mRNA_H-paniculata_contig14774.2850.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14774.2850.1
Unique NamemRNA_H-paniculata_contig14774.2850.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig14774.2850.1 vs. uniprot
Match: D7FTE1_ECTSI (Tocopherol phytyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTE1_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 2.970e-20
Identity = 48/68 (70.59%), Postives = 53/68 (77.94%), Query Frame = 1 
Query:   19 LVQDVPDVAGDRKFNIPSFSVVLGEERLFVFARRLLTTLLWSTAGALGFGAREALSA------GLRGI 204
            L++DVPDV GDR FNIPSFSVVLGE +LF FARRLLT LLWSTAG LG GA+ A SA      GLRG+
Sbjct:  262 LMKDVPDVEGDRMFNIPSFSVVLGETKLFAFARRLLTALLWSTAGVLGVGAKAAASASLPLTSGLRGL 329
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BLAST of mRNA_H-paniculata_contig14774.2850.1 vs. uniprot
Match: A0A6H5JCM7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCM7_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 7.220e-20
Identity = 46/59 (77.97%), Postives = 50/59 (84.75%), Query Frame = 1 
Query:   19 LVQDVPDVAGDRKFNIPSFSVVLGEERLFVFARRLLTTLLWSTAGALGFGAREALSAGL 195
            L++DVPDVAGDR FNIPSFSVVLGE +LF FARRLLT LLWSTA ALG GA+ A SA L
Sbjct:  373 LMKDVPDVAGDRMFNIPSFSVVLGEIKLFAFARRLLTALLWSTAAALGVGAKAAASASL 431
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BLAST of mRNA_H-paniculata_contig14774.2850.1 vs. uniprot
Match: B7G488_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G488_PHATC)

HSP 1 Score: 61.2 bits (147), Expect = 2.980e-9
Identity = 34/66 (51.52%), Postives = 46/66 (69.70%), Query Frame = 1 
Query:   19 LVQDVPDVAGDRKFNIPSFSVVLGEERLFVFARRLLTTLLWSTAGALGFGAREALSAGLRGIAASR 216
            L++DVPDVAGDR  N+ +FSV LG+ R+F  +RRLL+ L W+    +GFG + A  A   G+AASR
Sbjct:  291 LMKDVPDVAGDRNSNVRTFSVRLGQGRIFQASRRLLSGLFWTVG--VGFG-KAAFQAPTAGLAASR 353
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BLAST of mRNA_H-paniculata_contig14774.2850.1 vs. uniprot
Match: A0A7S2A407_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A407_TRICV)

HSP 1 Score: 55.1 bits (131), Expect = 7.030e-8
Identity = 28/56 (50.00%), Postives = 37/56 (66.07%), Query Frame = 1 
Query:   19 LVQDVPDVAGDRKFNIPSFSVVLGEERLFVFARRLLTTLLWSTAGALGFGAREALS 186
            L++DVPDV GDR F I SFSV +G+ ++F   RRLL  L  + A   G GA +AL+
Sbjct:   70 LMKDVPDVGGDRVFGIRSFSVRVGQRKIFTSMRRLLQGLYGAFAAGFGIGAYKALA 125
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BLAST of mRNA_H-paniculata_contig14774.2850.1 vs. uniprot
Match: A0A7S4BI21_CHRCT (Hypothetical protein (Fragment) n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BI21_CHRCT)

HSP 1 Score: 51.6 bits (122), Expect = 6.800e-6
Identity = 29/66 (43.94%), Postives = 40/66 (60.61%), Query Frame = 1 
Query:   19 LVQDVPDVAGDRKFNIPSFSVVLGEERLFVFARRLLTTLLWSTAGALGFGAREALSAGLRGIAASR 216
            L++DVPDV GDR++ I SFSV +G+ ++  FA RLL   L +    LG  A  A  AG   ++A R
Sbjct:  209 LIKDVPDVDGDRRYGISSFSVRMGQSQVLNFAVRLLALTLATAGATLGAMAFSAAQAGAIVLSARR 274
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BLAST of mRNA_H-paniculata_contig14774.2850.1 vs. uniprot
Match: A0A7S0KBA4_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus aporus TaxID=1398097 RepID=A0A7S0KBA4_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 4.100e-5
Identity = 26/51 (50.98%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:   19 LVQDVPDVAGDRKFNIPSFSVVLGEERLFVFARRLLTTLLWSTAGALGFGA 171
            L++DVPDV GD K NI SFSV +G++++F  ARR L+ LL+      G+GA
Sbjct:  132 LMKDVPDVEGDEKANIRSFSVRVGQKKIFKGARRTLSLLLF------GYGA 176
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BLAST of mRNA_H-paniculata_contig14774.2850.1 vs. uniprot
Match: A0A7S1E2L3_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E2L3_9STRA)

HSP 1 Score: 47.8 bits (112), Expect = 6.170e-5
Identity = 29/67 (43.28%), Postives = 43/67 (64.18%), Query Frame = 1 
Query:   19 LVQDVPDVAGDRKFNIPSFSVVLGEERLFVFARRLLTTLLWSTAGALGFG-AREALSAGLRGIAASR 216
            L++DVPDV GD +  + +FSV +G++R+F   +RLLT+L       LG G  RE L+A +R  A +R
Sbjct:   30 LMKDVPDVVGDEQAKVRTFSVRVGQKRIFGVTKRLLTSLFLL----LGAGFIREGLNATVRTTAVTR 92
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14774.2850.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FTE1_ECTSI2.970e-2070.59Tocopherol phytyltransferase n=1 Tax=Ectocarpus si... [more]
A0A6H5JCM7_9PHAE7.220e-2077.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
B7G488_PHATC2.980e-951.52Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S2A407_TRICV7.030e-850.00Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S4BI21_CHRCT6.800e-643.94Hypothetical protein (Fragment) n=1 Tax=Chrysotila... [more]
A0A7S0KBA4_9STRA4.100e-550.98Hypothetical protein n=1 Tax=Leptocylindrus aporus... [more]
A0A7S1E2L3_9STRA6.170e-543.28Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14774contigH-paniculata_contig14774:6018..6236 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.7
Seed ortholog evalue1.6e-16
Seed eggNOG ortholog2880.D7FTE1
Preferred nameHPT1
KEGG rclassRC01840,RC02895
KEGG koko:K09833
KEGG ReactionR07500,R10708
KEGG Pathwayko00130,ko01100,ko01110,map00130,map01100,map01110
KEGG ModuleM00112
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0003824,GO:0004659,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0006636,GO:0006766,GO:0006775,GO:0006810,GO:0008150,GO:0008152,GO:0008610,GO:0008643,GO:0009058,GO:0009110,GO:0009266,GO:0009507,GO:0009536,GO:0009628,GO:0009915,GO:0009987,GO:0010176,GO:0010189,GO:0010232,GO:0010233,GO:0010354,GO:0015766,GO:0015770,GO:0015772,GO:0016043,GO:0016053,GO:0016740,GO:0016765,GO:0018130,GO:0019752,GO:0031347,GO:0032501,GO:0032787,GO:0033559,GO:0042360,GO:0042362,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045229,GO:0046394,GO:0046483,GO:0048583,GO:0050789,GO:0050896,GO:0051179,GO:0051234,GO:0065007,GO:0071554,GO:0071555,GO:0071702,GO:0071704,GO:0071840,GO:0072330,GO:0080134,GO:1901360,GO:1901362,GO:1901576,GO:1901615,GO:1901617
EggNOG free text desc.homogentisate phytyltransferase activity
EggNOG OGs2R0I3@2759,COG0382@1
Ec32 ortholog descriptiontocopherol phytyltransferase
Ec32 orthologEc-21_000990.1
EC2.5.1.115,2.5.1.116
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01006
Exons1
Model size219
Cds size219
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929176.2347686-CDS-H-paniculata_contig14774:6017..62361622929176.2347686-CDS-H-paniculata_contig14774:6017..6236Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14774 6018..6236 -
1691480760.8234174-CDS-H-paniculata_contig14774:6017..62361691480760.8234174-CDS-H-paniculata_contig14774:6017..6236Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14774 6018..6236 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14774.2850.1prot_H-paniculata_contig14774.2850.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14774 6018..6236 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14774.2850.1

>prot_H-paniculata_contig14774.2850.1 ID=prot_H-paniculata_contig14774.2850.1|Name=mRNA_H-paniculata_contig14774.2850.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=73bp
FFLLFFLVQDVPDVAGDRKFNIPSFSVVLGEERLFVFARRLLTTLLWSTA
GALGFGAREALSAGLRGIAASR*
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mRNA from alignment at H-paniculata_contig14774:6018..6236-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14774.2850.1 ID=mRNA_H-paniculata_contig14774.2850.1|Name=mRNA_H-paniculata_contig14774.2850.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=219bp|location=Sequence derived from alignment at H-paniculata_contig14774:6018..6236- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTTTCCTGTTGTTTTTCTTGGTTCAGGACGTGCCTGATGTAGCTGGGGA
CCGCAAGTTCAATATCCCGTCATTCTCTGTCGTACTGGGAGAGGAGCGCC
TGTTCGTCTTCGCGCGACGCCTGCTGACCACCTTGCTGTGGTCGACGGCG
GGGGCCCTTGGATTCGGTGCGCGGGAGGCGTTATCCGCTGGTCTGCGGGG
CATCGCGGCATCTAGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig14774:6018..6236-

>mRNA_H-paniculata_contig14774.2850.1 ID=mRNA_H-paniculata_contig14774.2850.1|Name=mRNA_H-paniculata_contig14774.2850.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=438bp|location=Sequence derived from alignment at H-paniculata_contig14774:6018..6236- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTTTCCTGTTGTTTTTCTTGGTTCAGGACGTGCCTGATGTAGCTGGGGA
CCGCAAGTTCAATATCCCGTCATTCTCTGTCGTACTGGGAGAGGAGCGCC
TGTTCGTCTTCGCGCGACGCCTGCTGACCACCTTGCTGTGGTCGACGGCG
GGGGCCCTTGGATTCGGTGCGCGGGAGGCGTTATCCGCTGGTCTGCGGGG
CATCGCGGCATCTAGGTGATTTTTCCTGTTGTTTTTCTTGGTTCAGGACG
TGCCTGATGTAGCTGGGGACCGCAAGTTCAATATCCCGTCATTCTCTGTC
GTACTGGGAGAGGAGCGCCTGTTCGTCTTCGCGCGACGCCTGCTGACCAC
CTTGCTGTGGTCGACGGCGGGGGCCCTTGGATTCGGTGCGCGGGAGGCGT
TATCCGCTGGTCTGCGGGGCATCGCGGCATCTAGGTGA
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