mRNA_H-paniculata_contig14420.2656.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14420.2656.1
Unique NamemRNA_H-paniculata_contig14420.2656.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig14420.2656.1 vs. uniprot
Match: A0A6H5KWU3_9PHAE (RNB domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWU3_9PHAE)

HSP 1 Score: 163 bits (412), Expect = 5.160e-46
Identity = 76/96 (79.17%), Postives = 85/96 (88.54%), Query Frame = 1 
Query:    1 PPPDPDASIRTDLTHLKVYAVDSEDTMEVDDGISIERLPQGAGERIWIHIADVSRWVSERSAMYHEARRRRTTTYLPEGSVPMFPPEVAHGLLSLR 288
            PPPDP+ASIR DLTHLKVYA+DSEDT EVDDG+S+E LP GAGER+W+HIADVSRWV E S +Y EARRRRTT YLPEG+ PMFP EVAHG+LSLR
Sbjct:  408 PPPDPEASIRRDLTHLKVYAIDSEDTNEVDDGLSVEALPDGAGERVWVHIADVSRWVPEGSPLYEEARRRRTTIYLPEGAEPMFPAEVAHGVLSLR 503
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BLAST of mRNA_H-paniculata_contig14420.2656.1 vs. uniprot
Match: D8LLK7_ECTSI (COG0557: Exoribonuclease R n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLK7_ECTSI)

HSP 1 Score: 162 bits (409), Expect = 2.510e-44
Identity = 75/96 (78.12%), Postives = 85/96 (88.54%), Query Frame = 1 
Query:    1 PPPDPDASIRTDLTHLKVYAVDSEDTMEVDDGISIERLPQGAGERIWIHIADVSRWVSERSAMYHEARRRRTTTYLPEGSVPMFPPEVAHGLLSLR 288
            PPPDP+ASIR DLTHLKVYA+DSEDT EVDDG+S+E LP GAGER+W+HIADVSRWV E S +Y EARR+RTT YLPEG+ PMFP EVAHG+LSLR
Sbjct:  310 PPPDPEASIRRDLTHLKVYAIDSEDTNEVDDGLSVEALPDGAGERVWVHIADVSRWVPEGSPLYEEARRKRTTIYLPEGAEPMFPAEVAHGVLSLR 405
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BLAST of mRNA_H-paniculata_contig14420.2656.1 vs. uniprot
Match: K9RQP0_SYNP3 (Exoribonuclease R n=1 Tax=Synechococcus sp. (strain ATCC 27167 / PCC 6312) TaxID=195253 RepID=K9RQP0_SYNP3)

HSP 1 Score: 124 bits (311), Expect = 4.700e-31
Identity = 61/95 (64.21%), Postives = 70/95 (73.68%), Query Frame = 1 
Query:    1 PPPDPDASIRTDLTHLKVYAVDSEDTMEVDDGISIERLPQGAGERIWIHIADVSRWVSERSAMYHEARRRRTTTYLPEGSVPMFPPEVAHGLLSL 285
            PPPD DA IR DLTHLKVY +D E T E+DDGIS+E LP G  ER+WIHIAD SRW+     +  EARRR TT YLP G +PMFPPE+A G +SL
Sbjct:  259 PPPDLDAPIRQDLTHLKVYTIDDESTQEIDDGISLETLPNGQ-ERLWIHIADPSRWLLLGDGLEQEARRRATTVYLPTGMIPMFPPELATGPMSL 352
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BLAST of mRNA_H-paniculata_contig14420.2656.1 vs. uniprot
Match: A0A2J7ZFW7_9CHLO (RNB domain-containing protein (Fragment) n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J7ZFW7_9CHLO)

HSP 1 Score: 112 bits (280), Expect = 2.270e-29
Identity = 57/100 (57.00%), Postives = 68/100 (68.00%), Query Frame = 1 
Query:    1 PPPDPDASIRTDLTHLKVYAVDSEDTMEVDDGISIERLPQGAGE----RIWIHIADVSRWVSERSAMYHEARRRRTTTYLPEGSVPMFPPEVAHGLLSLR 288
            PPPDPDA+ R DLTHL V+ +D   T EVDDG+SIE LP G+G     RIWIH+AD +RW+S  S +    R+R  T YLP GS  MFPPE+A G  SLR
Sbjct:   77 PPPDPDAATRADLTHLPVFTIDDASTTEVDDGLSIEPLPGGSGSGGGFRIWIHVADPTRWISPGSGLDLFGRQRIRTLYLPWGSARMFPPELAEGPFSLR 176
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BLAST of mRNA_H-paniculata_contig14420.2656.1 vs. uniprot
Match: A0A8J7GB42_9CYAN (VacB/RNase II family 3'-5' exoribonuclease n=3 Tax=Pseudanabaenales TaxID=2881377 RepID=A0A8J7GB42_9CYAN)

HSP 1 Score: 118 bits (296), Expect = 5.330e-29
Identity = 61/96 (63.54%), Postives = 70/96 (72.92%), Query Frame = 1 
Query:    1 PPPDPDASIRTDLTHLKVYAVDSEDTMEVDDGISIERLPQGAGERIWIHIADVSRWVSERSAMYHEARRRRTTTYLPEGSVPMFPPEVAHGLLSLR 288
            PPPDPD   R DLTHLKVY VD E T E+DDG+SIE LP G  +R+WIHIAD +RW+S    +  EARRR TT YLP G VPMFPPE+A G +SL 
Sbjct:  265 PPPDPDCE-RLDLTHLKVYTVDDESTREIDDGLSIEFLPDGQ-QRLWIHIADPTRWLSPGDELDLEARRRCTTLYLPTGMVPMFPPELATGPMSLN 358
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BLAST of mRNA_H-paniculata_contig14420.2656.1 vs. uniprot
Match: A0A6H1TW57_9CYAN (VacB/RNase II family 3'-5' exoribonuclease n=4 Tax=Cyanobacteria TaxID=1117 RepID=A0A6H1TW57_9CYAN)

HSP 1 Score: 117 bits (294), Expect = 9.880e-29
Identity = 57/95 (60.00%), Postives = 69/95 (72.63%), Query Frame = 1 
Query:    1 PPPDPDASIRTDLTHLKVYAVDSEDTMEVDDGISIERLPQGAGERIWIHIADVSRWVSERSAMYHEARRRRTTTYLPEGSVPMFPPEVAHGLLSL 285
            PPPDPDA  R DLTHLKVY +D E T E+DDG+S+E L  G   R+W+HIAD +RW++    +  EARRR TT YLP G VPMFPPE+A G +SL
Sbjct:  257 PPPDPDADNRLDLTHLKVYTIDDESTEEIDDGLSVESLEDGR-RRLWVHIADPTRWLTPGDELDLEARRRCTTVYLPTGMVPMFPPELATGPMSL 350
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BLAST of mRNA_H-paniculata_contig14420.2656.1 vs. uniprot
Match: A0A1Y1IC52_KLENI (3'->5' mt/cp Exoribonuclease II n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IC52_KLENI)

HSP 1 Score: 117 bits (293), Expect = 1.480e-28
Identity = 54/95 (56.84%), Postives = 72/95 (75.79%), Query Frame = 1 
Query:    1 PPPDPDASIRTDLTHLKVYAVDSEDTMEVDDGISIERLPQGAGERIWIHIADVSRWVSERSAMYHEARRRRTTTYLPEGSVPMFPPEVAHGLLSL 285
            PPPDP + +R DL HLKVY +DS+DT+EVDDG+S+ERLP G  +R+W+H+AD +RW S    + +EAR R T+ YLP G+VPMFP  +A G +SL
Sbjct:  547 PPPDPLSDVRVDLRHLKVYMIDSDDTLEVDDGVSVERLPDGR-KRLWVHVADPTRWTSPGDVLDYEARLRATSAYLPTGAVPMFPMALAGGGMSL 640
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BLAST of mRNA_H-paniculata_contig14420.2656.1 vs. uniprot
Match: UPI001A02402F (VacB/RNase II family 3'-5' exoribonuclease n=1 Tax=Oscillatoriaceae cyanobacterium M7585_C2015_266 TaxID=2774341 RepID=UPI001A02402F)

HSP 1 Score: 115 bits (288), Expect = 6.470e-28
Identity = 58/96 (60.42%), Postives = 71/96 (73.96%), Query Frame = 1 
Query:    1 PPPDPDASIRTDLTHLKVYAVDSEDTMEVDDGISIERLPQGAGERIWIHIADVSRWVSERSAMYHEARRRRTTTYLPEGSVPMFPPEVAHGLLSLR 288
            PPPDPD++ R DLTHLKVY +D E T E+DDG+S+E L  G  +R+WIHIAD SRW++    +  EARRR TT YLP G VPMFP E+A G +SLR
Sbjct:  257 PPPDPDSN-RLDLTHLKVYTIDDESTQEIDDGLSLEYLEDGR-QRLWIHIADPSRWLTPGDELDMEARRRTTTLYLPTGIVPMFPTELATGPMSLR 350
[Close]
BLAST of mRNA_H-paniculata_contig14420.2656.1 vs. uniprot
Match: A0A2D2Q0K2_THELV (RNB domain-containing ribonuclease n=1 Tax=Synechococcus lividus PCC 6715 TaxID=1917166 RepID=A0A2D2Q0K2_THELV)

HSP 1 Score: 113 bits (283), Expect = 3.100e-27
Identity = 55/95 (57.89%), Postives = 68/95 (71.58%), Query Frame = 1 
Query:    1 PPPDPDASIRTDLTHLKVYAVDSEDTMEVDDGISIERLPQGAGERIWIHIADVSRWVSERSAMYHEARRRRTTTYLPEGSVPMFPPEVAHGLLSL 285
            PP D DA +R DLTHLKVY +D E T E+DDG+S+E +  G  +++WIHIAD SRWV     + HEARRR TT YLP G +PMFP E+A G +SL
Sbjct:  257 PPTDIDADLRRDLTHLKVYTIDDESTQEIDDGLSVEVV--GDRQKLWIHIADPSRWVMADDVLDHEARRRATTVYLPTGIIPMFPSELATGPMSL 349
[Close]
BLAST of mRNA_H-paniculata_contig14420.2656.1 vs. uniprot
Match: A0A8J4ATF3_9CHLO (RNB domain-containing protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4ATF3_9CHLO)

HSP 1 Score: 113 bits (283), Expect = 3.300e-27
Identity = 56/96 (58.33%), Postives = 66/96 (68.75%), Query Frame = 1 
Query:    1 PPPDPDASIRTDLTHLKVYAVDSEDTMEVDDGISIERLPQGAGERIWIHIADVSRWVSERSAMYHEARRRRTTTYLPEGSVPMFPPEVAHGLLSLR 288
            PP DPDAS R DLTHL V+ +D   T EVDDG+S+E LP GAG RIWIH+AD +RW+   S +    R R  T YLP GSVPMFP ++A G  SLR
Sbjct:  540 PPADPDASSREDLTHLTVFTIDDASTTEVDDGLSLEHLPGGAGIRIWIHVADPTRWIRPGSNLDVAGRERIRTLYLPWGSVPMFPRQLAEGPFSLR 635
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14420.2656.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KWU3_9PHAE5.160e-4679.17RNB domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LLK7_ECTSI2.510e-4478.13COG0557: Exoribonuclease R n=1 Tax=Ectocarpus sili... [more]
K9RQP0_SYNP34.700e-3164.21Exoribonuclease R n=1 Tax=Synechococcus sp. (strai... [more]
A0A2J7ZFW7_9CHLO2.270e-2957.00RNB domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A8J7GB42_9CYAN5.330e-2963.54VacB/RNase II family 3'-5' exoribonuclease n=3 Tax... [more]
A0A6H1TW57_9CYAN9.880e-2960.00VacB/RNase II family 3'-5' exoribonuclease n=4 Tax... [more]
A0A1Y1IC52_KLENI1.480e-2856.843'->5' mt/cp Exoribonuclease II n=1 Tax=Klebsormid... [more]
UPI001A02402F6.470e-2860.42VacB/RNase II family 3'-5' exoribonuclease n=1 Tax... [more]
A0A2D2Q0K2_THELV3.100e-2757.89RNB domain-containing ribonuclease n=1 Tax=Synecho... [more]
A0A8J4ATF3_9CHLO3.300e-2758.33RNB domain-containing protein n=1 Tax=Volvox afric... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14420contigH-paniculata_contig14420:3623..4808 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score163.3
Seed ortholog evalue5.6e-38
Seed eggNOG ortholog2880.D8LLK7
Hectar predicted targeting categoryother localisation
EggNOG free text desc.3'-5'-exoribonuclease activity
EggNOG OGsCOG0557@1,KOG2102@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size291
Cds size291
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929147.751511-CDS-H-paniculata_contig14420:3622..38291622929147.751511-CDS-H-paniculata_contig14420:3622..3829Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14420 3623..3829 -
1691480749.714172-CDS-H-paniculata_contig14420:3622..38291691480749.714172-CDS-H-paniculata_contig14420:3622..3829Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14420 3623..3829 -
1622929147.7662318-CDS-H-paniculata_contig14420:4724..48081622929147.7662318-CDS-H-paniculata_contig14420:4724..4808Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14420 4725..4808 -
1691480749.7257466-CDS-H-paniculata_contig14420:4724..48081691480749.7257466-CDS-H-paniculata_contig14420:4724..4808Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14420 4725..4808 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14420.2656.1prot_H-paniculata_contig14420.2656.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14420 3623..4808 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14420.2656.1

>prot_H-paniculata_contig14420.2656.1 ID=prot_H-paniculata_contig14420.2656.1|Name=mRNA_H-paniculata_contig14420.2656.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=97bp
PPPDPDASIRTDLTHLKVYAVDSEDTMEVDDGISIERLPQGAGERIWIHI
ADVSRWVSERSAMYHEARRRRTTTYLPEGSVPMFPPEVAHGLLSLR*
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mRNA from alignment at H-paniculata_contig14420:3623..4808-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14420.2656.1 ID=mRNA_H-paniculata_contig14420.2656.1|Name=mRNA_H-paniculata_contig14420.2656.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1186bp|location=Sequence derived from alignment at H-paniculata_contig14420:3623..4808- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCACCGCCGGACCCGGATGCGAGCATCCGTACAGACTTGACGCATCTCAA
GGTCTATGCAGTCGACAGTGAGGACACCATGGAGGTGGGGACATGCATGG
AAATGTTACATTTATTGTGTTCCGTGTGTTGCAACATGTCTGGGCAACTG
TCGTCGGCTGCCCCTCTCGAAGAGACACTACTTTACTACGCGCGCCGAAC
ACGCACGTCTAACCTGAAGTGCCGGGGTCCGTGCTCAAGGTGCTAGGTAA
TGACAGTTATTTCCGGGCAGTTGGATATATCGCTGTGGAATACGAGAAGG
ACATTAGTGAACATTGACAAATTGCCACGGTTTACTGTGCTGTGGTCACG
GGGGGTGACTATTGGTATCCATATCCTGGTATGCATAACCTTGCAACAAA
CCCCGTCGTCAACCCTTTCTCAACTTGAAATTTGAAAATATCATCACCCC
TCGGACAACAACGAATACTTTCAAATGGTTTTCACAAATAAATTCAAAAT
ATTTGCTTCGGTTTCAAAATGAGCGGACACATAGAATCTAAAATACCCCC
CCCCCCCTGTCCATTCGATTTACGAGTATTGTTAGCAGGCCGTGGATGGT
CCGGGGGCACATAGAGTACACGAGCTCATTCTGATTTTTTTTTGGCGAAT
GCTTTCAGTTAAAAAAAAAAAAAAATTGCAAGTATTCGTAGTTTGTCCGG
GGGGGGAGTGAAATCTTTTCCAAGTATACTTTTCAATTTTTTTAAACGTA
GATCAGGATTAGTAAAACCTTCATGAGCCACCCTGTGGCAAATTAGAAAC
GAGCGATTGGTCTTCCATAGGATTTCGCTCTCCTAGAAACAAGTGTCGGC
CTTCCTCGAATGCGTGGTCACTAATCGATGGTTTAACAAGTTAGCCATGC
ATGGAGCACACACATACATACACTTAAACATACACATACACACACAAACA
CACGCGCGCGCGCGCGCGCGCGCGCAAAGGTGGACGATGGTATCAGCATC
GAACGCTTACCTCAAGGGGCGGGGGAGAGGATATGGATCCACATCGCGGA
TGTATCGCGATGGGTGTCTGAGCGCAGCGCCATGTACCACGAGGCGCGGC
GACGAAGAACGACCACGTACCTTCCGGAAGGGTCCGTACCCATGTTTCCG
CCGGAGGTTGCACACGGACTCTTGTCGCTTCGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig14420:3623..4808-

>mRNA_H-paniculata_contig14420.2656.1 ID=mRNA_H-paniculata_contig14420.2656.1|Name=mRNA_H-paniculata_contig14420.2656.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=582bp|location=Sequence derived from alignment at H-paniculata_contig14420:3623..4808- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCACCGCCGGACCCGGATGCGAGCATCCGTACAGACTTGACGCATCTCAA
GGTCTATGCAGTCGACAGTGAGGACACCATGGAGCCACCGCCGGACCCGG
ATGCGAGCATCCGTACAGACTTGACGCATCTCAAGGTCTATGCAGTCGAC
AGTGAGGACACCATGGAGGTGGACGATGGTATCAGCATCGAACGCTTACC
TCAAGGGGCGGGGGAGAGGATATGGATCCACATCGCGGATGTATCGCGAT
GGGTGTCTGAGCGCAGCGCCATGTACCACGAGGCGCGGCGACGAAGAACG
ACCACGTACCTTCCGGAAGGGTCCGTACCCATGTTTCCGCCGGAGGTTGC
ACACGGACTCTTGTCGCTTCGGTGAGTGGACGATGGTATCAGCATCGAAC
GCTTACCTCAAGGGGCGGGGGAGAGGATATGGATCCACATCGCGGATGTA
TCGCGATGGGTGTCTGAGCGCAGCGCCATGTACCACGAGGCGCGGCGACG
AAGAACGACCACGTACCTTCCGGAAGGGTCCGTACCCATGTTTCCGCCGG
AGGTTGCACACGGACTCTTGTCGCTTCGGTGA
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