mRNA_H-paniculata_contig1483.2876.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1483.2876.1
Unique NamemRNA_H-paniculata_contig1483.2876.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1483.2876.1 vs. uniprot
Match: D8LNR5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNR5_ECTSI)

HSP 1 Score: 249 bits (635), Expect = 2.610e-82
Identity = 122/154 (79.22%), Postives = 139/154 (90.26%), Query Frame = 1 
Query:    1 MAEEDKKPRHRLGADELLEETDGAVVKIVNLLESNGLAPESVEHITTLVKGLDFMGALKLAKQLGLSMPDVPHEELVAMLLDAWDCVVYKTGNTRKQMYRKVRLLEADNKAEPEVLDRWKGEREKAERESAKANVAYITIREIVHSFKEVPEEQ 462
            MA+ED+KPRHRLGADELLEET GA  KIVNLLE NGLA ES+EH+T+L KG DFMG+L LA++LGLSMPDVPH +LV +LLDAWDCVVYKTG+TRKQMYRKVRLLEADNK EP+ LDRWKGER+KAERESAKANVAY+T+REI  SFKE P+E+
Sbjct:    1 MADEDRKPRHRLGADELLEETQGASAKIVNLLEVNGLAAESIEHLTSLTKGGDFMGSLNLARRLGLSMPDVPHNDLVVLLLDAWDCVVYKTGHTRKQMYRKVRLLEADNKTEPDTLDRWKGERDKAERESAKANVAYVTMREIAKSFKEEPQEE 154
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BLAST of mRNA_H-paniculata_contig1483.2876.1 vs. uniprot
Match: A0A835ZPP5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZPP5_9STRA)

HSP 1 Score: 134 bits (337), Expect = 6.360e-37
Identity = 67/142 (47.18%), Postives = 95/142 (66.90%), Query Frame = 1 
Query:   13 DKKPRHRLGADELLEETDGAVVKIVNLLESNGLAPESVEHITTLVKGLDFMGALKLAKQLGLSMPDVPHEELVAMLLDAWDCVVYKTGNTRKQMYRKVRLLEADNKAEPEVLDRWKGEREKAERESAKANVAYITIREIVHS 438
            +KKPR R+ A+ELLEET  A+ K V  LESNGL   SVE++  L   L +  AL L + LG +MP + H+  + MLLD W+CV     N+R+  YRKVR+LEAD K +PEVL +W  +R + ++ESA  N++YI +R+I+ +
Sbjct:    8 EKKPRTRMNAEELLEETSQAMEKAVAFLESNGLHAASVENVRHLTSALAWSDALHLTQSLGFTMPHIDHDAFIVMLLDTWECVAQMKLNSRRACYRKVRVLEADQKTDPEVLAKWLADRARVDKESAATNLSYIKMRQILRA 149
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1483.2876.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LNR5_ECTSI2.610e-8279.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZPP5_9STRA6.360e-3747.18Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1483contigH-paniculata_contig1483:17021..18589 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-08_006120.1
Exons3
Model size492
Cds size492
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1483.2876.1prot_H-paniculata_contig1483.2876.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1483 17021..18589 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929180.247765-CDS-H-paniculata_contig1483:17020..172091622929180.247765-CDS-H-paniculata_contig1483:17020..17209Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1483 17021..17209 -
1691480762.305724-CDS-H-paniculata_contig1483:17020..172091691480762.305724-CDS-H-paniculata_contig1483:17020..17209Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1483 17021..17209 -
1622929180.2640295-CDS-H-paniculata_contig1483:17979..181171622929180.2640295-CDS-H-paniculata_contig1483:17979..18117Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1483 17980..18117 -
1691480762.3167298-CDS-H-paniculata_contig1483:17979..181171691480762.3167298-CDS-H-paniculata_contig1483:17979..18117Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1483 17980..18117 -
1622929180.284361-CDS-H-paniculata_contig1483:18424..185891622929180.284361-CDS-H-paniculata_contig1483:18424..18589Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1483 18425..18589 -
1691480762.3264263-CDS-H-paniculata_contig1483:18424..185891691480762.3264263-CDS-H-paniculata_contig1483:18424..18589Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1483 18425..18589 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1483.2876.1

>prot_H-paniculata_contig1483.2876.1 ID=prot_H-paniculata_contig1483.2876.1|Name=mRNA_H-paniculata_contig1483.2876.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=164bp
MAEEDKKPRHRLGADELLEETDGAVVKIVNLLESNGLAPESVEHITTLVK
GLDFMGALKLAKQLGLSMPDVPHEELVAMLLDAWDCVVYKTGNTRKQMYR
KVRLLEADNKAEPEVLDRWKGEREKAERESAKANVAYITIREIVHSFKEV
PEEQQGEESSIVP*
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mRNA from alignment at H-paniculata_contig1483:17021..18589-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1483.2876.1 ID=mRNA_H-paniculata_contig1483.2876.1|Name=mRNA_H-paniculata_contig1483.2876.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1569bp|location=Sequence derived from alignment at H-paniculata_contig1483:17021..18589- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCAGAGGAGGATAAGAAACCTCGCCATAGGCTCGGCGCGGACGAATT
GTTAGAGGAGACAGATGGGGCGGTCGTCAAGATAGTAAACCTTCTAGAGT
CTAATGGCTTGGCGCCGGAGTCGGTGGAGCACATCACCACCTTGGTCAAA
GGGCTTGATTTCATGGTGAGTCAGCTTCACGGCGTGCTTCTGAAAGAGTG
CTCGCGTTGGCCGAGCAAGTGTGAGCATACGCGAACCGGCTACTACTGTC
TGTGTCACTAAATTGGTTGACCAAATAGCATTTTCTCTCGAATGGTCCTC
AGAATGCTAAGGTCATAATCGACATTATTACATATGCATATTCCACAACG
TCATGGGTTGAGTCCTCGGCGGATTGATGCAACACCACATACAGTGCACA
GTTGTGTTGTTCTCGAGAGCATCTCGTCATACTGTCCATATCTACCGCGC
TGTATCGATCTTGTGTCTTTAGGGTGCGTTGAAACTTGCGAAGCAATTGG
GTCTGAGCATGCCGGATGTGCCGCACGAAGAACTTGTGGCTATGCTCTTG
GATGCATGGGATTGCGTCGTGTATAAGACGGGCAACACGAGAAAGCAAAT
GTATAGAAAGGTGGGGCGAATGAGTTAGTTCAGTTCCACCTACAATCCGA
TCTGTGAAAGAATAGTTGCTGCCGGAAAGTTTTGCAAGACCTTCAGCTAT
ACGTACTGTATAAAAATGAAGTATTTGCAGTTGGTGCGTCTTGGAAGATA
CAGTGTTCATAACAAGGTGCCTTAGGAAATGCAGACACTCGTAATCTTCC
GAAGAGTGGAAGTAGCGGAAAGGGTTTTTTGCCTGACCTTCCAGGAGTTA
AAAAAAACAAAGAAAAAACAAGGTGCCTTGGTTTCTATGCTCGAGTCCGA
ATCAATTACACCTTTGTGCATGAGTCGTAGACCCTTGGAGCAGTCATGTC
GTCGAGTTCTTTGGGAGCCGAAAAAGTCTCGTTCAAGTCCTCACTGAACT
AAAAAAATTGAAGATACGAATCAAGTGAACGTTACGAGCGGGCATTGCTT
GTTGTATAATGAACGGCGTTTTGACATTCCGCGTTCGAAATACGAGGTAC
AGCTCGATTTATGTTGTGGCCAAAAGCTAACGCTATGTGTATTCGAATCA
ACCAAAACGTGAAAGGCACGCAAGTGGATCGAAGACGTTATCGGCAAGTA
CGCCATTCCCAAACGACCAAATATGTGCCTAAAAGGCTTGCCATCTATCT
AAAGTCAGTCAATGTAGTTGCGACTACCAGGCCCTCTGGGGCTCTGTGCA
AAACAGAGCGAAACATGAGCGAAAAACAGCCATGCAGACGTGCAATGTCA
ATGTATGTTTCTGATACCCGCATACCGCAGGTGAGGTTGCTGGAAGCTGA
CAACAAAGCTGAGCCAGAGGTATTGGATCGCTGGAAAGGGGAGAGGGAAA
AGGCGGAGCGAGAGAGCGCCAAGGCAAACGTTGCTTACATCACCATTCGC
GAGATTGTACACTCTTTCAAGGAGGTCCCCGAGGAGCAACAAGGAGAGGA
ATCTAGCATCGTTCCATAA
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Coding sequence (CDS) from alignment at H-paniculata_contig1483:17021..18589-

>mRNA_H-paniculata_contig1483.2876.1 ID=mRNA_H-paniculata_contig1483.2876.1|Name=mRNA_H-paniculata_contig1483.2876.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=984bp|location=Sequence derived from alignment at H-paniculata_contig1483:17021..18589- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCAGAGGAGGATAAGAAACCTCGCCATAGGCTCGGCGCGGACGAATT
GTTAGAGGAGACAGATGGGGCGGTCGTCAAGATAGTAAACCTTCTAGAGT
CTAATGGCTTGGCGCCGGAGTCGGTGGAGCACATCACCACCTTGGTCAAA
GGGCTTGATTTCATGATGGCAGAGGAGGATAAGAAACCTCGCCATAGGCT
CGGCGCGGACGAATTGTTAGAGGAGACAGATGGGGCGGTCGTCAAGATAG
TAAACCTTCTAGAGTCTAATGGCTTGGCGCCGGAGTCGGTGGAGCACATC
ACCACCTTGGTCAAAGGGCTTGATTTCATGGGTGCGTTGAAACTTGCGAA
GCAATTGGGTCTGAGCATGCCGGATGTGCCGCACGAAGAACTTGTGGCTA
TGCTCTTGGATGCATGGGATTGCGTCGTGTATAAGACGGGCAACACGAGA
AAGCAAATGTATAGAAAGGGTGCGTTGAAACTTGCGAAGCAATTGGGTCT
GAGCATGCCGGATGTGCCGCACGAAGAACTTGTGGCTATGCTCTTGGATG
CATGGGATTGCGTCGTGTATAAGACGGGCAACACGAGAAAGCAAATGTAT
AGAAAGGTGAGGTTGCTGGAAGCTGACAACAAAGCTGAGCCAGAGGTATT
GGATCGCTGGAAAGGGGAGAGGGAAAAGGCGGAGCGAGAGAGCGCCAAGG
CAAACGTTGCTTACATCACCATTCGCGAGATTGTACACTCTTTCAAGGAG
GTCCCCGAGGAGCAACAAGGAGAGGAATCTAGCATCGTTCCATAAGTGAG
GTTGCTGGAAGCTGACAACAAAGCTGAGCCAGAGGTATTGGATCGCTGGA
AAGGGGAGAGGGAAAAGGCGGAGCGAGAGAGCGCCAAGGCAAACGTTGCT
TACATCACCATTCGCGAGATTGTACACTCTTTCAAGGAGGTCCCCGAGGA
GCAACAAGGAGAGGAATCTAGCATCGTTCCATAA
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