mRNA_H-paniculata_contig14585.2746.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14585.2746.1
Unique NamemRNA_H-paniculata_contig14585.2746.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14585.2746.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14585contigH-paniculata_contig14585:2496..4564 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size413
Cds size288
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14585.2746.1prot_H-paniculata_contig14585.2746.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14585 2496..4440 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929160.2026672-CDS-H-paniculata_contig14585:2495..25521622929160.2026672-CDS-H-paniculata_contig14585:2495..2552Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14585 2496..2552 -
1691480754.3142793-CDS-H-paniculata_contig14585:2495..25521691480754.3142793-CDS-H-paniculata_contig14585:2495..2552Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14585 2496..2552 -
1622929160.2175179-CDS-H-paniculata_contig14585:4209..44401622929160.2175179-CDS-H-paniculata_contig14585:4209..4440Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14585 4210..4440 -
1691480754.324281-CDS-H-paniculata_contig14585:4209..44401691480754.324281-CDS-H-paniculata_contig14585:4209..4440Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14585 4210..4440 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929160.232206-UTR-H-paniculata_contig14585:4440..45641622929160.232206-UTR-H-paniculata_contig14585:4440..4564Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14585 4441..4564 -
1691480754.3338335-UTR-H-paniculata_contig14585:4440..45641691480754.3338335-UTR-H-paniculata_contig14585:4440..4564Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14585 4441..4564 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14585.2746.1

>prot_H-paniculata_contig14585.2746.1 ID=prot_H-paniculata_contig14585.2746.1|Name=mRNA_H-paniculata_contig14585.2746.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=96bp
MTRVCIFNETPARCRWRCCAPVSGVYGQSRRYSKSALYGISSSQPLIRRC
AFEGSKAFSTMYPVGSKAVTAGISQDETVAGVWMPSSSCSMRVSPG
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mRNA from alignment at H-paniculata_contig14585:2496..4564-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14585.2746.1 ID=mRNA_H-paniculata_contig14585.2746.1|Name=mRNA_H-paniculata_contig14585.2746.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2069bp|location=Sequence derived from alignment at H-paniculata_contig14585:2496..4564- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCTATTTACGAAACCGGAGCTGTTGACCAAAAGTTGCAATCATTTTTCG
TTTTTCGTGTTATGTCATAGATTATGTTGGAGAGGTTGCTATTTGACCAA
TCTGTTCGGAACCTTATGCTATAGATGACGCGGGTGTGTATCTTTAATGA
AACTCCGGCGCGATGTCGATGGCGCTGTTGCGCTCCCGTGTCAGGTGTGT
ACGGCCAGTCAAGGCGGTACAGCAAATCCGCACTGTACGGTATCTCATCG
TCGCAGCCTCTGATACGTAGGTGTGCTTTCGAGGGCTCTAAGGCCTTCTC
TACAATGTACCCCGTCGGATCCAAAGCGGTGACAGCTGGCATCTCTCAAG
ACGAGGTGGGTAGACAATCAGGTGAGAGAGACGCCAGACAGGTCTGTACA
CTCATGAATTTAGCGATTTAGGGCAGCATGTATTAACCGGCGGTTATACG
CAGATTCCCAAGGGGTGCTTTGGTGTTCACATCTGTATCAAGTAGTAGGG
CGAGGCCTCTCGGGTCACAGCTCACTTTGAATGAGAGCTTTCGTTAGTAG
AGTCCGAATTCACTAGTCGTTGGTTGTGTTGGGTGTTGCTTCTTCGGCAT
CCAAAGTGCTGGTTTATTATGCTCATCCTAGTACGGAAACATGGTTATTT
CGCGCTTTCTCTCAACCAGCGATGAGAAGACGAGAATCCTACTGGTGAGG
GTAAATGCTTCTATTCAGGCACACCCAAGGCACTCGTGTGCAACGTTATC
ATTTGTGAGAACTACTGTACGAAGGGTTGGAGGGTCCTGAAGGTATCTCA
TGGCAGCTAAAATAATATTAAAAGCAGCACACGGTGTGATGGTAATAAAG
AAAAAACATTACACCGCTGGAGATGAAGCCACTAATATGAGGTACCTTTG
ACAGTGAGAAAAAGGTACGAGAAGCAGGCTGTCCGTATCAAGAGACGGTT
CATGTTGTCGAACTCGCTACTAGTACTCCTTTTGACTCCCGTACCGTTGG
AAATGCTGTTATTCTATTGAGTAGAGAAATAAATAATATGATGACCCAGG
GACAAAATCGCGCTATCCCCTGAATATTTGGTTGTCAGCTGTATTCTTGA
CAGCATGTTAAGGCGTGCTCGACCGGCGTGTGTTTCGTGTTTTCATTTTT
TCATTCTACCTTTTATATGTGGAAAATCCTCTAAAGTCACACTGGAATCA
GTGCTGGATCAAAGTTAGTATGAGCGTGTTCAACTTAGGCTTTAGCGCCC
CTTCTCCCCCAAAGCCCTTGCTGATCACTTGAAAACTATTTGTGGAAACT
AGCATGGAACGCGATTTTCTACTTCTGGACAAGGATTCCAAATCTGAAGG
GAGTTTTGCAAAATTCGAACAGTCTGGGCTAGTTTCTTCAAAGTCACGGC
GCTTTGAAGGTTTTCGAAGCACCTTGTGATAACCAAGACGGGATTTCTCG
GAACAACTCGCCGAACAATTTTGGGGCATACTCATCGGTCCTACTCCTCG
GATATGAATATTTCCGTTCCTAACGCGATTATGATTGAACATCTGAGGAG
AAAATGTACATCTGTTCGATGGCCAATGTACATGAATTTTCAGTGGTCGA
GGTGGTTGGCAAGTAGATTGAGATTATTCGGAGCAGGTTAGTGCTTACTT
ATGGTGCTACTTGTCCTTCTGCTGAGTGTTCGGAAGCGAGGTCTCGCGGA
GGCCATGATGTCGGTTACATTTCTAAAGCATGCAGTCGAAAGAGTAACCA
TGGTGGCCATTGACTATTGTACCAATAGTTGTACCCATCACGATCCAGGG
GCGCTTGTCGCTGAGCAATCATGTGAGACCGAGTTTCGTGCCGTGAAACT
ATCTTGGTGCATTGACAGCGATAGTCGGACTGCAGCGATGCTTGTGTACG
GCGACACCGTGTTTTGACTAGTAATATTCGTGTACGGTCATTGCACTGTT
GGGCACAAATCTCACATGTACATATGAGCCAACGATTATTGTTCATTTTG
CCGTTACTCCAGACTGTGGCCGGTGTGTGGATGCCTTCATCATCGTGCTC
GATGAGAGTCTCTCCGGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig14585:2496..4564-

>mRNA_H-paniculata_contig14585.2746.1 ID=mRNA_H-paniculata_contig14585.2746.1|Name=mRNA_H-paniculata_contig14585.2746.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=576bp|location=Sequence derived from alignment at H-paniculata_contig14585:2496..4564- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGCGGGTGTGTATCTTTAATGAAACTCCGGCGCGATGTCGATGGCG
CTGTTGCGCTCCCGTGTCAGGTGTGTACGGCCAGTCAAGGCGGTACAGCA
AATCCGCACTGTACGGTATCTCATCGTCGCAGCCTCTGATACGTAGGTGT
GCTTTCGAGGGCTCTAAGGCCTTCTCTACAATGTACCCCGTCGGATCCAA
AGCGGTGACAGCTGGCATCTCTCAAGACGAGATGACGCGGGTGTGTATCT
TTAATGAAACTCCGGCGCGATGTCGATGGCGCTGTTGCGCTCCCGTGTCA
GGTGTGTACGGCCAGTCAAGGCGGTACAGCAAATCCGCACTGTACGGTAT
CTCATCGTCGCAGCCTCTGATACGTAGGTGTGCTTTCGAGGGCTCTAAGG
CCTTCTCTACAATGTACCCCGTCGGATCCAAAGCGGTGACAGCTGGCATC
TCTCAAGACGAGACTGTGGCCGGTGTGTGGATGCCTTCATCATCGTGCTC
GATGAGAGTCTCTCCGGGCACTGTGGCCGGTGTGTGGATGCCTTCATCAT
CGTGCTCGATGAGAGTCTCTCCGGGC
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