mRNA_H-paniculata_contig14816.2868.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14816.2868.1
Unique NamemRNA_H-paniculata_contig14816.2868.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig14816.2868.1 vs. uniprot
Match: A0A6H5J855_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J855_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 2.610e-18
Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 1
Query:    1 ATSALDARSEALVQEALNRLMKDRTVLIIAHRLSTVVDADKICVLSQGKV 150
            ATSALDA SEALVQEAL+RL K RTVL+IAHRLSTVV+ADKICVLSQGKV
Sbjct:  132 ATSALDAHSEALVQEALSRLTKGRTVLVIAHRLSTVVNADKICVLSQGKV 181          
BLAST of mRNA_H-paniculata_contig14816.2868.1 vs. uniprot
Match: D8LLV9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLV9_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 3.000e-17
Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 1
Query:    1 ATSALDARSEALVQEALNRLMKDRTVLIIAHRLSTVVDADKICVLSQGKV 150
            ATSALDA SEALVQEAL+RL K RTVL+IAHRLSTVV+ADKICVLSQGKV
Sbjct:  405 ATSALDAHSEALVQEALSRLTKGRTVLVIAHRLSTVVNADKICVLSQGKV 454          
BLAST of mRNA_H-paniculata_contig14816.2868.1 vs. uniprot
Match: A0A0B1S4Q8_OESDE (Putative antigen peptide transporter-like 2 (Fragment) n=1 Tax=Oesophagostomum dentatum TaxID=61180 RepID=A0A0B1S4Q8_OESDE)

HSP 1 Score: 79.0 bits (193), Expect = 1.860e-15
Identity = 42/70 (60.00%), Postives = 53/70 (75.71%), Query Frame = 1
Query:    1 ATSALDARSEALVQEALNRLMKDRTVLIIAHRLSTVVDADKICVLSQGKVTI--CFYHIFLSLYLRSMYF 204
            ATSALDA SEALVQEALNR  ++RTVLI+AHRLST+  AD+I V+ +G +    CFYH+FLS   ++  F
Sbjct:  522 ATSALDAESEALVQEALNRCARERTVLIVAHRLSTIEKADRIAVIHKGSLVQVQCFYHLFLSFLFQATNF 591          
BLAST of mRNA_H-paniculata_contig14816.2868.1 vs. uniprot
Match: A0A353BI11_9BACT (Sugar ABC transporter ATP-binding protein (Fragment) n=1 Tax=candidate division Zixibacteria bacterium TaxID=2053527 RepID=A0A353BI11_9BACT)

HSP 1 Score: 73.2 bits (178), Expect = 2.080e-15
Identity = 37/56 (66.07%), Postives = 45/56 (80.36%), Query Frame = 1
Query:    1 ATSALDARSEALVQEALNRLMKDRTVLIIAHRLSTVVDADKICVLSQGKVTICFYH 168
            ATS+LDA SEA+VQEA++RLMK RT L+IAHRLSTV  AD+I V+ QG +T C  H
Sbjct:    9 ATSSLDAESEAMVQEAIDRLMKGRTTLVIAHRLSTVKRADRIVVMEQGMITECGKH 64          
BLAST of mRNA_H-paniculata_contig14816.2868.1 vs. uniprot
Match: A0A835ZKR2_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKR2_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 4.730e-15
Identity = 40/50 (80.00%), Postives = 44/50 (88.00%), Query Frame = 1
Query:    1 ATSALDARSEALVQEALNRLMKDRTVLIIAHRLSTVVDADKICVLSQGKV 150
            ATSALDA+SEALVQEAL RLM+ RTVL+IAHRLSTVV ADKICV+  G V
Sbjct:  502 ATSALDAQSEALVQEALERLMQGRTVLVIAHRLSTVVSADKICVIGSGMV 551          
BLAST of mRNA_H-paniculata_contig14816.2868.1 vs. uniprot
Match: K9YVI8_DACSA (ABC-type multidrug transport system, ATPase and permease component n=2 Tax=Cyanobacteria TaxID=1117 RepID=K9YVI8_DACSA)

HSP 1 Score: 76.3 bits (186), Expect = 1.650e-14
Identity = 39/50 (78.00%), Postives = 46/50 (92.00%), Query Frame = 1
Query:    1 ATSALDARSEALVQEALNRLMKDRTVLIIAHRLSTVVDADKICVLSQGKV 150
            ATSALD+ SEALVQEAL+RL+KDRTVLIIAHRL+TV +AD+I VL QGK+
Sbjct:  501 ATSALDSESEALVQEALDRLLKDRTVLIIAHRLTTVRNADRILVLEQGKI 550          
BLAST of mRNA_H-paniculata_contig14816.2868.1 vs. uniprot
Match: A0A383VR86_TETOB (ABC transporter domain-containing protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VR86_TETOB)

HSP 1 Score: 73.9 bits (180), Expect = 2.110e-14
Identity = 36/50 (72.00%), Postives = 44/50 (88.00%), Query Frame = 1
Query:    1 ATSALDARSEALVQEALNRLMKDRTVLIIAHRLSTVVDADKICVLSQGKV 150
            ATSALD  SEA+VQEALNRLM  RTV+++AHRLST+ DA +ICV+SQG+V
Sbjct:   76 ATSALDTESEAVVQEALNRLMAGRTVVVVAHRLSTIRDAHRICVVSQGQV 125          
BLAST of mRNA_H-paniculata_contig14816.2868.1 vs. uniprot
Match: Q7NI55_GLOVI (HlyB/MsbA family ABC transporter n=2 Tax=Gloeobacter TaxID=33071 RepID=Q7NI55_GLOVI)

HSP 1 Score: 75.5 bits (184), Expect = 3.080e-14
Identity = 37/50 (74.00%), Postives = 45/50 (90.00%), Query Frame = 1
Query:    1 ATSALDARSEALVQEALNRLMKDRTVLIIAHRLSTVVDADKICVLSQGKV 150
            ATSALD  SEALVQEALNRLM+DRTV+I+AHRLST+ DAD+I VL +G++
Sbjct:  505 ATSALDNESEALVQEALNRLMQDRTVIIVAHRLSTIRDADRILVLERGRI 554          
BLAST of mRNA_H-paniculata_contig14816.2868.1 vs. uniprot
Match: A0A352HT70_9PORP (Antibiotic ABC transporter ATP-binding protein n=1 Tax=Porphyromonadaceae bacterium TaxID=2049046 RepID=A0A352HT70_9PORP)

HSP 1 Score: 75.5 bits (184), Expect = 3.080e-14
Identity = 36/56 (64.29%), Postives = 44/56 (78.57%), Query Frame = 1
Query:    1 ATSALDARSEALVQEALNRLMKDRTVLIIAHRLSTVVDADKICVLSQGKVTICFYH 168
            ATSALD  SE LVQEAL RLM+DRT ++IAHRLST+V AD ICV+ +G++  C  H
Sbjct:  538 ATSALDTESERLVQEALERLMRDRTTIVIAHRLSTIVGADMICVMDRGRIVECGTH 593          
BLAST of mRNA_H-paniculata_contig14816.2868.1 vs. uniprot
Match: A0A1G1BZ25_9BACT (Uncharacterized protein n=1 Tax=Lentisphaerae bacterium RIFOXYB12_FULL_65_16 TaxID=1798581 RepID=A0A1G1BZ25_9BACT)

HSP 1 Score: 75.5 bits (184), Expect = 3.090e-14
Identity = 35/50 (70.00%), Postives = 45/50 (90.00%), Query Frame = 1
Query:    1 ATSALDARSEALVQEALNRLMKDRTVLIIAHRLSTVVDADKICVLSQGKV 150
            ATS+LD+ SEAL+QEAL R++KDRT L+IAHRLSTV+DADKI V+ QG++
Sbjct:  555 ATSSLDSESEALIQEALKRILKDRTTLVIAHRLSTVMDADKIIVIDQGRI 604          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14816.2868.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J855_9PHAE2.610e-1888.00ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D8LLV9_ECTSI3.000e-1788.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A0B1S4Q8_OESDE1.860e-1560.00Putative antigen peptide transporter-like 2 (Fragm... [more]
A0A353BI11_9BACT2.080e-1566.07Sugar ABC transporter ATP-binding protein (Fragmen... [more]
A0A835ZKR2_9STRA4.730e-1580.00P-loop containing nucleoside triphosphate hydrolas... [more]
K9YVI8_DACSA1.650e-1478.00ABC-type multidrug transport system, ATPase and pe... [more]
A0A383VR86_TETOB2.110e-1472.00ABC transporter domain-containing protein n=1 Tax=... [more]
Q7NI55_GLOVI3.080e-1474.00HlyB/MsbA family ABC transporter n=2 Tax=Gloeobact... [more]
A0A352HT70_9PORP3.080e-1464.29Antibiotic ABC transporter ATP-binding protein n=1... [more]
A0A1G1BZ25_9BACT3.090e-1470.00Uncharacterized protein n=1 Tax=Lentisphaerae bact... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14816contigH-paniculata_contig14816:324..545 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.0
Seed ortholog evalue1.3e-13
Seed eggNOG ortholog2880.D8LLV9
KEGG koko:K05655,ko:K05657
KEGG TC3.A.1.201
KEGG Pathwayko02010,map02010
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1132@1,KOG0058@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Exons1
Model size222
Cds size222
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929179.1074383-CDS-H-paniculata_contig14816:323..5451622929179.1074383-CDS-H-paniculata_contig14816:323..545Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14816 324..545 -
1691480761.8379366-CDS-H-paniculata_contig14816:323..5451691480761.8379366-CDS-H-paniculata_contig14816:323..545Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14816 324..545 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14816.2868.1prot_H-paniculata_contig14816.2868.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14816 324..545 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14816.2868.1

>prot_H-paniculata_contig14816.2868.1 ID=prot_H-paniculata_contig14816.2868.1|Name=mRNA_H-paniculata_contig14816.2868.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=74bp
ATSALDARSEALVQEALNRLMKDRTVLIIAHRLSTVVDADKICVLSQGKV
TICFYHIFLSLYLRSMYFLCLIS*
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mRNA from alignment at H-paniculata_contig14816:324..545-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14816.2868.1 ID=mRNA_H-paniculata_contig14816.2868.1|Name=mRNA_H-paniculata_contig14816.2868.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=222bp|location=Sequence derived from alignment at H-paniculata_contig14816:324..545- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAACTAGTGCTCTAGACGCGCGCAGCGAAGCTCTGGTGCAAGAAGCTTT GAATCGCCTGATGAAGGACCGTACGGTGCTCATCATCGCACACCGCCTGT CCACGGTAGTGGACGCGGACAAGATATGCGTGCTGTCTCAGGGCAAGGTA ACGATATGTTTTTATCATATCTTTCTTTCTCTTTATCTACGCTCGATGTA CTTCCTCTGTCTCATAAGTTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig14816:324..545-

>mRNA_H-paniculata_contig14816.2868.1 ID=mRNA_H-paniculata_contig14816.2868.1|Name=mRNA_H-paniculata_contig14816.2868.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=444bp|location=Sequence derived from alignment at H-paniculata_contig14816:324..545- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAACTAGTGCTCTAGACGCGCGCAGCGAAGCTCTGGTGCAAGAAGCTTT
GAATCGCCTGATGAAGGACCGTACGGTGCTCATCATCGCACACCGCCTGT
CCACGGTAGTGGACGCGGACAAGATATGCGTGCTGTCTCAGGGCAAGGTA
ACGATATGTTTTTATCATATCTTTCTTTCTCTTTATCTACGCTCGATGTA
CTTCCTCTGTCTCATAAGTTAGGCAACTAGTGCTCTAGACGCGCGCAGCG
AAGCTCTGGTGCAAGAAGCTTTGAATCGCCTGATGAAGGACCGTACGGTG
CTCATCATCGCACACCGCCTGTCCACGGTAGTGGACGCGGACAAGATATG
CGTGCTGTCTCAGGGCAAGGTAACGATATGTTTTTATCATATCTTTCTTT
CTCTTTATCTACGCTCGATGTACTTCCTCTGTCTCATAAGTTAG
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