mRNA_H-paniculata_contig14504.2701.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14504.2701.1
Unique NamemRNA_H-paniculata_contig14504.2701.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig14504.2701.1 vs. uniprot
Match: A0A8F0FD23_9PHAE (ATP synthase subunit a n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0FD23_9PHAE)

HSP 1 Score: 330 bits (846), Expect = 1.160e-112
Identity = 174/196 (88.78%), Postives = 188/196 (95.92%), Query Frame = 1 
Query:    1 VPNKWQFLFEGIYSMCIELIYDILGIKGEKYFPFIFSTFLIILLLNSLGLIPYSFTVTSQLATTLVFAYMIFIGVLIIGIHAHGFNFMGMFLPAGTSLALSFLLVPVELLSYFFKPVSLGVRLFANLMAGHTLLKVIIGFSWAMLGIGGIFLIIYLIPLSAIVVLFILETAVSIIQAYVFTILTTIYLNDAISLSH 588
            VPN+WQFLFEGIYSMCIELIYD+LGIKGEK+FPF+FSTFL+IL LNSLGLIPYSFT+TSQLA+TLVFAYMIFIGVLI+G+ +HGFN M MFLPAGTSL LSFLL+PVELLSYFFKPVSLGVRLFANLMAGHTLLKVIIGFSWAMLGIGGI+LIIYLIPL AIV LF+LETAVSIIQ+YVFTILTTIYLND ISLSH
Sbjct:   54 VPNRWQFLFEGIYSMCIELIYDVLGIKGEKFFPFLFSTFLVILSLNSLGLIPYSFTITSQLASTLVFAYMIFIGVLIVGVQSHGFNLMSMFLPAGTSLFLSFLLIPVELLSYFFKPVSLGVRLFANLMAGHTLLKVIIGFSWAMLGIGGIYLIIYLIPLGAIVSLFVLETAVSIIQSYVFTILTTIYLNDMISLSH 249
[Close]
BLAST of mRNA_H-paniculata_contig14504.2701.1 vs. uniprot
Match: Q2TUB2_DICDH (ATP synthase subunit a n=1 Tax=Dictyota dichotoma TaxID=2876 RepID=Q2TUB2_DICDH)

HSP 1 Score: 234 bits (598), Expect = 6.010e-75
Identity = 122/194 (62.89%), Postives = 155/194 (79.90%), Query Frame = 1 
Query:    1 VPNKWQFLFEGIYSMCIELIYDILGIKGEKYFPFIFSTFLIILLLNSLGLIPYSFTVTSQLATTLVFAYMIFIGVLIIGIHAHGFNFMGMFLPAGTSLALSFLLVPVELLSYFFKPVSLGVRLFANLMAGHTLLKVIIGFSWAMLGIGGIFLIIYLIPLSAIVVLFILETAVSIIQAYVFTILTTIYLNDAISL 582
            VP +WQ +FEG+Y +   LI+D +G +G+KYFPFIF+ F  +L+ N  GL PYSFT TS L  TLV AY +FIGV+II    HGF+ + +FLP GTSL L+FLLVP+E++SY FKPVSL VRLFAN+MAGHTLLKVI+GF+WAM+G GG+ LI++L+PL  +VVLF LE AVS+IQAYVFTIL+ IY+NDA+ L
Sbjct:   56 VPTRWQLIFEGLYEVAAGLIWDSVGPRGQKYFPFIFTIFFFVLVSNVSGLAPYSFTTTSHLIQTLVLAYTVFIGVMIICAGVHGFHMLSLFLPGGTSLGLAFLLVPIEVISYIFKPVSLAVRLFANMMAGHTLLKVIVGFAWAMVGSGGLLLIVHLVPLLVLVVLFGLELAVSLIQAYVFTILSCIYINDALVL 249
[Close]
BLAST of mRNA_H-paniculata_contig14504.2701.1 vs. uniprot
Match: A0A4Y5T8Z6_9PHAE (ATP synthase subunit a n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A4Y5T8Z6_9PHAE)

HSP 1 Score: 232 bits (591), Expect = 6.930e-74
Identity = 120/194 (61.86%), Postives = 154/194 (79.38%), Query Frame = 1 
Query:    1 VPNKWQFLFEGIYSMCIELIYDILGIKGEKYFPFIFSTFLIILLLNSLGLIPYSFTVTSQLATTLVFAYMIFIGVLIIGIHAHGFNFMGMFLPAGTSLALSFLLVPVELLSYFFKPVSLGVRLFANLMAGHTLLKVIIGFSWAMLGIGGIFLIIYLIPLSAIVVLFILETAVSIIQAYVFTILTTIYLNDAISL 582
            VP +WQ + E +Y     LI+D +G +G+KYFPFIFS FL +LL N  GL PYSFT TS L  T+V AY +FIGV+II    HGF+ + +FLP GTSL L+FLLVP+E++SY FKPVSL VRLFAN+MAGHTLLKVI+GF+W+M+G GG+ LI++++PL+ +VVLF LE AVS+IQAYVFTIL+ IY+NDA+ L
Sbjct:   56 VPVRWQLILESLYETAAGLIWDSVGARGQKYFPFIFSIFLFVLLSNVSGLAPYSFTTTSHLVQTMVLAYTVFIGVMIICAGVHGFHMLSLFLPGGTSLGLAFLLVPIEIISYVFKPVSLAVRLFANMMAGHTLLKVIVGFAWSMIGSGGLLLIVHIVPLAVLVVLFGLELAVSLIQAYVFTILSCIYINDALVL 249
[Close]
BLAST of mRNA_H-paniculata_contig14504.2701.1 vs. uniprot
Match: A0A343C631_FUCDI (ATP synthase subunit a n=3 Tax=Fucus TaxID=3011 RepID=A0A343C631_FUCDI)

HSP 1 Score: 223 bits (567), Expect = 2.930e-70
Identity = 117/193 (60.62%), Postives = 150/193 (77.72%), Query Frame = 1 
Query:    4 PNKWQFLFEGIYSMCIELIYDILGIKGEKYFPFIFSTFLIILLLNSLGLIPYSFTVTSQLATTLVFAYMIFIGVLIIGIHAHGFNFMGMFLPAGTSLALSFLLVPVELLSYFFKPVSLGVRLFANLMAGHTLLKVIIGFSWAMLGIGGIFLIIYLIPLSAIVVLFILETAVSIIQAYVFTILTTIYLNDAISL 582
            PN+WQ L EG+Y     LI+D +G  G+KYFPFIF  F  IL+ N  GL+PYSFT+TS L  T+V A  +FIGV+II    HGF+ + +FLP GTSL L+FLLVP+E++SY FKP+SL VRLFAN+MAGHTLLKVI GF+WAM+G GG+ L+ +++PL  +V+LF LE AV++IQAYVFTIL+ IY+NDAI L
Sbjct:   56 PNRWQLLIEGLYLTTAGLIWDSIGPAGQKYFPFIFMIFSFILISNVSGLVPYSFTITSHLIQTMVLALSVFIGVVIICASTHGFHMLSLFLPGGTSLTLAFLLVPIEIVSYVFKPLSLAVRLFANMMAGHTLLKVIAGFAWAMMGSGGLLLLAHIVPLVVLVILFGLELAVALIQAYVFTILSCIYINDAIVL 248
[Close]
BLAST of mRNA_H-paniculata_contig14504.2701.1 vs. uniprot
Match: A0A1I9LW45_9PHAE (ATP synthase subunit a n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LW45_9PHAE)

HSP 1 Score: 221 bits (564), Expect = 8.340e-70
Identity = 112/193 (58.03%), Postives = 152/193 (78.76%), Query Frame = 1 
Query:    4 PNKWQFLFEGIYSMCIELIYDILGIKGEKYFPFIFSTFLIILLLNSLGLIPYSFTVTSQLATTLVFAYMIFIGVLIIGIHAHGFNFMGMFLPAGTSLALSFLLVPVELLSYFFKPVSLGVRLFANLMAGHTLLKVIIGFSWAMLGIGGIFLIIYLIPLSAIVVLFILETAVSIIQAYVFTILTTIYLNDAISL 582
            P +WQ + EG+Y+    LI+D +G++G+KYFPF+F  F  IL+ N  GL+PYSFT+TS L  T+V A  +FIGV+II +  HGF+ + +FLP GTS+ L+FLL+P+E++SY FKP+SL VRLFAN+MAGHTLLKVI GF+W M+G GG+ L+ ++IPL  +V+LF LE AV++IQAYVFTIL+ IY+NDAI L
Sbjct:   56 PTRWQLILEGLYTTTAGLIWDSVGLQGQKYFPFLFVIFSSILISNLSGLVPYSFTITSHLIQTMVLALTVFIGVIIICVSKHGFHMLSLFLPGGTSIILAFLLIPIEIVSYIFKPLSLAVRLFANMMAGHTLLKVIAGFAWTMMGSGGLLLVAHIIPLGVLVILFGLELAVALIQAYVFTILSCIYINDAIVL 248
[Close]
BLAST of mRNA_H-paniculata_contig14504.2701.1 vs. uniprot
Match: A0A0U1WNN5_SARFS (ATP synthase subunit a n=24 Tax=Sargassaceae TaxID=3014 RepID=A0A0U1WNN5_SARFS)

HSP 1 Score: 219 bits (558), Expect = 6.770e-69
Identity = 114/193 (59.07%), Postives = 151/193 (78.24%), Query Frame = 1 
Query:    4 PNKWQFLFEGIYSMCIELIYDILGIKGEKYFPFIFSTFLIILLLNSLGLIPYSFTVTSQLATTLVFAYMIFIGVLIIGIHAHGFNFMGMFLPAGTSLALSFLLVPVELLSYFFKPVSLGVRLFANLMAGHTLLKVIIGFSWAMLGIGGIFLIIYLIPLSAIVVLFILETAVSIIQAYVFTILTTIYLNDAISL 582
            P++WQ L E +Y     LI+D +G+ G+KYFPFIF  F  IL+ N  GL+PYSFT+TS L  T+V A  +FIGV++I    HGF+ + +FLP GTSL L+FLLVP+E++SY FKP+SL VRLFAN+MAGHTLLKVI GF+WAM+G GG+ LI +++PL  +++LF LE AV++IQAYVFTIL+ IY+NDAI+L
Sbjct:   56 PSRWQLLLERLYLTTAGLIWDSIGLHGQKYFPFIFMIFSFILISNVSGLVPYSFTITSHLIQTMVLALGVFIGVVLICASTHGFHMLSLFLPGGTSLPLAFLLVPIEIVSYIFKPLSLAVRLFANMMAGHTLLKVIAGFAWAMMGSGGLLLIAHVVPLLVLIILFGLELAVALIQAYVFTILSCIYINDAIAL 248
[Close]
BLAST of mRNA_H-paniculata_contig14504.2701.1 vs. uniprot
Match: A0A089MYN0_PETFA (ATP synthase subunit a n=18 Tax=Ectocarpales TaxID=2877 RepID=A0A089MYN0_PETFA)

HSP 1 Score: 219 bits (557), Expect = 9.590e-69
Identity = 112/193 (58.03%), Postives = 150/193 (77.72%), Query Frame = 1 
Query:    4 PNKWQFLFEGIYSMCIELIYDILGIKGEKYFPFIFSTFLIILLLNSLGLIPYSFTVTSQLATTLVFAYMIFIGVLIIGIHAHGFNFMGMFLPAGTSLALSFLLVPVELLSYFFKPVSLGVRLFANLMAGHTLLKVIIGFSWAMLGIGGIFLIIYLIPLSAIVVLFILETAVSIIQAYVFTILTTIYLNDAISL 582
            P +WQ + E +Y     LI+D +G KG+KYFPF+F  F  IL+ N  GL+PYSFT+TS L  T+V A  +FIGV+II    HGF+ + +FLP GTS+ L+FLLVP+E++SY FKP+SL VRLFAN+MAGHTLLKVI GF+WAM+G GG+ L+ +++PL  +++LF LE AV++IQAYVFTIL+ IY+NDAI+L
Sbjct:   56 PTRWQLILESLYVSTAGLIWDSIGPKGQKYFPFLFVIFSFILISNVSGLVPYSFTITSHLIQTMVLALTVFIGVMIICGSTHGFHMLSLFLPGGTSMVLAFLLVPIEIVSYIFKPLSLAVRLFANMMAGHTLLKVIAGFAWAMMGSGGLLLLAHIVPLGVLIILFGLELAVALIQAYVFTILSCIYINDAIAL 248
[Close]
BLAST of mRNA_H-paniculata_contig14504.2701.1 vs. uniprot
Match: E6ZES4_ECTSI (ATP synthase subunit a n=65 Tax=Phaeophyceae TaxID=2870 RepID=E6ZES4_ECTSI)

HSP 1 Score: 216 bits (550), Expect = 1.100e-67
Identity = 112/193 (58.03%), Postives = 149/193 (77.20%), Query Frame = 1 
Query:    4 PNKWQFLFEGIYSMCIELIYDILGIKGEKYFPFIFSTFLIILLLNSLGLIPYSFTVTSQLATTLVFAYMIFIGVLIIGIHAHGFNFMGMFLPAGTSLALSFLLVPVELLSYFFKPVSLGVRLFANLMAGHTLLKVIIGFSWAMLGIGGIFLIIYLIPLSAIVVLFILETAVSIIQAYVFTILTTIYLNDAISL 582
            P +WQ + E +Y     LI+D +G +G+KYFPF+F  F  IL+ N  GL+PYSFT+TS L  T+V A  +FIGV+II    HGF+ + +FLP GTS+ L+FLLVP+E++SY FKP+SL VRLFAN+MAGHTLLKVI GF+WAM+G GG+ L+ +++PL  +V+LF LE AV++IQAYVFTIL+ IY+NDAI L
Sbjct:   56 PTRWQLVLESLYISTAGLIWDSVGPQGQKYFPFLFVVFSFILISNVSGLVPYSFTITSHLIQTMVLALTVFIGVMIICGSTHGFHMLSLFLPGGTSIVLAFLLVPIEIVSYIFKPLSLAVRLFANMMAGHTLLKVIAGFAWAMMGSGGLLLVAHVVPLGVLVILFGLELAVALIQAYVFTILSCIYINDAIVL 248
[Close]
BLAST of mRNA_H-paniculata_contig14504.2701.1 vs. uniprot
Match: A0A8F0FD27_9PHAE (ATP synthase subunit a n=1 Tax=Analipus japonicus TaxID=31333 RepID=A0A8F0FD27_9PHAE)

HSP 1 Score: 216 bits (550), Expect = 1.100e-67
Identity = 113/193 (58.55%), Postives = 149/193 (77.20%), Query Frame = 1 
Query:    4 PNKWQFLFEGIYSMCIELIYDILGIKGEKYFPFIFSTFLIILLLNSLGLIPYSFTVTSQLATTLVFAYMIFIGVLIIGIHAHGFNFMGMFLPAGTSLALSFLLVPVELLSYFFKPVSLGVRLFANLMAGHTLLKVIIGFSWAMLGIGGIFLIIYLIPLSAIVVLFILETAVSIIQAYVFTILTTIYLNDAISL 582
            P++WQ + E  Y     LI+D +G +G+KYFPFIF+ F  +L+ N  GL+PYSFT+TS L  T+V A M+FIGV+II    HGF+ + +FLP GTSL L+FLLVP+E++SY FKP+SL VRLFAN+MAGHTLLKVI GF+WAM+G GG+ LI +++PL  +V+LF LE  V+ IQAYVFTIL+ IY+NDA+ L
Sbjct:   56 PSRWQLVLESFYLTTAGLIWDSVGPQGQKYFPFIFAIFSFVLISNVSGLVPYSFTITSHLVQTMVLALMVFIGVVIICGSTHGFHMVSLFLPGGTSLPLAFLLVPIEIVSYVFKPISLAVRLFANMMAGHTLLKVIAGFAWAMMGSGGLLLIAHMLPLVVLVILFGLELGVAFIQAYVFTILSCIYINDALVL 248
[Close]
BLAST of mRNA_H-paniculata_contig14504.2701.1 vs. uniprot
Match: D2Z223_9STRA (ATP synthase subunit a n=1 Tax=Chattonella marina TaxID=90936 RepID=D2Z223_9STRA)

HSP 1 Score: 208 bits (529), Expect = 1.780e-64
Identity = 112/194 (57.73%), Postives = 143/194 (73.71%), Query Frame = 1 
Query:    1 VPNKWQFLFEGIYSMCIELIYDILGIKGEKYFPFIFSTFLIILLLNSLGLIPYSFTVTSQLATTLVFAYMIFIGVLIIGIHAHGFNFMGMFLPAGTSLALSFLLVPVELLSYFFKPVSLGVRLFANLMAGHTLLKVIIGFSWAMLGIGGIFLIIYLIPLSAIVVLFILETAVSIIQAYVFTILTTIYLNDAISL 582
            +P  WQ L E +Y     ++ D +G KG+KYFPFIF+ F  +L+ N +GL+PYSFT+TS L  T   A ++FIGV II I  HG + + +F+P+GTSL L+FLLVP+E++SY FKPVSL VRLFAN+MAGHTLLKVI GFSWAM+G GG   + + IPL  +V+L  LE  V+IIQ YVFTILT IYLND I+L
Sbjct:   57 IPKTWQLLIETLYETVSAMVVDNVGEKGQKYFPFIFTLFTFVLISNLIGLVPYSFTITSHLILTFGLALIVFIGVNIICIKHHGIHMLSLFMPSGTSLGLAFLLVPIEIVSYIFKPVSLAVRLFANMMAGHTLLKVIAGFSWAMMGGGGFLFLGHFIPLIVLVLLVGLELGVAIIQGYVFTILTCIYLNDGINL 250
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14504.2701.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8F0FD23_9PHAE1.160e-11288.78ATP synthase subunit a n=1 Tax=Protohalopteris sp.... [more]
Q2TUB2_DICDH6.010e-7562.89ATP synthase subunit a n=1 Tax=Dictyota dichotoma ... [more]
A0A4Y5T8Z6_9PHAE6.930e-7461.86ATP synthase subunit a n=1 Tax=Dictyopteris divari... [more]
A0A343C631_FUCDI2.930e-7060.62ATP synthase subunit a n=3 Tax=Fucus TaxID=3011 Re... [more]
A0A1I9LW45_9PHAE8.340e-7058.03ATP synthase subunit a n=1 Tax=Pleurocladia lacust... [more]
A0A0U1WNN5_SARFS6.770e-6959.07ATP synthase subunit a n=24 Tax=Sargassaceae TaxID... [more]
A0A089MYN0_PETFA9.590e-6958.03ATP synthase subunit a n=18 Tax=Ectocarpales TaxID... [more]
E6ZES4_ECTSI1.100e-6758.03ATP synthase subunit a n=65 Tax=Phaeophyceae TaxID... [more]
A0A8F0FD27_9PHAE1.100e-6758.55ATP synthase subunit a n=1 Tax=Analipus japonicus ... [more]
D2Z223_9STRA1.780e-6457.73ATP synthase subunit a n=1 Tax=Chattonella marina ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14504contigH-paniculata_contig14504:5804..6394 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score182.2
Seed ortholog evalue2.4e-43
Seed eggNOG ortholog45157.CMW027CT
Preferred nameATP6
KEGG koko:K02126
KEGG TC3.A.2.1
KEGG Pathwayko00190,ko01100,ko04714,ko05010,ko05012,ko05016,map00190,map01100,map04714,map05010,map05012,map05016
KEGG ModuleM00158
Hectar predicted targeting categorysignal anchor
GOsGO:0000276,GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005753,GO:0006091,GO:0006119,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006839,GO:0006950,GO:0006996,GO:0007005,GO:0007006,GO:0007007,GO:0007275,GO:0007568,GO:0008150,GO:0008152,GO:0008324,GO:0008340,GO:0008553,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009628,GO:0009987,GO:0010259,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015662,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016043,GO:0016310,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019725,GO:0019829,GO:0019866,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0032991,GO:0033177,GO:0034220,GO:0034641,GO:0034654,GO:0036296,GO:0036442,GO:0040011,GO:0042407,GO:0042592,GO:0042623,GO:0042625,GO:0042626,GO:0042776,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044769,GO:0045259,GO:0045263,GO:0046034,GO:0046390,GO:0046483,GO:0046716,GO:0046907,GO:0046933,GO:0048856,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0055086,GO:0055093,GO:0060249,GO:0061024,GO:0065007,GO:0065008,GO:0070050,GO:0070482,GO:0071704,GO:0071840,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098798,GO:0098800,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600,GO:1990542
EggNOG free text desc.ATP synthesis coupled proton transport
EggNOG OGsCOG0356@1,KOG4665@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03029
Exons1
Model size591
Cds size591
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929155.4525027-CDS-H-paniculata_contig14504:5803..63941622929155.4525027-CDS-H-paniculata_contig14504:5803..6394Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14504 5804..6394 +
1691480752.1100388-CDS-H-paniculata_contig14504:5803..63941691480752.1100388-CDS-H-paniculata_contig14504:5803..6394Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14504 5804..6394 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14504.2701.1prot_H-paniculata_contig14504.2701.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14504 5804..6394 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14504.2701.1

>prot_H-paniculata_contig14504.2701.1 ID=prot_H-paniculata_contig14504.2701.1|Name=mRNA_H-paniculata_contig14504.2701.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=197bp
VPNKWQFLFEGIYSMCIELIYDILGIKGEKYFPFIFSTFLIILLLNSLGL
IPYSFTVTSQLATTLVFAYMIFIGVLIIGIHAHGFNFMGMFLPAGTSLAL
SFLLVPVELLSYFFKPVSLGVRLFANLMAGHTLLKVIIGFSWAMLGIGGI
FLIIYLIPLSAIVVLFILETAVSIIQAYVFTILTTIYLNDAISLSH*
back to top

mRNA from alignment at H-paniculata_contig14504:5804..6394+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14504.2701.1 ID=mRNA_H-paniculata_contig14504.2701.1|Name=mRNA_H-paniculata_contig14504.2701.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=591bp|location=Sequence derived from alignment at H-paniculata_contig14504:5804..6394+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCCCTAATAAATGGCAATTTTTATTCGAGGGAATTTATTCCATGTGTAT
AGAATTGATTTATGATATTTTGGGCATAAAAGGAGAAAAATATTTTCCTT
TTATTTTTAGTACTTTTTTAATAATTTTATTATTAAATAGCTTAGGTTTA
ATTCCATACTCTTTTACAGTCACTAGTCAGTTAGCAACCACTTTAGTTTT
TGCTTATATGATTTTTATAGGAGTACTTATTATAGGTATTCATGCTCACG
GCTTCAATTTTATGGGCATGTTTTTACCTGCTGGTACTTCATTAGCTTTA
AGTTTTTTATTAGTTCCGGTTGAATTATTATCTTATTTTTTTAAGCCTGT
AAGTTTAGGGGTTCGTTTGTTTGCTAATCTTATGGCGGGCCATACCCTTT
TAAAAGTTATTATTGGTTTTAGTTGGGCAATGTTAGGTATTGGGGGTATT
TTTTTAATTATTTATTTAATACCGTTAAGTGCTATTGTTGTATTGTTTAT
ATTAGAAACAGCTGTTTCTATTATACAGGCTTACGTTTTTACTATTTTGA
CAACTATTTATTTAAATGACGCAATTAGTCTGAGTCATTAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig14504:5804..6394+

>mRNA_H-paniculata_contig14504.2701.1 ID=mRNA_H-paniculata_contig14504.2701.1|Name=mRNA_H-paniculata_contig14504.2701.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1182bp|location=Sequence derived from alignment at H-paniculata_contig14504:5804..6394+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCCCTAATAAATGGCAATTTTTATTCGAGGGAATTTATTCCATGTGTAT
AGAATTGATTTATGATATTTTGGGCATAAAAGGAGAAAAATATTTTCCTT
TTATTTTTAGTACTTTTTTAATAATTTTATTATTAAATAGCTTAGGTTTA
ATTCCATACTCTTTTACAGTCACTAGTCAGTTAGCAACCACTTTAGTTTT
TGCTTATATGATTTTTATAGGAGTACTTATTATAGGTATTCATGCTCACG
GCTTCAATTTTATGGGCATGTTTTTACCTGCTGGTACTTCATTAGCTTTA
AGTTTTTTATTAGTTCCGGTTGAATTATTATCTTATTTTTTTAAGCCTGT
AAGTTTAGGGGTTCGTTTGTTTGCTAATCTTATGGCGGGCCATACCCTTT
TAAAAGTTATTATTGGTTTTAGTTGGGCAATGTTAGGTATTGGGGGTATT
TTTTTAATTATTTATTTAATACCGTTAAGTGCTATTGTTGTATTGTTTAT
ATTAGAAACAGCTGTTTCTATTATACAGGCTTACGTTTTTACTATTTTGA
CAACTATTTATTTAAATGACGCAATTAGTCTGAGTCATTAAGTCCCTAAT
AAATGGCAATTTTTATTCGAGGGAATTTATTCCATGTGTATAGAATTGAT
TTATGATATTTTGGGCATAAAAGGAGAAAAATATTTTCCTTTTATTTTTA
GTACTTTTTTAATAATTTTATTATTAAATAGCTTAGGTTTAATTCCATAC
TCTTTTACAGTCACTAGTCAGTTAGCAACCACTTTAGTTTTTGCTTATAT
GATTTTTATAGGAGTACTTATTATAGGTATTCATGCTCACGGCTTCAATT
TTATGGGCATGTTTTTACCTGCTGGTACTTCATTAGCTTTAAGTTTTTTA
TTAGTTCCGGTTGAATTATTATCTTATTTTTTTAAGCCTGTAAGTTTAGG
GGTTCGTTTGTTTGCTAATCTTATGGCGGGCCATACCCTTTTAAAAGTTA
TTATTGGTTTTAGTTGGGCAATGTTAGGTATTGGGGGTATTTTTTTAATT
ATTTATTTAATACCGTTAAGTGCTATTGTTGTATTGTTTATATTAGAAAC
AGCTGTTTCTATTATACAGGCTTACGTTTTTACTATTTTGACAACTATTT
ATTTAAATGACGCAATTAGTCTGAGTCATTAA
back to top