mRNA_H-paniculata_contig1484.2882.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig1484.2882.1 vs. uniprot
Match: A0A5D6YB57_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YB57_9STRA) HSP 1 Score: 201 bits (511), Expect = 2.060e-58 Identity = 112/262 (42.75%), Postives = 165/262 (62.98%), Query Frame = 1 Query: 10 EAEKWRAAMEEEWEALVKNGTWESEDLGRLPAGRKAIRTKWIFKRKRKEDGNMARYKARLLAQGFSQVEGEDFFETSAPVARMSTLRTVFSVAAEHDFELEGMDVDAAYLHAPVEEELFVKLPPEFSPFSLDVPF---VRRLRKSLYGLKQSGRNWNNTLDNFLVGIGLNRSTTHPCLYFSRDDTGETNLLVAVYVDDLVIA-GRREKVDEFKHNISQRFRMKDLDSLSRVLAIEVQRDRPNGSITISQGSYIHEVLKGYGL 783 +A KW+ A E E+E+L KN TWE L LP GRKAI +KW+FK K +G + RYKARL+A+GF Q G DF ET APVA+ +++R + S+AA++ L MDV A+L+ +EEE+++K P F +D + V +L+++LYGLKQS R WN T+D F+ IG + T C+Y RDD + + V +YVDDL++A + + K +S+RF M DL L L +EV+RD +G +++ Q ++H VL +G+ Sbjct: 5 DASKWKEACESEFESLCKNKTWE---LVPLPRGRKAISSKWVFKVKETVEGLIERYKARLVAKGFLQKYGVDFEETFAPVAKFASIRIILSIAAQYKLVLHQMDVKTAFLNGLLEEEIYMKQPNGF----VDAKYPDHVCKLKRALYGLKQSPRMWNQTIDEFMRKIGFTKCETDHCVYVKRDD--KAMIFVVLYVDDLILACNDTDLLAATKRALSERFEMSDLGELKYCLGMEVERDDKSGDVSMRQTKFLHSVLAKFGM 257
BLAST of mRNA_H-paniculata_contig1484.2882.1 vs. uniprot
Match: H3H8P6_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H8P6_PHYRM) HSP 1 Score: 193 bits (490), Expect = 9.710e-57 Identity = 102/260 (39.23%), Postives = 167/260 (64.23%), Query Frame = 1 Query: 10 EAEKWRAAMEEEWEALVKNGTWESEDLGRLPAGRKAIRTKWIFKRKRKEDGNMARYKARLLAQGFSQVEGEDFFETSAPVARMSTLRTVFSVAAEHDFELEGMDVDAAYLHAPVEEELFVKLPPEFSPFSLDVP-FVRRLRKSLYGLKQSGRNWNNTLDNFLVGIGLNRSTTHPCLYFSRDDTGETNLLVAVYVDDLVIAGRREKV-DEFKHNISQRFRMKDLDSLSRVLAIEVQRDRPNGSITISQGSYIHEVLKGYGL 783 +A KW+ A + E ++L+KN TW D+ LP GRKAI +W+F+ K + G + R+KARL+A+GFSQ D+ ET APVA+ +++R V S+AA++ +L MDV A+L+ ++E++++ P + D P V +L++SLYGLKQS R WN T+D+F++ +G + + C+Y RD G+ + VA+YVDDLV+A +++ + KH +S+RF M DL L L +E++ D +G +T+ Q ++ +L +G+ Sbjct: 35 DAVKWKEACDSECDSLLKNDTW---DVVPLPKGRKAIGCRWVFRVKENQAGEIERFKARLVAKGFSQKYDIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGY--VDEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD--GQDMIFVALYVDDLVLASSNDELLESTKHALSKRFEMTDLGELEYFLGMEIKNDHGSGKVTVRQTKFLKSILTKFGM 287
BLAST of mRNA_H-paniculata_contig1484.2882.1 vs. uniprot
Match: H3H9Y1_PHYRM (CCHC-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H9Y1_PHYRM) HSP 1 Score: 199 bits (507), Expect = 1.230e-56 Identity = 105/260 (40.38%), Postives = 169/260 (65.00%), Query Frame = 1 Query: 10 EAEKWRAAMEEEWEALVKNGTWESEDLGRLPAGRKAIRTKWIFKRKRKEDGNMARYKARLLAQGFSQVEGEDFFETSAPVARMSTLRTVFSVAAEHDFELEGMDVDAAYLHAPVEEELFVKLPPEFSPFSLDVP-FVRRLRKSLYGLKQSGRNWNNTLDNFLVGIGLNRSTTHPCLYFSRDDTGETNLLVAVYVDDLVIAGRREKV-DEFKHNISQRFRMKDLDSLSRVLAIEVQRDRPNGSITISQGSYIHEVLKGYGL 783 +A KW+ A + E ++L+KN TW D+ LP GRKAI +W+F+ K + G + R+KARL+A+GFSQ G D+ ET APVA+ +++R V S+AA++ +L MDV A+L+ ++E++++ P + D P V +L++SLYGLKQS R WN T+D+F++ +G + + C+Y RD G+ + VA+YVDDLV+A +++ D KH +S+RF M DL L L +E++ DR +G +T+ Q ++ +L +G+ Sbjct: 294 DAVKWKEACDSECDSLLKNDTW---DVVPLPKGRKAIGCRWVFRVKENQAGEIERFKARLVAKGFSQKYGIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGY--VDEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD--GQDMIFVALYVDDLVLASSNDELLDSTKHALSKRFEMTDLGELEYFLGMEIKNDRDSGKVTVRQTKFLKSILTKFGM 546
BLAST of mRNA_H-paniculata_contig1484.2882.1 vs. uniprot
Match: A0A182GIT5_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GIT5_AEDAL) HSP 1 Score: 198 bits (504), Expect = 1.250e-56 Identity = 114/271 (42.07%), Postives = 166/271 (61.25%), Query Frame = 1 Query: 1 KDPEAEKWRAAMEEEWEALVKNGTWESEDLGRLPAGRKAIRTKWIFKRKRKEDGNMARYKARLLAQGFSQVEGEDFFETSAPVARMSTLRTVFSVAAEHDFELEGMDVDAAYLHAPVEEELFVKLPPEFSPFSLDVPFVRRLRKSLYGLKQSGRNWNNTLDNFLVGIGLNRSTTHPCLYFSRDDTGETNLLVAVYVDDLVIA-GRREKVDEFKHNISQRFRMKDLDSLSRVLAIEVQRDRPNGSITISQGSYIHEVLKGYGLTSVE--EYP 804 K PEAE W+AAM++E +L +NGTW+ DL P GRKA+ KWIFKRK EDGN+ RYKARL+AQGF+Q G D+ E APV R T R + +VA++ ++ DV AYL+ +EE +F++ PP + + D V L+KSLYGLKQ+G WN D L + +S PCLY R+ G T L++ YVDD+VIA E+ +E +++ F++ L +S L I++ R+ S+ SQ +YI ++L+ +G+ + +YP Sbjct: 2 KGPEAELWKAAMDDEMTSLRENGTWQLTDL---PPGRKAVGCKWIFKRKLDEDGNVVRYKARLVAQGFTQKFGTDYDEVFAPVVRQVTFRVLLTVASQRGMVVKHADVKTAYLNGELEESIFMRQPPGYEDENRDA--VCSLQKSLYGLKQAGYVWNKKFDQVLKRMKFQQSKNDPCLYVRRNGKGYTYLVI--YVDDMVIACNDDEEYEEIIKTLNRHFKVTSLGDISHFLGIKINRNEKGFSL--SQQTYIKQILEQFGMNQAKPSKYP 263
BLAST of mRNA_H-paniculata_contig1484.2882.1 vs. uniprot
Match: W7TJ26_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ26_9STRA) HSP 1 Score: 201 bits (510), Expect = 4.550e-56 Identity = 111/255 (43.53%), Postives = 161/255 (63.14%), Query Frame = 1 Query: 25 RAAMEEEWEALVKNGTWESEDLGRLPAGRKAIRTKWIFKRKRKEDGNMARYKARLLAQGFSQVEGEDFFETSAPVARMSTLRTVFSVAAEHDFELEGMDVDAAYLHAPVEEELFVKLPPEFSPFSLDV-PFVRRLRKSLYGLKQSGRNWNNTLDNFLVGIGLNRSTTHPCLYFSRDDTGETNLLVAVYVDDLVIAGR-REKVDEFKHNISQRFRMKDLDSLSRVLAIEVQRDRPNGSITISQGSYIHEVLKGYGL 783 + A + E++A +KNGTWE L LP G + I + W+ KR + G + R KAR +A+G+SQ G D+ T APVA M+T+R V ++A D EL+ MDVD AYL + +EE++++K PP + + + V RLRKSLYGLKQSGRNW+ +D + G GL+ S PCLY +GE L++ +YVDDL+I R D+FK +IS+ F MKDL L +L + ++R+R N ++ ISQ YI +L +G+ Sbjct: 210 KKAKDAEYQAHMKNGTWE---LTPLPKGERCISSGWVETDKRDQKGVIVRRKARFIAKGYSQEFGYDYLHTYAPVASMTTIRLVLALACILDLELDNMDVDTAYLQSDLEEKVYIKQPPGYEKYGPNGGELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGLHPSYADPCLYVKFASSGEI-LVIVLYVDDLIIGSNSRTMTDKFKQDISREFSMKDLKELDWILGMGIKRNRENRTMEISQTGYIGMMLNKFGM 460
BLAST of mRNA_H-paniculata_contig1484.2882.1 vs. uniprot
Match: H3H934_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H934_PHYRM) HSP 1 Score: 191 bits (484), Expect = 5.980e-56 Identity = 101/255 (39.61%), Postives = 165/255 (64.71%), Query Frame = 1 Query: 25 RAAMEEEWEALVKNGTWESEDLGRLPAGRKAIRTKWIFKRKRKEDGNMARYKARLLAQGFSQVEGEDFFETSAPVARMSTLRTVFSVAAEHDFELEGMDVDAAYLHAPVEEELFVKLPPEFSPFSLDVP-FVRRLRKSLYGLKQSGRNWNNTLDNFLVGIGLNRSTTHPCLYFSRDDTGETNLLVAVYVDDLVIAGRREKV-DEFKHNISQRFRMKDLDSLSRVLAIEVQRDRPNGSITISQGSYIHEVLKGYGL 783 + A + E ++L+KN TW D+ LP GRKAI +W+F+ K + G + R+KARL+A+GFSQ G D+ ET APVA+ +++R V S+AA++ +L MDV A+L+ ++E++++ P + D P V +L++SLYGLKQS R WN T+D+F++ +G + + C+Y RD G+ + VA+YVDDLV+A +++ + KH +S+RF M DL L L +E++ DR +G +T+ Q ++ +L +G+ Sbjct: 1 KEACDSECDSLLKNDTW---DVVPLPKGRKAIGCRWVFRVKDNQAGEIERFKARLVAKGFSQKYGIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGY--VDEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD--GQDMIFVALYVDDLVLASSNDELLESTKHALSKRFEMTDLGELEYFLGMEIKNDRDSGKVTVRQTKFLKSILTKFGM 248
BLAST of mRNA_H-paniculata_contig1484.2882.1 vs. uniprot
Match: W8AQS8_CERCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Ceratitis capitata TaxID=7213 RepID=W8AQS8_CERCA) HSP 1 Score: 195 bits (496), Expect = 1.030e-55 Identity = 108/258 (41.86%), Postives = 161/258 (62.40%), Query Frame = 1 Query: 13 AEKWRAAMEEEWEALVKNGTWESEDLGRLPAGRKAIRTKWIFKRKRKEDGNMARYKARLLAQGFSQVEGEDFFETSAPVARMSTLRTVFSVAAEHDFELEGMDVDAAYLHAPVEEELFVKLPPEFSPFSLDVPFVRRLRKSLYGLKQSGRNWNNTLDNFLVGIGLNRSTTHPCLYFSRDDTGETNLLVAVYVDDLVIA-GRREKVDEFKHNISQRFRMKDLDSLSRVLAIEVQRDRPNGSITISQGSYIHEVLKGYGL 783 A+ W AM+ E+EAL+KN TWE L LP G+K +R KWIF KR +DGN+ R+KARL+A+G SQV G ++ ET +PV R +T+R +F++AAE+ L MDV AYL++ + E++++ P F + +L+K+LYGLKQSGR WN LD L IG + + PC+Y + ++AVYVDDL+IA ++ KH ISQ ++ D + L++E++RD G+I ISQ +I ++L+ Y + Sbjct: 21 ADNWYEAMKVEYEALLKNKTWE---LAELPKGQKRVRNKWIFAIKRNKDGNVERFKARLVAKGCSQVYGVNYTETFSPVVRYNTIRMIFALAAEYGLHLHQMDVSTAYLNSELVEDIYMCQPEMFVDQRFP-DYCLKLKKALYGLKQSGRQWNIKLDTILKRIGFKQCESEPCVYVKHKVKQMS--IIAVYVDDLLIACSDYNNMNNIKHMISQEVQVVDKGPVQHFLSMEIERDGETGAIAISQQGHIRKLLREYNM 272
BLAST of mRNA_H-paniculata_contig1484.2882.1 vs. uniprot
Match: W7TII5_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TII5_9STRA) HSP 1 Score: 190 bits (483), Expect = 1.220e-55 Identity = 104/239 (43.51%), Postives = 152/239 (63.60%), Query Frame = 1 Query: 58 VKNGTWESEDLGRLPAGRKAIRTKWIFKRKRKEDGNMARYKARLLAQGFSQVEGEDFFETSAPVARMSTLRTVFSVAAEHDFELEGMDVDAAYLHAPVEEELFVKLPPEFSPFSLD-VPFVRRLRKSLYGLKQSGRNWNNTLDNFLVGIGLNRSTTHPCLYFSRDDTGETNLLVAVYVDDLVIAGR-REKVDEFKHNISQRFRMKDLDSLSRVLAIEVQRDRPNGSITISQGSYIHEVL 768 ++NGTW+ L LP G + I + W+ KR ++G + R KAR +A+G+SQ G D+ T APVA ++T+R + ++A D EL+ MDVD AYL + +EE+++VK PP + + V RLRKSLYGLKQSGRNW+ +D + G G + S+ PCLY +GE L++ +YVDDL+IAG R+ VD+FK IS+ MKDL L +L + ++R+R + ISQ +YI +L Sbjct: 1 MRNGTWK---LTPLPKGERCISSGWVETDKRDQNGIIVRRKARFIAKGYSQEYGYDYLNTYAPVASITTIRLILAIACILDLELDNMDVDTAYLQSDLEEKIYVKQPPGYEQCGPNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHSSSADPCLYVKFGSSGEM-LVIVLYVDDLIIAGNSRDMVDDFKQAISKEISMKDLKELDWILGMAIKRNREKRFMEISQTAYIDMML 235
BLAST of mRNA_H-paniculata_contig1484.2882.1 vs. uniprot
Match: W7TIM1_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIM1_9STRA) HSP 1 Score: 202 bits (513), Expect = 1.550e-55 Identity = 111/255 (43.53%), Postives = 162/255 (63.53%), Query Frame = 1 Query: 25 RAAMEEEWEALVKNGTWESEDLGRLPAGRKAIRTKWIFKRKRKEDGNMARYKARLLAQGFSQVEGEDFFETSAPVARMSTLRTVFSVAAEHDFELEGMDVDAAYLHAPVEEELFVKLPPEFSPFSLD-VPFVRRLRKSLYGLKQSGRNWNNTLDNFLVGIGLNRSTTHPCLYFSRDDTGETNLLVAVYVDDLVIAGR-REKVDEFKHNISQRFRMKDLDSLSRVLAIEVQRDRPNGSITISQGSYIHEVLKGYGL 783 R A + E++A +KNGTWE L LP G + I + W+ KR ++G + R KAR +A+G+SQ G D+ T APVA ++T+R + ++A D EL+ MDV+ AYL + +EE+++VK P + + L+ V RLRKSLYGLKQSGRNW+ +D + G G + S+ PCLY +GE L++ +YVDDL+I RE VD+FK IS+ F MKDL L +L + ++R+R + ISQ +YI VL +G+ Sbjct: 219 RKARDAEYQAHMKNGTWE---LTTLPKGERCISSGWVDSDKRDQNGVIVRRKARFIAKGYSQEFGYDYLHTYAPVASITTIRLILAIACILDLELDNMDVETAYLQSDLEEKVYVKQPIGYEQYGLNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEM-LVIVLYVDDLIITSNSREMVDKFKQAISREFSMKDLKELDWILGMAIKRNREKRVMEISQTAYIDMVLNKFGM 469
BLAST of mRNA_H-paniculata_contig1484.2882.1 vs. uniprot
Match: W7TCB8_9STRA (Gag-pol polyprotein n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TCB8_9STRA) HSP 1 Score: 193 bits (491), Expect = 3.140e-55 Identity = 108/239 (45.19%), Postives = 152/239 (63.60%), Query Frame = 1 Query: 58 VKNGTWESEDLGRLPAGRKAIRTKWIFKRKRKEDGNMARYKARLLAQGFSQVEGEDFFETSAPVARMSTLRTVFSVAAEHDFELEGMDVDAAYLHAPVEEELFVKLPPEFSPF-SLDVPFVRRLRKSLYGLKQSGRNWNNTLDNFLVGIGLNRSTTHPCLYFSRDDTGETNLLVAVYVDDLVIAGR-REKVDEFKHNISQRFRMKDLDSLSRVLAIEVQRDRPNGSITISQGSYIHEVL 768 +KNGTWE L LP G + I + W+ KR ++G + R KAR +A+G+SQ G D+ T APVA ++T+R V ++A D EL+ MDV+ AYL + +EE+++VK PP + + S V RLRKSLYGLKQSGRNW+ +D + G G + S+ PCLY +GE L++ +YVDDL+I RE V +FKH IS+ F MKDL L +L + ++RDR + ISQ +YI +L Sbjct: 1 MKNGTWE---LTPLPKGERCISSGWVETDKRDQNGVIVRRKARFIAKGYSQEFGYDYLHTYAPVASITTIRLVLALACILDLELDNMDVEPAYLQSDLEEKVYVKQPPGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEI-LVIVLYVDDLIITSNSREMVGKFKHAISREFSMKDLKELDWILGMAIKRDRGKRVMEISQTAYIDMML 235 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1484.2882.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1484.2882.1 >prot_H-paniculata_contig1484.2882.1 ID=prot_H-paniculata_contig1484.2882.1|Name=mRNA_H-paniculata_contig1484.2882.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=271bp KDPEAEKWRAAMEEEWEALVKNGTWESEDLGRLPAGRKAIRTKWIFKRKRback to top mRNA from alignment at H-paniculata_contig1484:245..1057- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1484.2882.1 ID=mRNA_H-paniculata_contig1484.2882.1|Name=mRNA_H-paniculata_contig1484.2882.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=813bp|location=Sequence derived from alignment at H-paniculata_contig1484:245..1057- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1484:245..1057- >mRNA_H-paniculata_contig1484.2882.1 ID=mRNA_H-paniculata_contig1484.2882.1|Name=mRNA_H-paniculata_contig1484.2882.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1626bp|location=Sequence derived from alignment at H-paniculata_contig1484:245..1057- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |