mRNA_H-paniculata_contig14709.2813.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14709.2813.1
Unique NamemRNA_H-paniculata_contig14709.2813.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14709.2813.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14709contigH-paniculata_contig14709:690..1046 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size358
Cds size318
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929170.9305122-UTR-H-paniculata_contig14709:689..7281622929170.9305122-UTR-H-paniculata_contig14709:689..728Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14709 690..728 +
1691480759.0377836-UTR-H-paniculata_contig14709:689..7281691480759.0377836-UTR-H-paniculata_contig14709:689..728Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14709 690..728 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929170.9455829-CDS-H-paniculata_contig14709:728..10461622929170.9455829-CDS-H-paniculata_contig14709:728..1046Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14709 729..1046 +
1691480759.0489097-CDS-H-paniculata_contig14709:728..10461691480759.0489097-CDS-H-paniculata_contig14709:728..1046Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14709 729..1046 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14709.2813.1prot_H-paniculata_contig14709.2813.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14709 729..1046 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14709.2813.1

>prot_H-paniculata_contig14709.2813.1 ID=prot_H-paniculata_contig14709.2813.1|Name=mRNA_H-paniculata_contig14709.2813.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=106bp
MASAIVVCSLQWFAMRSMSLRNCRHAFKTTQTRVGFDDFFLLFTFSGRAT
VEIHNLPAIPIFGAIVLSFIACIVFFGRIHYFIECDDRCKQTQHSTMAGD
VMPTSR
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mRNA from alignment at H-paniculata_contig14709:690..1046+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14709.2813.1 ID=mRNA_H-paniculata_contig14709.2813.1|Name=mRNA_H-paniculata_contig14709.2813.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=357bp|location=Sequence derived from alignment at H-paniculata_contig14709:690..1046+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTTCAGAGTAGGCTTGTCTTATTTGCTGATTCGCTTTTATGGCATCTGC
AATCGTGGTGTGTAGTTTGCAATGGTTTGCAATGCGGTCGATGAGTTTGA
GGAATTGTAGACATGCCTTCAAGACGACACAAACTCGTGTTGGCTTTGAT
GATTTTTTTTTGCTTTTTACTTTTTCAGGGAGGGCAACAGTAGAAATCCA
TAACCTTCCTGCCATACCTATATTTGGAGCAATAGTCCTTTCGTTTATTG
CGTGCATCGTGTTCTTCGGTAGAATTCACTACTTCATCGAATGCGATGAT
AGATGTAAACAAACCCAGCATAGTACGATGGCAGGTGACGTCATGCCGAC
ATCACGC
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Coding sequence (CDS) from alignment at H-paniculata_contig14709:690..1046+

>mRNA_H-paniculata_contig14709.2813.1 ID=mRNA_H-paniculata_contig14709.2813.1|Name=mRNA_H-paniculata_contig14709.2813.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at H-paniculata_contig14709:690..1046+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCATCTGCAATCGTGGTGTGTAGTTTGCAATGGTTTGCAATGCGGTC
GATGAGTTTGAGGAATTGTAGACATGCCTTCAAGACGACACAAACTCGTG
TTGGCTTTGATGATTTTTTTTTGCTTTTTACTTTTTCAGGGAGGGCAACA
GTAGAAATCCATAACCTTCCTGCCATACCTATATTTGGAGCAATAGTCCT
TTCGTTTATTGCGTGCATCGTGTTCTTCGGTAGAATTCACTACTTCATCG
AATGCGATGATAGATGTAAACAAACCCAGCATAGTACGATGGCAGGTGAC
GTCATGCCGACATCACGCATGGCATCTGCAATCGTGGTGTGTAGTTTGCA
ATGGTTTGCAATGCGGTCGATGAGTTTGAGGAATTGTAGACATGCCTTCA
AGACGACACAAACTCGTGTTGGCTTTGATGATTTTTTTTTGCTTTTTACT
TTTTCAGGGAGGGCAACAGTAGAAATCCATAACCTTCCTGCCATACCTAT
ATTTGGAGCAATAGTCCTTTCGTTTATTGCGTGCATCGTGTTCTTCGGTA
GAATTCACTACTTCATCGAATGCGATGATAGATGTAAACAAACCCAGCAT
AGTACGATGGCAGGTGACGTCATGCCGACATCACGC
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