mRNA_H-paniculata_contig1483.2877.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1483.2877.1
Unique NamemRNA_H-paniculata_contig1483.2877.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1483.2877.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1483contigH-paniculata_contig1483:18793..25058 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-08_006110.1
Exons3
Model size775
Cds size570
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1483.2877.1prot_H-paniculata_contig1483.2877.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1483 20109..25058 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929179.5881445-UTR-H-paniculata_contig1483:18792..189101622929179.5881445-UTR-H-paniculata_contig1483:18792..18910Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1483 18793..18910 +
1691480762.0219624-UTR-H-paniculata_contig1483:18792..189101691480762.0219624-UTR-H-paniculata_contig1483:18792..18910Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1483 18793..18910 +
1622929179.6047728-UTR-H-paniculata_contig1483:20022..201081622929179.6047728-UTR-H-paniculata_contig1483:20022..20108Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1483 20023..20108 +
1691480762.0360944-UTR-H-paniculata_contig1483:20022..201081691480762.0360944-UTR-H-paniculata_contig1483:20022..20108Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1483 20023..20108 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929179.6225731-CDS-H-paniculata_contig1483:20108..204891622929179.6225731-CDS-H-paniculata_contig1483:20108..20489Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1483 20109..20489 +
1691480762.0534577-CDS-H-paniculata_contig1483:20108..204891691480762.0534577-CDS-H-paniculata_contig1483:20108..20489Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1483 20109..20489 +
1622929179.638326-CDS-H-paniculata_contig1483:24869..250581622929179.638326-CDS-H-paniculata_contig1483:24869..25058Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1483 24870..25058 +
1691480762.0617821-CDS-H-paniculata_contig1483:24869..250581691480762.0617821-CDS-H-paniculata_contig1483:24869..25058Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1483 24870..25058 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1483.2877.1

>prot_H-paniculata_contig1483.2877.1 ID=prot_H-paniculata_contig1483.2877.1|Name=mRNA_H-paniculata_contig1483.2877.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=190bp
MDPSVRQERYTAKDVERVKEAGRKMTVRGVQGFAFGGALGWFATRSLQAS
QKMHPSNALLQRLPKINKNHIVVITLANAVMAAYVGISMEAAKRMSSLQE
IFQNRDAAKGDPRRDTVTEGTSDPPEPVFEDAASRSASNDTERAPSKGRR
TVPRIVPEYNKYQAQSHLKQVNEDSHARRVAAIEAKKQER
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mRNA from alignment at H-paniculata_contig1483:18793..25058+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1483.2877.1 ID=mRNA_H-paniculata_contig1483.2877.1|Name=mRNA_H-paniculata_contig1483.2877.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6266bp|location=Sequence derived from alignment at H-paniculata_contig1483:18793..25058+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAAAAAATCGTCGAAATATGAAAAAAAACCGTTACATCCTGCAACAGTT
CAGGGGAAGGTTTTGAGGTTTGGCATGTACATCATTGGAGCTCCCATCGT
GGTAGCACGGTGCTGAAGGTTAGCCCCATCTAGCTCTCGCTCGTGCTACT
CCTTCACCTTTTCCTTGCTTTAACTGCCTGATTTTTCCTTGGCGTTATTA
AGTTACAACATAGTACAGACAGTACGTAGTACAACCAGTACAGTGACAAA
TGACACAGAAGCAGTCAGTACTGTAGAGGTCGATGCAAATAACTCCTAGA
GTGCTCAAGAGTCCCCTCAGTGTACAACGCAGTGACGTACCATAGAGTGA
AGGTAGGACTTGTACAATTCTAGCACAAAATCCGGACAAGAAACAGGCAT
GTCTTTTCGTTATCTTCGTTTCTTCCATCTGTCTCTCTTGTGTCTCGTCG
CACTTCCTCCTCCTAGTTGTACTAGATGCTGTGTGTGTGCTACTGCACTG
TCTGCACTGCCGACTACAACTTTACTACAACTTTCTCGGTACTGAAGCTT
ACTCAAGTGAGCTCAGTATTCATGGTATTTACGCATATAGAAACGCGCCG
CTTTTACGGCTCTATCGTGTTCCCTGTTGTGGTCCTCTCGTTTTTCCTCT
GCTCTGCGATAGTAAATTCACCCTATAGTACCATTACTAGATTGAATGTG
TCGTGCTGAGACTGGCTGCACTGTATTGTGTATCGTTTATGTGCCGTCGG
TGCCTTACCGGTAAATACTCGAATTTCATTCCGCTAACTCAAATATCTAT
TGCTAACCTGTTGCAGATAGACTCGATTCATTGAGGAGGAGTGTGCACTA
GGTGCGTGCGACTTTCTGATGACGAAATATCTCCCACTAACTAGACGCCA
GTGTGCGCAACCCGATATTTAGAGGGAACTACCCCGCTCACTGTGGTCAC
CGGGACGCCCGGCACCATACAGTACACCCCCACCCCGTTTGTGCCCGACA
TACCTAGAATGCACAACTAAAAAAATGCGGAACGTGGAATACAAATACTT
CCGTCGAAGTCCCCATCACCGATCTATTTCAACATGGGACACAGATCTCT
CTATGGCATGTCATACTTTTGAGTACCTCCGCGTTGCTGTGTATATGATC
ACTAATGTCTAATAATACTATGGTGCCACAACTGCAGGTGCAGTCTAACT
CAAATCGTACGCTTTTGTCGCGCCGTACAGGCTTCACCCTCGTGCGGTCG
AATAGTGAACTTTTTGGAGAACACAAAACGACACACATACTTCGCCGGAA
GCGGTGACAGTTCGTCATGGACCCGTCCGTGCGCCAAGAACGGTATACGG
CCAAGGATGTGGAAAGGGTTAAGGAAGCAGGAAGAAAAATGACTGTGCGG
GGAGTGCAAGGCTTCGCGTTCGGCGGCGCGCTCGGGTGGTTTGCGACGCG
GTCTCTTCAAGCTTCGCAAAAGATGCACCCGTCAAATGCGCTTCTGCAGA
GATTACCGAAAATCAACAAGAACCACATCGTCGTCATCACCCTTGCGAAC
GCGGTTATGGCGGCGTACGTTGGCATCAGTATGGAGGCTGCAAAGCGGAT
GTCATCCTTGCAAGAAATATTTCAAAACCGCGACGCCGCCAAGGGAGACC
CAAGGCGTGACACAGTAACGGAGGGCACATCTGATCCACCTGAACCGGTA
TGATGCAATTGTTTTTTCATCTATTCGATGTGCCGGAGTGTTGGGTTTTT
CACCGCTCTTAGGGTGAGGCCTATTGGGCAAAGCCAATGGTATGCTATAT
AAGACAATCTTCCCGTTATGAGTTCTTTGACGAATCTGTATTTTTTTGTC
AGCTCTAGTATCTTTGCTCTCCAAACGCAGCTTGATAGTTTTTTAGAATC
ACAACAAGAACGTTTTGTCGCACTTTTCTCGCGCCAACAGCAAAGTGAGA
AAATGCAAGTGTAGATTTGAGAAGCCTGTTATGTCAGATTTTCTGAACGA
TGTTATGTCACAGGGTATCATTCGTGCATTAGTCGTGATCCAAGTACGGT
GAAGTCACTTCTGAGTAGGTCAGTTGCGCAGCTTGCAAGGAGGTTTGGGT
CTATTTGGCCACAATCAAAAACGAGACAAAGTTATTTTGCCATTATCCTC
CCGATCAACCCACGAGAGATGAACAACGAATAACTTCCTAAAAAGCATGT
CACCTACACGATCCAACCACCATCGCGTACAATGCAAGCCACCGGCACAA
CCCTGGAGAACAACAAATCCATAGCAGCAGTAACCGCGCAGCTGTATGTT
TCATGATTCCACCGTTGAGTACAGCGTGCGGGAGTCATGCAACCGATAGA
GCGATGATCTGTGTAGAGTCCGCTTCAAGGGGTGGCGCTGTCACACGGAT
TATTGTGCGGGCGCTATCAGCGCCTGGGAGGTTCCGCATCTCGTTCTGTC
TCGACTAAAAAAGTGGTCAAACTTTCACCCGTTACAGCAGTCAGTGAACG
GATTTTCGTGTGAGAAGCTCTGTCGACATTGTAGCCGAACGGAAAACCCA
GCAGCCGGCTAGAAGAGTTACGTACAACGTAGCCAGCCTCAGCGTTCCAA
CATCCCGTTGCAATCTAATAGTGATCTAAAGCTCAGCTACAATCGGTCGT
TGTCACAGCAAGTGAATGGGCTGGTTCTCTTTGTTGAATCTATTTCACCA
CAATAACAGACTTTACTGGGTTGCTACGGCATGATGGAGAAACGCATGAC
ATTATTCCATGCAGCAGCATCAAGATGCGTTTATCATGGGTCTAATCACA
ACATAGACACCTGGCTTGGCTCGGTCCTGTGTCGTTCTCAAATTTGTACC
ATGGTGGTCTCATGACGGAATTGTGTCTGAATGCGCTTAGAGGACCGTTG
CAGTAACTCCAGGGTGGAATGCGCCCCTATAGGCGGCTTCACAACTCTAC
AGTATATTAATGGACTACTAATCTGCGTTGTATCGTCAGGACAGCGTCCC
GGTTTCCAAGTTGGACATCGCGTAGTCAAGTGTTTTTCTTTCTGGCTGAA
AAGTGGCAGTGATCTATGCAATTTTGACCGTTTCCACCAGAGCCAGGGCA
GCTGTGTGCCTCGACATTCGCCAACGGACGTGTATATGTGTACTTGTAGA
TACGGTTGTGGCTAATGTGTAGGTTCGGCAGTTTCTATCCGCAATTGAAG
ACAACTGGTCGATACAAGCCAAAGCATATATCCTGAAGCAGGATACGATC
CTTGGCGCCATCTCTGGAAGATGACTTTTTTGTATTAGTTAGCAGTATGT
AGTTCGGGGCTAAATGCGTCTAAATATGCCACCAGCGGCTGAAAATTTAA
CCCCGCGCTTGTAGGCATCACATCACTCTCGAAGCCATCCTCTCAATTCA
AACCAGGCTGTTTGGAGCACGCAGGAGTGTTTTTTACACGAATTTGTGCC
CGTTTTGAAACGATCGTCTATTTTACGAACACAGCTGAAAAATTTCGTCA
TTCGGTGGTATGCCGGGCCACATCCCATACTAGTATTAGGGGTGCATCTA
AGCCCGATTCTAAGCCGATTTCTGGTGACAACGACCACGCAGTAAAGCGC
CGAATAAAGAAAGAAAAAGTGTGTATCCCCTGACAGATAACGCCACCTAC
ATCCCGCAAAGTAATTGTATTCAATGTCGGGGCTTCCACGCACTTGTAAC
TTGAGTTACTTGATACAGGTTGGAAACTGGCTCGTGAGACTCAACAGACA
CTTGGGTATGTGCCTAATCTAGGGCTTGATCTTGTTGGAAGTTTAATTGC
GTTATGAGAATCCCAGACGCCCCAATAAATAGTAATTTTTCTACTATTTC
CTCTATGAAGATGTTTTTTCTTCAAGACTTCAAAAATACATCAAGATGAA
CCCCTAACTGTGGTTTTCGTGCACACGATGCAAAAAATCGTACCCCCATC
GACGACCTGACTGACGAGTATTTTCATTCACAAGATAGCCTATCAACACA
AAAAACACCCCAAACTACTCGAATTTAAAGAGGCCCATCAACACCAAAAA
AGTACCCAAAACTACTCGAATTTAGAGTCCGGGAGAGGACATCCTTTCAA
ATATAATTATTTTTCACACGTTTGGCCGTTAGGGAACGATTGGGTGGTCG
TAGGGGCATAGTTAGCGTTGCATATTACAAAAGTTGTAGCTCGTCGTTGT
GACCAGCATTCTCAGGGTCCCAAAGCACTCGAAACGTAGCTTTGCTCGGC
CTTTTCCCGTCTAGCTGTGAGCTGCAGTAGAATAAGATAAAAGGGGACAA
CATGGTTAACACAGCAGCAGCAGCAGCTCTGCTCCTTCGCGCATCCTACG
CCGAACTGCCCTCCAATCCACGACGTTACTAAGGAGCACTTTGGTTTATT
GCCTAATATGACCGAGAAAGGCAAGGGCAACGAACGATCGAAACTGGCGC
GAAAAAGAACGCTTCTAAAGGTTAGAGACGAATACCTTGCGCGTACTGGC
ATGACCGTGTCGGAAGCGGTCTACTCGGACTGGTGTGGGATGCCGTGCAT
GCTGTGTGCGCACTCGCTACTGCTGTTGCACTCAGAGGCAGTAAGAGGCA
GCTCTTGCCTGTGGAGAAGTCTCTCTGTTCTGTCTGTAGCTCCTCAGCCT
TTCTGATGGCTATTTCGGGGTTGTTCATATTTTGGTATTTTTGGGATATC
CTGCCTCTTTTGGGACTATTCCTTTTTTAGTTTCTTTAGCTTACGCTGAG
TCTCTCGGTGTTTTTCATTATTAAATAAATTGTTATCAGGTGACGTTGGG
TCTTTCGATGATTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTTTTGGGTAACGTGAACTTAATTTTTTTTC
TTATTCGGCCCAAACCCTCTAAAACGTCGGCAATACATACGTGGTCTTTG
CGACACAATTACCTCACTATAGAGGACTCAGGTGCACCCCTAACAGTGGA
AGAAACTGAGGAACGCGCCGTTGAGCAAAACATAAACCTGTGGGACAAAA
CATTACTAAAAAAATTAAATGGAGCTTCTATACTTTTCACGATCTTGCCA
CAAATGTTTACACATATATCTATATATATTTAATTAATTTTTTTTTTTCA
TTCTATAGTCATAATTTTGTCATCGACCAGAAGGAGACTGCAGATCAAGT
ATACCGTGTTGAAGGAGCCATATCTACATGTCAGGGTGAGGTCATAATGC
AGCTTGGCGTTATGCAGTATACTTTTGATTCTAGAGTACCACCTTGTCAT
TTGAATCATAGGTCTTATCAGCGACATCATTATGAAAGGAGAGTTCATCC
TCCACCGAAAATTGTGGAAAAGTCCCTTTGTTGTAGGATATTGTCATTAA
TAGTACACCTGAATGAATTTCGTCCTCTATTTGATGACAGTCACGTCGCT
GTACGACGCGCGGGTCGAATTTTTTGGCAACTACATGGAGGTGTTCTCGT
TTTATGTAACAGGTATTGGTATTGCTGGAATTTTTTCACGATGGTTATGG
CGTAGCTCGGTTATTGTGAACATATGTATACGACGAAACACACCATAGTC
CACATTTTTTAGTTTTTTTCCAGCGACTTTCCAGGTTGCCTTGCCGACTT
TATCCTGAACTTGAGGTGGACGCGTGATACTGTGGCACGGCTCGTACCTG
CTGTGTATGTTGCACACGCTTGGTTGACACTCACCTGTACTTATGAACGG
TTGTTGCATATCTTCTCCGTCAACTTTGCCATATTTTTTGTTTTAAGGCT
ACTGCAATATTTCTCTCTCTTTCTTTTACTGCGGGTGTGAGTGGAGCGGG
TGCATGCAATCGAAATCTTACGTCTGCCGGGTACGGAGGAAAGACATTAT
ACTGCACAGACCGACCTACCGCTACTATTCCATACTCGGTGTTTCTGTGA
TAAAACACGCGCTGTCAATACGATAGTACCTGTCCTCTGAACCAGGTTGT
AATCGCACCTGCTCTCTGTATGCGCCACCTCGTTCCATTCTGTATTGTGT
GCAACGTCTGGCGGTTTGTGATATCAGGTGTTCGAGGACGCCGCTTCACG
CTCTGCCTCAAACGACACGGAGCGTGCCCCCAGTAAAGGTCGTAGGACCG
TTCCTAGAATTGTTCCTGAGTACAACAAATACCAAGCACAGTCGCACCTA
AAACAGGTCAATGAAGACAGCCATGCAAGGAGAGTTGCGGCAATAGAGGC
CAAGAAACAAGAGCGG
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Coding sequence (CDS) from alignment at H-paniculata_contig1483:18793..25058+

>mRNA_H-paniculata_contig1483.2877.1 ID=mRNA_H-paniculata_contig1483.2877.1|Name=mRNA_H-paniculata_contig1483.2877.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1140bp|location=Sequence derived from alignment at H-paniculata_contig1483:18793..25058+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACCCGTCCGTGCGCCAAGAACGGTATACGGCCAAGGATGTGGAAAG
GGTTAAGGAAGCAGGAAGAAAAATGACTGTGCGGGGAGTGCAAGGCTTCG
CGTTCGGCGGCGCGCTCGGGTGGTTTGCGACGCGGTCTCTTCAAGCTTCG
CAAAAGATGCACCCGTCAAATGCGCTTCTGCAGAGATTACCGAAAATCAA
CAAGAACCACATCGTCGTCATCACCCTTGCGAACGCGGTTATGGCGGCGT
ACGTTGGCATCAGTATGGAGGCTGCAAAGCGGATGTCATCCTTGCAAGAA
ATATTTCAAAACCGCGACGCCGCCAAGGGAGACCCAAGGCGTGACACAGT
AACGGAGGGCACATCTGATCCACCTGAACCGATGGACCCGTCCGTGCGCC
AAGAACGGTATACGGCCAAGGATGTGGAAAGGGTTAAGGAAGCAGGAAGA
AAAATGACTGTGCGGGGAGTGCAAGGCTTCGCGTTCGGCGGCGCGCTCGG
GTGGTTTGCGACGCGGTCTCTTCAAGCTTCGCAAAAGATGCACCCGTCAA
ATGCGCTTCTGCAGAGATTACCGAAAATCAACAAGAACCACATCGTCGTC
ATCACCCTTGCGAACGCGGTTATGGCGGCGTACGTTGGCATCAGTATGGA
GGCTGCAAAGCGGATGTCATCCTTGCAAGAAATATTTCAAAACCGCGACG
CCGCCAAGGGAGACCCAAGGCGTGACACAGTAACGGAGGGCACATCTGAT
CCACCTGAACCGGTGTTCGAGGACGCCGCTTCACGCTCTGCCTCAAACGA
CACGGAGCGTGCCCCCAGTAAAGGTCGTAGGACCGTTCCTAGAATTGTTC
CTGAGTACAACAAATACCAAGCACAGTCGCACCTAAAACAGGTCAATGAA
GACAGCCATGCAAGGAGAGTTGCGGCAATAGAGGCCAAGAAACAAGAGCG
GGTGTTCGAGGACGCCGCTTCACGCTCTGCCTCAAACGACACGGAGCGTG
CCCCCAGTAAAGGTCGTAGGACCGTTCCTAGAATTGTTCCTGAGTACAAC
AAATACCAAGCACAGTCGCACCTAAAACAGGTCAATGAAGACAGCCATGC
AAGGAGAGTTGCGGCAATAGAGGCCAAGAAACAAGAGCGG
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