mRNA_H-paniculata_contig14720.2821.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14720.2821.1
Unique NamemRNA_H-paniculata_contig14720.2821.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig14720.2821.1 vs. uniprot
Match: D7G2K8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2K8_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 3.560e-17
Identity = 39/47 (82.98%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:    1 QVWPFSLQNDGFWEKKIDEPFLEKDRNALELLRALIRVTMMRHSKSQ 141
            QVWPFSLQNDGFWEKK+ EPF  KD  ALELLRALI V MMRHSKSQ
Sbjct:  595 QVWPFSLQNDGFWEKKVGEPFEAKDYGALELLRALIGVVMMRHSKSQ 641
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BLAST of mRNA_H-paniculata_contig14720.2821.1 vs. uniprot
Match: A0A835Z4V2_9STRA (SNF2 family N-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4V2_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 2.400e-11
Identity = 27/45 (60.00%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:    1 QVWPFSLQNDGFWEKKIDEPFLEKDRNALELLRALIRVTMMRHSK 135
            +VWPF+LQNDGFWE+K+  PF  + R+AL L+ AL+ +T MRHSK
Sbjct:  368 RVWPFTLQNDGFWERKVQAPFEGRRRDALPLVHALVEITSMRHSK 412
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BLAST of mRNA_H-paniculata_contig14720.2821.1 vs. uniprot
Match: A0A2V3IIE0_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IIE0_9FLOR)

HSP 1 Score: 52.4 bits (124), Expect = 1.370e-6
Identity = 23/47 (48.94%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:    1 QVWPFSLQNDGFWEKKIDEPFLEKDRNALELLRALIRVTMMRHSKSQ 141
            ++WPF+L+NDGFWEK +  P   + R    LL +L+ VTM+RH+K+Q
Sbjct:  576 RIWPFTLENDGFWEKHVLGP--RRSRVGSSLLSSLLDVTMIRHTKAQ 620
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BLAST of mRNA_H-paniculata_contig14720.2821.1 vs. uniprot
Match: R7QAQ4_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QAQ4_CHOCR)

HSP 1 Score: 50.1 bits (118), Expect = 8.960e-6
Identity = 24/47 (51.06%), Postives = 33/47 (70.21%), Query Frame = 1 
Query:    1 QVWPFSLQNDGFWEKKIDEPFLEKDRNALELLRALIRVTMMRHSKSQ 141
            +VWPF+L +DGFWE+ I  PF  ++  A   +  L+ VTMMRHSK+Q
Sbjct:  273 RVWPFTLFDDGFWERLIYCPFAAQESTAF--IDHLLNVTMMRHSKAQ 317
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14720.2821.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G2K8_ECTSI3.560e-1782.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z4V2_9STRA2.400e-1160.00SNF2 family N-terminal domain-containing protein n... [more]
A0A2V3IIE0_9FLOR1.370e-648.94Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QAQ4_CHOCR8.960e-651.06Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14720contigH-paniculata_contig14720:6088..6228 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score83.2
Seed ortholog evalue3.6e-14
Seed eggNOG ortholog2880.D7G2K8
KEGG koko:K15710,ko:K15711
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.pyrimidine dimer repair by nucleotide-excision repair
EggNOG OGsCOG0141@1,COG0553@1,KOG1001@2759,KOG1002@2759
EC2.3.2.27
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03400,ko04121
Exons1
Model size141
Cds size141
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929172.0338144-CDS-H-paniculata_contig14720:6087..62281622929172.0338144-CDS-H-paniculata_contig14720:6087..6228Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14720 6088..6228 -
1691480759.4588015-CDS-H-paniculata_contig14720:6087..62281691480759.4588015-CDS-H-paniculata_contig14720:6087..6228Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14720 6088..6228 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14720.2821.1prot_H-paniculata_contig14720.2821.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14720 6088..6228 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14720.2821.1

>prot_H-paniculata_contig14720.2821.1 ID=prot_H-paniculata_contig14720.2821.1|Name=mRNA_H-paniculata_contig14720.2821.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=47bp
QVWPFSLQNDGFWEKKIDEPFLEKDRNALELLRALIRVTMMRHSKSQ
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mRNA from alignment at H-paniculata_contig14720:6088..6228-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14720.2821.1 ID=mRNA_H-paniculata_contig14720.2821.1|Name=mRNA_H-paniculata_contig14720.2821.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=141bp|location=Sequence derived from alignment at H-paniculata_contig14720:6088..6228- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTATGGCCCTTTAGTCTTCAAAACGACGGATTTTGGGAGAAGAAGAT
CGATGAGCCTTTCTTGGAAAAAGACAGAAACGCGCTCGAGCTTCTTCGGG
CGCTGATCAGGGTTACCATGATGAGGCACTCCAAGTCGCAG
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Coding sequence (CDS) from alignment at H-paniculata_contig14720:6088..6228-

>mRNA_H-paniculata_contig14720.2821.1 ID=mRNA_H-paniculata_contig14720.2821.1|Name=mRNA_H-paniculata_contig14720.2821.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=282bp|location=Sequence derived from alignment at H-paniculata_contig14720:6088..6228- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTATGGCCCTTTAGTCTTCAAAACGACGGATTTTGGGAGAAGAAGAT
CGATGAGCCTTTCTTGGAAAAAGACAGAAACGCGCTCGAGCTTCTTCGGG
CGCTGATCAGGGTTACCATGATGAGGCACTCCAAGTCGCAGCAGGTATGG
CCCTTTAGTCTTCAAAACGACGGATTTTGGGAGAAGAAGATCGATGAGCC
TTTCTTGGAAAAAGACAGAAACGCGCTCGAGCTTCTTCGGGCGCTGATCA
GGGTTACCATGATGAGGCACTCCAAGTCGCAG
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