mRNA_H-paniculata_contig1483.2875.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1483.2875.1
Unique NamemRNA_H-paniculata_contig1483.2875.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1483.2875.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1483contigH-paniculata_contig1483:14705..15159 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size455
Cds size336
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929179.7097378-UTR-H-paniculata_contig1483:14704..148231622929179.7097378-UTR-H-paniculata_contig1483:14704..14823Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1483 14705..14823 +
1691480762.0699458-UTR-H-paniculata_contig1483:14704..148231691480762.0699458-UTR-H-paniculata_contig1483:14704..14823Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1483 14705..14823 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929179.724311-CDS-H-paniculata_contig1483:14823..151591622929179.724311-CDS-H-paniculata_contig1483:14823..15159Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1483 14824..15159 +
1691480762.0786855-CDS-H-paniculata_contig1483:14823..151591691480762.0786855-CDS-H-paniculata_contig1483:14823..15159Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1483 14824..15159 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1483.2875.1prot_H-paniculata_contig1483.2875.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1483 14824..15159 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1483.2875.1

>prot_H-paniculata_contig1483.2875.1 ID=prot_H-paniculata_contig1483.2875.1|Name=mRNA_H-paniculata_contig1483.2875.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=112bp
MHAPEITAKPFDIALGCERFSSFFISRSRYDTIILKTKSASLGRCCIDMS
IGGIFLPSKASFLTIIAFEKRSYPGAISRDITAGIFHLLQLCLCFPYCSF
SKVDMYCELLNE
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mRNA from alignment at H-paniculata_contig1483:14705..15159+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1483.2875.1 ID=mRNA_H-paniculata_contig1483.2875.1|Name=mRNA_H-paniculata_contig1483.2875.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=455bp|location=Sequence derived from alignment at H-paniculata_contig1483:14705..15159+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGAAGAGGTAATGTGAGTGTTGAGTATTATATCGGGCTATTACCGAGGCG
GTGATCAGCTTATGTTGGGATTGTTAGACGCTGCATGCGTTGAGATAAAA
AGCTTCACTCTGCGTTTTAATGCATGCGCCGGAAATTACGGCAAAACCAT
TTGATATCGCACTGGGGTGCGAAAGGTTTTCAAGCTTTTTTATTTCGAGA
AGTAGGTACGACACTATTATACTGAAAACGAAAAGTGCGTCATTGGGAAG
ATGTTGCATAGATATGTCAATTGGCGGGATTTTTTTACCGAGTAAGGCCT
CCTTTCTCACGATAATCGCGTTTGAAAAGCGATCGTATCCCGGTGCGATA
TCAAGAGATATTACGGCAGGTATTTTCCACTTACTGCAGTTGTGCCTGTG
TTTCCCATACTGTTCTTTCTCTAAGGTTGACATGTATTGCGAGCTGCTGA
ACGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig1483:14705..15159+

>mRNA_H-paniculata_contig1483.2875.1 ID=mRNA_H-paniculata_contig1483.2875.1|Name=mRNA_H-paniculata_contig1483.2875.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at H-paniculata_contig1483:14705..15159+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCATGCGCCGGAAATTACGGCAAAACCATTTGATATCGCACTGGGGTG
CGAAAGGTTTTCAAGCTTTTTTATTTCGAGAAGTAGGTACGACACTATTA
TACTGAAAACGAAAAGTGCGTCATTGGGAAGATGTTGCATAGATATGTCA
ATTGGCGGGATTTTTTTACCGAGTAAGGCCTCCTTTCTCACGATAATCGC
GTTTGAAAAGCGATCGTATCCCGGTGCGATATCAAGAGATATTACGGCAG
GTATTTTCCACTTACTGCAGTTGTGCCTGTGTTTCCCATACTGTTCTTTC
TCTAAGGTTGACATGTATTGCGAGCTGCTGAACGAGATGCATGCGCCGGA
AATTACGGCAAAACCATTTGATATCGCACTGGGGTGCGAAAGGTTTTCAA
GCTTTTTTATTTCGAGAAGTAGGTACGACACTATTATACTGAAAACGAAA
AGTGCGTCATTGGGAAGATGTTGCATAGATATGTCAATTGGCGGGATTTT
TTTACCGAGTAAGGCCTCCTTTCTCACGATAATCGCGTTTGAAAAGCGAT
CGTATCCCGGTGCGATATCAAGAGATATTACGGCAGGTATTTTCCACTTA
CTGCAGTTGTGCCTGTGTTTCCCATACTGTTCTTTCTCTAAGGTTGACAT
GTATTGCGAGCTGCTGAACGAG
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