14845:2896..31991691480762.57576-CDS-H-paniculata_contig14845:2896..3199Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14845 2897..3199 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929180.971843-UTR-H-paniculata_contig14845:3199..34961622929180.971843-UTR-H-paniculata_contig14845:3199..3496Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14845 3200..3496 +
1691480762.5886714-UTR-H-paniculata_contig14845:3199..34961691480762.5886714-UTR-H-paniculata_contig14845:3199..3496Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14845 3200..3496 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14845.2884.1prot_H-paniculata_contig14845.2884.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14845 2897..3199 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14845.2884.1

>prot_H-paniculata_contig14845.2884.1 ID=prot_H-paniculata_contig14845.2884.1|Name=mRNA_H-paniculata_contig14845.2884.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=101bp
SRSPSSTTLFPLLPQEGRPSRLQYKVPPSTHSKPLLPSSCVLRSLNPAFN
ANNLSAIAVEDIIRSSPLISLCGVTHESLLGTALVDRPDTFTFPTCALCP
*
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mRNA from alignment at H-paniculata_contig14845:2897..3496+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14845.2884.1 ID=mRNA_H-paniculata_contig14845.2884.1|Name=mRNA_H-paniculata_contig14845.2884.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=600bp|location=Sequence derived from alignment at H-paniculata_contig14845:2897..3496+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCCGCTCGCCTTCCAGTACTACTCTCTTTCCCCTTCTCCCCCAAGAAGG
TCGACCTTCCCGGCTCCAATACAAAGTTCCACCGTCGACCCACTCGAAGC
CATTGCTGCCTTCCTCTTGTGTCCTCCGCTCCCTGAACCCCGCTTTTAAT
GCCAATAATTTATCTGCAATCGCTGTCGAGGACATCATCAGATCAAGCCC
TCTTATATCGCTTTGCGGTGTGACACATGAATCCTTACTCGGCACAGCGC
TCGTTGACAGGCCAGACACGTTCACCTTTCCAACTTGTGCTCTCTGCCCC
TGACGACGCCATTTTCCACGACTCTTCCCGCTGCACCTCTTGGCGCCGGT
GGAGGGTTGGATAGATGCCGTCATCACGACACAATATCATGATCGAGGTG
TCGACACCGCGGATCGCTTGGAAACTGAAGAAATCTTGACGTTGAATGAT
CATCCATCGAAGAGAGATTGGTTGTTACCTCCGCCAGCGCAACTATCGTT
TGTATTCGTTTCCCGTGCCCGCTTGTGTGCTTCATCGCAGGTTTCCGCCG
CGTCCTTCACCACCTCAGTCACAGTTCCCCTCGCGGGTTATCTTGGTGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig14845:2897..3496+

>mRNA_H-paniculata_contig14845.2884.1 ID=mRNA_H-paniculata_contig14845.2884.1|Name=mRNA_H-paniculata_contig14845.2884.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at H-paniculata_contig14845:2897..3496+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCCGCTCGCCTTCCAGTACTACTCTCTTTCCCCTTCTCCCCCAAGAAGG
TCGACCTTCCCGGCTCCAATACAAAGTTCCACCGTCGACCCACTCGAAGC
CATTGCTGCCTTCCTCTTGTGTCCTCCGCTCCCTGAACCCCGCTTTTAAT
GCCAATAATTTATCTGCAATCGCTGTCGAGGACATCATCAGATCAAGCCC
TCTTATATCGCTTTGCGGTGTGACACATGAATCCTTACTCGGCACAGCGC
TCGTTGACAGGCCAGACACGTTCACCTTTCCAACTTGTGCTCTCTGCCCC
TGAAGCCGCTCGCCTTCCAGTACTACTCTCTTTCCCCTTCTCCCCCAAGA
AGGTCGACCTTCCCGGCTCCAATACAAAGTTCCACCGTCGACCCACTCGA
AGCCATTGCTGCCTTCCTCTTGTGTCCTCCGCTCCCTGAACCCCGCTTTT
AATGCCAATAATTTATCTGCAATCGCTGTCGAGGACATCATCAGATCAAG
CCCTCTTATATCGCTTTGCGGTGTGACACATGAATCCTTACTCGGCACAG
CGCTCGTTGACAGGCCAGACACGTTCACCTTTCCAACTTGTGCTCTCTGC
CCCTGA
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