mRNA_H-paniculata_contig14595.2753.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14595.2753.1
Unique NamemRNA_H-paniculata_contig14595.2753.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig14595.2753.1 vs. uniprot
Match: D8LKL4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKL4_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 3.990e-10
Identity = 46/120 (38.33%), Postives = 61/120 (50.83%), Query Frame = 1 
Query:    1 ELLDIPAEFLQRAFASGHSLQLHYEFLGRREAIPLESRARLL----RRCHHVAKRTVPGLSTERTHTKAKEREEKDRASRDGRRGMVHLPVNYFRVFSFLSPATSLKGGLPKGSGLDKFL 348
            E+LD+P  FL+ A      LQL YE LG RE I LE+   +      R  + A R   G   +           ++    +G   +V + VN+FRVF+FL+  T LKG LPKG GLD FL
Sbjct:  801 EILDVPRNFLREAAERSRPLQLQYELLGHREVIHLENPLAVAPFGPSRSGNNAVRFSGGNDGDVVGGATAGARAREGGREEGAGLLVPVSVNHFRVFTFLAGDTPLKGELPKGCGLDTFL 920
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14595.2753.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKL4_ECTSI3.990e-1038.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14595contigH-paniculata_contig14595:2597..4305 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.8
Seed ortholog evalue3.9e-09
Seed eggNOG ortholog2880.D8LKL4
Hectar predicted targeting categoryother localisation
EggNOG OGs28Z2M@1,2R5WT@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size355
Cds size351
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929161.023857-CDS-H-paniculata_contig14595:2596..28681622929161.023857-CDS-H-paniculata_contig14595:2596..2868Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14595 2597..2868 +
1691480754.7105782-CDS-H-paniculata_contig14595:2596..28681691480754.7105782-CDS-H-paniculata_contig14595:2596..2868Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14595 2597..2868 +
1622929161.0363688-CDS-H-paniculata_contig14595:4224..43031622929161.0363688-CDS-H-paniculata_contig14595:4224..4303Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14595 4225..4303 +
1691480754.7223065-CDS-H-paniculata_contig14595:4224..43031691480754.7223065-CDS-H-paniculata_contig14595:4224..4303Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14595 4225..4303 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14595.2753.1prot_H-paniculata_contig14595.2753.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14595 2597..4303 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14595.2753.1

>prot_H-paniculata_contig14595.2753.1 ID=prot_H-paniculata_contig14595.2753.1|Name=mRNA_H-paniculata_contig14595.2753.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=117bp
ELLDIPAEFLQRAFASGHSLQLHYEFLGRREAIPLESRARLLRRCHHVAK
RTVPGLSTERTHTKAKEREEKDRASRDGRRGMVHLPVNYFRVFSFLSPAT
SLKGGLPKGSGLDKFLS
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mRNA from alignment at H-paniculata_contig14595:2597..4305+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14595.2753.1 ID=mRNA_H-paniculata_contig14595.2753.1|Name=mRNA_H-paniculata_contig14595.2753.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1709bp|location=Sequence derived from alignment at H-paniculata_contig14595:2597..4305+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGCTCCTAGATATACCGGCAGAGTTTTTGCAGAGAGCGTTTGCCAGCGG
TCACTCTCTGCAGCTACATTACGAGTTTTTGGGCCGAAGAGAAGCCATAC
CTCTAGAAAGTCGCGCACGGCTGCTACGACGATGTCACCATGTGGCAAAA
AGGACAGTGCCCGGGCTATCAACTGAACGGACACACACAAAGGCAAAGGA
ACGAGAAGAGAAGGATCGGGCTTCTCGAGACGGGCGCCGCGGCATGGTTC
ACCTGCCGGTGAACTATTTCAGGTATCTGTGTATGTAAGGGGTGCTAGTA
GTGCTGCGGGTCGACCGACAGAGGAATATAGGCAGTGGGCGATGACCTGA
CGGTGTGAGAAACTACGCCCTCGAACGCACCTCAAACACTCGTTCGCTGG
GGAGAGAAGGAGGTACACGATTACCTACAACGATATTTGTACCAAGCTAT
TCAGCAGATTCCGTAGTTATCCCGCGCACGGGATGGGTGTTGGATGTGCG
TCAAGGAGGTGTGCCAGGAAAAAAGGCAGCGATGGCCGGGGCGGAGAGAT
GGGTTGACAACACGTGGTTGATTGACACTGGGAAATGGACACTTGAATTT
TTTTTGTATTTTTGATAAAGTTAATATTTTTTTACACTCTCGAATCCTCG
GAGACAGGAGGGGGCGAGGGTGTACTCATATTTTGCGTGTCGTAGTTGTG
AGAATATTTACCACTCATCCTCGGCAGGACGAAGCTTCGTTCCTGTTCGA
GCGATTTCTGATGCCAAATTGCTCTTTCCTACCTTGCCAAATGCAGCTCG
CAAATTTTGTACCTACCTTATCTACCTCAATTCGCGCGTCTTGAGGCCAA
TTTCTACCTCCTGGAACCGCGGTAGCCCTTTTCTCGCAATCCCAGGGTTC
AAATTCCTCTCTAGGACGTCCTAGATTTCTTTATATTTTTCATGGAGGAG
GGATTTTCCCACGGCGTGGATTCGGTCCTGGCACACACGACCGCAGACAA
GAGGGGGAGGGGGGGGGCTAAAAACTTTACTGCATAAAGCTCTGGAGCTC
TAGCTGGCAAACTTTAACTGGGGCCTTCATAACCAATATATGTTTTCTCA
GGTGCATCAAAATATCTTTGAATGATACATGGAAATATCTCCATTTGTAA
TCATAGCTCTAGGGGGGACATGACGCATCTGTCGTTTGGGTTGAAACAGC
CTATCAGCAAGGTGTTGGCCACGGATGCGAGTGAGATAAAGACTGGTACT
GCTTGACAGTTTCGACCTTTCGCGGCTGCGATACTCACTGCTTGAATGCC
CACGAAGTGCAAACGGTATAACGATGCCCCCCTACCTTGCCCCTAATTTG
GTCTGCTTGTATTGAATCAGTCATCACTCAGCATTATAAAGTAACTGAGT
ATACCCCCACTTTTGATTCATGGTTACTGGCTATATTATCTATTTGTAAT
TGTATGTGTTTCAAATCGTACCCCCATGTTGTTCCCTCTCCCCGTCCCTC
CCCACCCCCGCTCCCATCCCCATCCTCGCTGTACATTTCCGCTTATGACA
TACACTATCCCACTATCCATGTGGTCTGCCTCTCGCGACACCGCACGCCC
CCTTTATGTGTGCAACAAATACAACAAGGGTGTTCTCTTTCCTGTCTCCA
GCAACGTCATTGAAGGGGGGGCTGCCCAAAGGCAGTGGCCTGGACAAGTT
CCTGTCCGC
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Coding sequence (CDS) from alignment at H-paniculata_contig14595:2597..4305+

>mRNA_H-paniculata_contig14595.2753.1 ID=mRNA_H-paniculata_contig14595.2753.1|Name=mRNA_H-paniculata_contig14595.2753.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at H-paniculata_contig14595:2597..4305+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGCTCCTAGATATACCGGCAGAGTTTTTGCAGAGAGCGTTTGCCAGCGG
TCACTCTCTGCAGCTACATTACGAGTTTTTGGGCCGAAGAGAAGCCATAC
CTCTAGAAAGTCGCGCACGGCTGCTACGACGATGTCACCATGTGGCAAAA
AGGACAGTGCCCGGGCTATCAACTGAACGGACACACACAAAGGCAAAGGA
ACGAGAAGAGAAGGATCGGGCTTCTCGAGACGGGCGCCGCGGCATGGTTC
ACCTGCCGGTGAACTATTTCAGGAGCTCCTAGATATACCGGCAGAGTTTT
TGCAGAGAGCGTTTGCCAGCGGTCACTCTCTGCAGCTACATTACGAGTTT
TTGGGCCGAAGAGAAGCCATACCTCTAGAAAGTCGCGCACGGCTGCTACG
ACGATGTCACCATGTGGCAAAAAGGACAGTGCCCGGGCTATCAACTGAAC
GGACACACACAAAGGCAAAGGAACGAGAAGAGAAGGATCGGGCTTCTCGA
GACGGGCGCCGCGGCATGGTTCACCTGCCGGTGAACTATTTCAGGGTGTT
CTCTTTCCTGTCTCCAGCAACGTCATTGAAGGGGGGGCTGCCCAAAGGCA
GTGGCCTGGACAAGTTCCTGTCCGGTGTTCTCTTTCCTGTCTCCAGCAAC
GTCATTGAAGGGGGGGCTGCCCAAAGGCAGTGGCCTGGACAAGTTCCTGT
CC
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