mRNA_H-paniculata_contig145.2693.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig145.2693.1
Unique NamemRNA_H-paniculata_contig145.2693.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig145.2693.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig145contigH-paniculata_contig145:2905..6912 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons4
Model size813
Cds size813
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig145.2693.1prot_H-paniculata_contig145.2693.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig145 2905..6912 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929154.5018423-CDS-H-paniculata_contig145:2904..30631622929154.5018423-CDS-H-paniculata_contig145:2904..3063Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig145 2905..3063 -
1691480751.5928063-CDS-H-paniculata_contig145:2904..30631691480751.5928063-CDS-H-paniculata_contig145:2904..3063Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig145 2905..3063 -
1622929154.5247955-CDS-H-paniculata_contig145:4570..50721622929154.5247955-CDS-H-paniculata_contig145:4570..5072Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig145 4571..5072 -
1691480751.6038535-CDS-H-paniculata_contig145:4570..50721691480751.6038535-CDS-H-paniculata_contig145:4570..5072Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig145 4571..5072 -
1622929154.5410657-CDS-H-paniculata_contig145:6168..62681622929154.5410657-CDS-H-paniculata_contig145:6168..6268Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig145 6169..6268 -
1691480751.611541-CDS-H-paniculata_contig145:6168..62681691480751.611541-CDS-H-paniculata_contig145:6168..6268Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig145 6169..6268 -
1622929154.5529065-CDS-H-paniculata_contig145:6860..69121622929154.5529065-CDS-H-paniculata_contig145:6860..6912Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig145 6861..6912 -
1691480751.6194494-CDS-H-paniculata_contig145:6860..69121691480751.6194494-CDS-H-paniculata_contig145:6860..6912Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig145 6861..6912 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig145.2693.1

>prot_H-paniculata_contig145.2693.1 ID=prot_H-paniculata_contig145.2693.1|Name=mRNA_H-paniculata_contig145.2693.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=271bp
CRYAEEQRSSCCCCINKGSRSPLTIVNSIPEAPAGLAGTQSIGLYPFTMP
SRASITLAVLGVGVATILTTGFTLLSPLSPHKKVRDGSRCFQRSSEQYSS
LKVTSGCTHHEHHFKEGRRLCPNFRVLLPSPRPAASCVGSMPFCYGNGNA
WETTNGIKGGAENLVGTSWGGCRALGTTSGATVNVRTSALTVSAAGGRAA
AWPPGRGGSKVSAKPGSQSAKGSAVESKGGWLNIRSKQNSANANEATATD
SNGRGWGRRGGNGGSGGRDGG
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mRNA from alignment at H-paniculata_contig145:2905..6912-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig145.2693.1 ID=mRNA_H-paniculata_contig145.2693.1|Name=mRNA_H-paniculata_contig145.2693.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4008bp|location=Sequence derived from alignment at H-paniculata_contig145:2905..6912- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGTAGGTATGCCGAGGAGCAAAGGTCATCCTGCTGTTGCTGTATTAACAA
AGGTGAGACGTAGACAACCCTACGTGTAGGCTTGCAATGCTTAGTTCGGG
TTCAGGGGACACAGAGAAACAACAGCAGCGCTGGTGCATCCGTTTTCGCT
ACGTGTGTACAGTACTACAAATTAGCAGGTTCTGCTAAGTGTTCAAAGCT
CACAGAGTCGAGTACATCACCCTACAAGAAATATAGTAGGTGCACGCAGT
TGTAACAGACTGCAATGACTTCGCTTATCTCGTACCTCCAAAAATGAAGA
AATTGTGGCCAATGACGCGAGTTTATGTTTGCCTTCAAGGTGTCTGAAAT
AGGAACCGTTCCCTTCCCTTATCTCCCATCTACCAACGGAACATAGTTGT
ATTGTGCTGTGTACAATGAATTTCAGCATATCGTTGGGTTTGAAAAGCTA
ACGGCCGCATTGTTACAATAGATCTGTTATCGGCAGGATAACGTTGAGCG
TTGCAGCTTATCAAAGCAGAGTGAGATGCAGTCAGGAGCACAAGGGGTGT
GAACTGAACCTTGCTATGATAACGTGCGCTCACTAACTGGATCCTTGTTG
TGTGATGTGTTGCTGGCTGTTCACTCTGCCCACCGGTCACAAAGGTTCAA
GGTCGCCACTGACCATAGTCAATTCTATCCCCGAAGCGCCTGCTGGCCTG
GCGGGCACGCAAAGCATCGGACTATACCCATTTACCATGCCCAGGTGAGA
AGGAGCTGCCGGTTCGCATATTCATATAAAGCTACATACCTACCGCAGAT
TTCAGGACAATCGACCCGAGTATCGTGTTTCAGAAATAGATATTCTGGAG
GAACAACCTTCCACCCCCCAGACAAATACGAATAATTGGCCACGAAAATG
AAAAAGTATTCTCCTGGGTTTCAGAATGAGCGGACATATTAAATAAAGTA
CCGACCCCTGTCCATTCGAGTCACGAGTGTTATTGGCAGTCGTGGAAGGT
CCAGGGCACATAGAATACACGAGCTCATTCTGAAATTCAGGCGAATACTT
TTTTGCTTTATGGAGAATACGCCAATTTGTCCGGGGGCTGCAACCTTCGC
TCTTGTTTACAGAAGATGAATAGAACGTCTGTCCACCCAGTGACAAATTT
GAACGACGTCTTGATCTTCTCAGCGACATGACTTCCCTTGTGATGTTGTC
ATGTTGCCATGTTGTCACTTCCAACATCCTTGGTTTCAAGAAAGTCGGAG
GGGAAAAATAGTTGCGCGAGGGTGTTGTTTTAAACCCTGTAAATCGCCGT
CTATTGGTCTTGGTGCAGCGTTTCACAGATGCGCAATGTCTTTGAAGCAA
CATCCCATTTCATGGCAACCTGGGCGATTGCCAACACCAAAAGTTGTTCA
GGTGTTTCGCGCTGCTGTACTAAAAGTGATGTGTGTGTGTGGAGAGATGG
GTGCTGAATTTTCCCAACATGTATCACAGATTGATATATACCGAAATGCG
CTACTTCCTGCATATGATAGCATTCCCGTCCGGCTTTCAACAAAAGAAAA
TACCTAGCCTAGTCTCTAGATTCGCGGGGAATCTTGGTAGGCCTGGTCGT
TCACAGTAATCTTGACAGTATTACCGATCGCCTCCTGTCAGTCGTGCCTC
ATGCTTTACTCGTTTGCTGCGCTTGTCCTATCGTATCCGTTTCGCGCACG
TCTATCTTTCTTCTTTTTATTTGCTACATGGCCTTCCTTGCTCCGTTCCT
TCACCTTCTTCATCGTCATGATACTAATGTAATACAAAAATACCCACCGA
CGCGCGCGCGATATCGACATGGTGTCAAAATACTTTCCAGCCGAGCTAGC
ATCACGCTGGCGGTGCTGGGCGTGGGCGTGGCGACGATCCTAACCACCGG
GTTCACACTTTTGAGTCCACTTTCTCCGCATAAAAAAGTCCGCGACGGTA
GTCGATGCTTCCAAAGGTCGAGCGAGCAGTATAGCTCTCTCAAGGTCACA
TCTGGATGCACGCATCATGAGCACCACTTCAAAGAAGGCCGGCGATTGTG
CCCTAATTTCAGAGTACTTTTGCCATCGCCACGACCAGCCGCCTCCTGTG
TTGGATCGATGCCATTTTGCTATGGCAATGGCAATGCCTGGGAGACTACA
AACGGAATTAAAGGTGGAGCGGAAAATTTAGTGGGAACGAGTTGGGGGGG
CTGCAGGGCACTCGGCACCACGTCGGGTGCTACTGTCAATGTCAGAACTA
GTGCTCTCACGGTATCGGCGGCAGGAGGGCGCGCTGCGGCTTGGCCGCCG
GGGCGAGGTGGATCCAAGGTTTCGGCGAAGCCTGGATCTCAGGTGCCATT
TGTGGTGTGTTTTGATGCTACTGAATTGGAGTGAACTTGACTAGACTTGA
CTGGACTTGACTGGACTCGAAAGGTACATGAGACCAGTCAACCCACAAGT
GCCTCACTAACCTTTTCGTATGCAAGTGACGTGCTGACAAAATGTTGACA
ATAAACTATTGAATGAAGAGCGTTTTGGGGGCGTTTTCCTTAATGCCAAG
TGATTCAAGTGTCCTATACCTTTTTTCTCCCAATCTTGACCCGATGGGAG
ACGGGCTGCCCGGCAATGTGATTCGCATTATGTCGCCGAAGACCCTTCCG
GTTATTGTATATAGTAACCTCAAATCAAACAAAGCTGCTTTAAGATTTTG
TAGAGCTTTTTCTGGCACCGCGTTGTGTCAGCATCGAAGTTTGCTTCAAA
ATTTTCAGGATCGGACAAACATAACCGCCCAACATAACTGTTGAATTCTT
TTTGTTCGATTGAATTTGAGCGAGTTTCGGGCTTACCGGACATAGAAGTC
ATACCGTATAAACTTCTTGGAAAATGCACTTTTTCTTTTGCTCCAATCAA
TCCTGAAATTTTAATGCGCACAAACGGTTGCCTGAATAGTTTTAATAAGT
CAAAAATGCATCGAGCTACAGCCGAAAAAACGTGTTCATGGCCGTTTCGA
ATCAGATTTGGACAAGGATTTATTTGGGATCGTTTTTCGCATGTTTTTCA
ACATTGTGTCTTCTCATGATCGATAATTGGTCTGGAAACTTCAGAATTCA
TAAATTTTTGTTTGATGCATGGCATGATTCTGCAATATTCTGTGATGAGT
CTAATTTGTGCAAATTTCGGGTTTATCGGTCACCGGAAGTCATACCGTGT
AAACCTCTCAGACATTGAACTCTTTTTTCTTACTCGAATCACTCCCGAAT
GCTTGATGTTTTTCAATTGCTACAAATTTGGCGATCTACCGCCGAAAAGA
CGATAATGGAGGAGGAGGATGTTATATAGCGTATTTTGAACAGATATAAA
CGTCTTTTTACTACGTAGTGTTACGACTACAGTAAATTGGGACACTACTC
CCAACGACGACCTTTTCATCATGCCAACATCCGCTGATTCTCAATAATAT
GAGTTAGTTCCACAAAAACTCTATTTTTGGTCTATTTAGGTCAAAATCTG
AAGCAGTTTTGTTTCGCCCCAGGGTACTGCCGCAGGGAATCGGCGTTTCG
CATTCATGAATTTATTCCCCCAACACAGTGTAACTTGCTCATAGTAATTA
TGCACTAGTTCCCAGTGTGAGCTTGTTACATATTCTTCGATACTTCGTGG
TGTCAATGCGTATCGTGGAATGTCGTCGTGGATCTATTACAGAGTACGAT
TAACGCCGTGGGGAACAGGGGTACATTCTGTGATTCGTTCATTTAGCAAT
CCATTCTCTCAGGCGCTGACTTCAGTTTTCCATCCATTGACGGCCTCAAA
TGTATCTTGTATAATGATCATGTCATGTTCCAAATCGTGACAAATTCAGA
GTGCAAAAGGTTCCGCGGTGGAGAGCAAAGGTGGTTGGCTCAATATTCGG
TCTAAGCAAAATAGCGCAAATGCAAATGAAGCGACGGCAACGGACAGTAA
CGGAAGGGGTTGGGGACGGAGGGGAGGCAATGGAGGCAGTGGCGGTAGAG
ACGGTGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig145:2905..6912-

>mRNA_H-paniculata_contig145.2693.1 ID=mRNA_H-paniculata_contig145.2693.1|Name=mRNA_H-paniculata_contig145.2693.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1626bp|location=Sequence derived from alignment at H-paniculata_contig145:2905..6912- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGTAGGTATGCCGAGGAGCAAAGGTCATCCTGCTGTTGCTGTATTAACAA
AGTGTAGGTATGCCGAGGAGCAAAGGTCATCCTGCTGTTGCTGTATTAAC
AAAGGTTCAAGGTCGCCACTGACCATAGTCAATTCTATCCCCGAAGCGCC
TGCTGGCCTGGCGGGCACGCAAAGCATCGGACTATACCCATTTACCATGC
CCAGGTTCAAGGTCGCCACTGACCATAGTCAATTCTATCCCCGAAGCGCC
TGCTGGCCTGGCGGGCACGCAAAGCATCGGACTATACCCATTTACCATGC
CCAGCCGAGCTAGCATCACGCTGGCGGTGCTGGGCGTGGGCGTGGCGACG
ATCCTAACCACCGGGTTCACACTTTTGAGTCCACTTTCTCCGCATAAAAA
AGTCCGCGACGGTAGTCGATGCTTCCAAAGGTCGAGCGAGCAGTATAGCT
CTCTCAAGGTCACATCTGGATGCACGCATCATGAGCACCACTTCAAAGAA
GGCCGGCGATTGTGCCCTAATTTCAGAGTACTTTTGCCATCGCCACGACC
AGCCGCCTCCTGTGTTGGATCGATGCCATTTTGCTATGGCAATGGCAATG
CCTGGGAGACTACAAACGGAATTAAAGGTGGAGCGGAAAATTTAGTGGGA
ACGAGTTGGGGGGGCTGCAGGGCACTCGGCACCACGTCGGGTGCTACTGT
CAATGTCAGAACTAGTGCTCTCACGGTATCGGCGGCAGGAGGGCGCGCTG
CGGCTTGGCCGCCGGGGCGAGGTGGATCCAAGGTTTCGGCGAAGCCTGGA
TCTCAGCCGAGCTAGCATCACGCTGGCGGTGCTGGGCGTGGGCGTGGCGA
CGATCCTAACCACCGGGTTCACACTTTTGAGTCCACTTTCTCCGCATAAA
AAAGTCCGCGACGGTAGTCGATGCTTCCAAAGGTCGAGCGAGCAGTATAG
CTCTCTCAAGGTCACATCTGGATGCACGCATCATGAGCACCACTTCAAAG
AAGGCCGGCGATTGTGCCCTAATTTCAGAGTACTTTTGCCATCGCCACGA
CCAGCCGCCTCCTGTGTTGGATCGATGCCATTTTGCTATGGCAATGGCAA
TGCCTGGGAGACTACAAACGGAATTAAAGGTGGAGCGGAAAATTTAGTGG
GAACGAGTTGGGGGGGCTGCAGGGCACTCGGCACCACGTCGGGTGCTACT
GTCAATGTCAGAACTAGTGCTCTCACGGTATCGGCGGCAGGAGGGCGCGC
TGCGGCTTGGCCGCCGGGGCGAGGTGGATCCAAGGTTTCGGCGAAGCCTG
GATCTCAGAGTGCAAAAGGTTCCGCGGTGGAGAGCAAAGGTGGTTGGCTC
AATATTCGGTCTAAGCAAAATAGCGCAAATGCAAATGAAGCGACGGCAAC
GGACAGTAACGGAAGGGGTTGGGGACGGAGGGGAGGCAATGGAGGCAGTG
GCGGTAGAGACGGTGGAAGTGCAAAAGGTTCCGCGGTGGAGAGCAAAGGT
GGTTGGCTCAATATTCGGTCTAAGCAAAATAGCGCAAATGCAAATGAAGC
GACGGCAACGGACAGTAACGGAAGGGGTTGGGGACGGAGGGGAGGCAATG
GAGGCAGTGGCGGTAGAGACGGTGGA
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