mRNA_H-paniculata_contig1442.2655.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1442.2655.1 vs. uniprot
Match: D8LTU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTU4_ECTSI) HSP 1 Score: 633 bits (1632), Expect = 6.590e-202 Identity = 467/1241 (37.63%), Postives = 622/1241 (50.12%), Query Frame = 1
Query: 1 PGAQQSTVQLVWESQGISGRAYQNDGNLAFYRKKKMAARRRLSHNPGIRAAIERGWWLYLPLQWIVLNDMEVLKVLSKQSYQTLLASVYTALVPTAGKVEAEEAACWDYVRDAQGQPEELTRIGITLGVFSDSLFALADNWTETVRAQDYMKFLGILWERVRPDLLFPPSDGNKTETAKRGFITNMYEKGRRRARGARSVNRTIRGGRGRACRGGRNSNGRITSTPWGAETAATKV---STQVSNL-------------------GVFGAHFHISLPQPPRQIPPPRTPRGMIICRAPWFQCKEAKVAAWAGIRHAAVMEDSRDAVGATDRSGGSGNKLRG-NEAECEGEDWAGRRKPRGRRVIFR-----------------TSILPGKERSVN-RAGRGGGHEGRQDRGVVDGSLLARESLWDFAARKFPMDTREEGDAFLLFAERINPSLFGTRDELETASPDGEVSPVSGAGEELSVNNSRKYTVSKRSKVKPLHSCVAGPNVPTRFSLPHIPFACYRTVQP-TIIRRYPTDAECWAKTRQKNVLTSVLEGIFTLWQRREE-YSPAEYGAYVLGLSERDSFLAYAISNGWGKRGGGVHPRHTMDDVLKCWRVGRGRCPEALVMWDLIEDLIWEEADEAVDDVYDAGIDMHTIPHPVLHDP------QLNNMSMVGKGAA---------------HQRRPQPQICSPQS-------HLEGESLMVQSVSNDLGICSRSGGSYGAGSAGRVLLQGEKTASSVRHGQAAFFQSACPKERGACLEITLQSEDSVGRAH-------TATPISLYAIQAATRPSRLSSYSWASRGKICHRLLLNWKGK----------------------------------HTADHNNRAMHSASHHH-PESPIHIAVVCPEPXXXX---APAFGDAVVGLRETNCRMNSV---RG-------------GGGNRAG--------KWERVRYIIGVRTVGPPRVVLEGSRWHSLPWRGGHFQDMEDDSDPPSVHVTLRLPTPLKVS-FAENSWPGYFSWRLFQGDIVGGDSSASFVDAQVLVTLQVRPS--DPTVRVDVFCDSSPRPAPSPTEHSWWMPAGGTEAIRQ----AISPRATLPQQVLTPSTAWVTGSTRGGVGLAPGAATEEGWTPLPERRAGETGGVGWSRMTVAMPRDHAGAFHVGVFGHGHK------GPARG-TIDIKVTRLIEDPLVLRDLDFCQNFRTR 3261
P + +QL WE QG+SGRAYQNDGN + YRKKKMAARRRLS + GIRAAIERGWW YLPL+W++LND VLK+L +Q Y L ++Y LVPTA + EA+E A W+Y DA+G P+EL R GITLG FS++LFA+ADNWTETVRA DY++FL +LWERVRPD+LF P K E+ + + KG A A + R RN R + P + ++ S + +N+ G G + PP ++PPP+TP G+ R P F+ KEA+ AAW + +++ R + A + G LRG + GE G ++ + T IL +R + R G GGG+ +++ V+ + ES+WDF R P+++RE DAF+LF ER P L + + + G ++ V + K + + P+ S P P T++RRY T W + R++ V + L + W+ +E +PAEYGA +G +R SFLAYAI+NGWG R GGVH + T+D V WR G GRCPE +W+++ DL+W+EA+ A+ + G+D+++IPH +LHDP ++ S + + +A HQ+R + +P S +GE + D G R GG G G AGRVLLQGE+ A SVR GQAAF+Q+ CP ERGACLEITL+S D RA T ISLYA+QA RP RLS Y+W SRGK HRLLLNWKG +T+ A S P +PIH+AVVCPE XXXX APAF + +G+ + + RG GG R + +RVR+ + VR VGPPRVVLEG RW+SLP+ G P + TLRLPTPL+ + + +S+P L G + + FVD++ LVTLQ R S DP VD++C +SPRP PSP +H+W MP GG A P A P Q AGE G G SRMTVAMPRDH GAFHVGVFG + G ARG TI+IKVTRLI+D VL+ L+F Q+F R
Sbjct: 217 PASVPPLLQLRWERQGVSGRAYQNDGNPSLYRKKKMAARRRLSKHKGIRAAIERGWWPYLPLRWVILNDQHVLKILPRQGYILLFTAMYMTLVPTADEAEAKETARWEYGEDAKGLPQELGRAGITLGAFSEALFAVADNWTETVRANDYIEFLCVLWERVRPDVLFRPPP-LKPESDDPPTAPSQH-KGNHAAAAANKIGR-------------RNQKARRKNRPKDGDDDYLRLHEMSRKAANVLGIGDERWRGGGXXXXXXXGREGEALDDNRRAPPTRLPPPQTPDGLQQLRIPGFRSKEAQRAAWVRHKQRRIVDPGRGVLLAPEGMDG----LRGIHRGGGRGETSGGAKENQXXXXXXXXXXXXXXXXXXXXXTRVTGILKEADRQRDVRTGGGGGYRPKEEEAEVEKEEM--ESIWDFITRNVPVNSRER-DAFILFVERKQPDLLDNNNNINNKNY--------GRNPDVGVGDQTKPALGR-----PISS--PSPKRPAAXXXXXXXXXXXXXXXXXTVVRRYRTQEATWERARRQTVPSRALGELLEAWRSGQEGMTPAEYGAAFIGPPKRASFLAYAIANGWGTRAGGVHSQQTLDGVAAEWRRGSGRCPEMDALWEVLRDLLWDEAEGAIGEALSDGVDLYSIPHRLLHDPPRGRQGHRSSSSSIRRNSARPVLLSPRQRGDYDHHQQRHRRASTAPASTDGAAAAEFDGEGV----GGGDNGF-DRHGG--GEGPAGRVLLQGERVAGSVRQGQAAFYQTPCPTERGACLEITLESHDDGSRAPGRSNDNGIPTAISLYAVQAPHRPLRLSFYTWVSRGKTHHRLLLNWKGPAAGLKGGDEGTLSPAPSPPRTGAVISSPWDGVRGYTSPRPATASASKPWKPVPPAPIHMAVVCPEXXXXXXXLAPAFDGSGIGILAATAQADETLDDRGIFGGVLQEPGRVEGGATRGSVGGQVATPRRKRVRFTVRVRVVGPPRVVLEG-RWYSLPF-GTDTGGGTTGPHPLAAFATLRLPTPLRATRWGPDSYPEDPFGDLDVSVFAGEEDRSGFVDSETLVTLQARHSTCDPDA-VDIYCGTSPRPRPSPADHTWRMPIGGXXXXXXSGVAARVPGAPAPSQXXXXXXXXXXXXXXXXXXXX---XXXXXXXXNHHGAAGEVAGAGVSRMTVAMPRDHTGAFHVGVFGRERRKTTTGGGTARGGTINIKVTRLIDDQFVLKQLEFAQDFHRR 1407
BLAST of mRNA_H-paniculata_contig1442.2655.1 vs. uniprot
Match: A0A6H5K4Z7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4Z7_9PHAE) HSP 1 Score: 396 bits (1018), Expect = 9.240e-116 Identity = 344/1074 (32.03%), Postives = 467/1074 (43.48%), Query Frame = 1
Query: 19 TVQLVWESQGISGRAYQNDGNLAFYRKKKMAARRRLSHNPGIRAAIERGWWLYLPLQWIVLNDMEVLKVLSKQSYQTLLASVYTALVPTAGKVEAEEAACWDYVRDAQGQPEELTRIGITLGVFSDSLFALADNWTETVRAQDYMKFLGILWERVRPDLLF------PPSDG---------NKTETAKRGFITNMYEKGRRRARGARSVNRTIRGGRGRACRGGRNSNGRI-TSTPWGAETAATKVSTQVSNLGVF------GAHFHISLPQPPRQIPPPRTPRGMIICRAPWFQCKEAKVAAWAGIRHAAVMEDSR---------DAVGATDRSGGSGNK-----LRGNEAECEGEDWAGRRKPRGRRVIFRTSILPGKERSVN-RAGRGGGHEGRQDRGVVDGSLLARESLWDFAARKFPMDTREEGDAFLLFAERINPSLFGTRDELETASPDGEVSPVSGAGEELSVNNSRKYTVSKRSKVKPLHSCVAGPNVPTRFSLPHIPFACYRTVQPTIIRRYPTDAECWAKTRQKNVLTSVLEGIFTLWQRREE-YSPAEYGAYVLG-LSERDSFLA---------YAISNGWGKRGGGVHPRHTMDDVLKCWRVGRGRCPEALVMWDLIEDLIWEEADEAVDDVYDAGIDMHTIPHPVLHDP---------QLNNMSMVGKGAAHQRRPQPQICSPQSHLEGESLMVQSVSNDLGICS----------------RSGGSYGAGSAGRVLLQGEKTASSVRHGQAAFFQSACPKERGACLEITLQSEDSVGRAH-------TATPISLYAIQAATRPSRLSSYSWASRGKICHRLLLNWKGKHTA------------------------------DHNNRAMHSASHHHPESPIHIAVVCPEPXXXX--------APAFGDAVVGL------RETNCRMNSVRGG-----------------GGNRAGKWERVRYIIGVRTVGPPRVVLEGSRWHSLPWRGGHFQDMEDDSDPPSVHVTLRLPTPLKVS-FAENSWP----GYFSWRLFQGDIVGGDSSASFVDAQVLVTLQVR 2802
++QL WE QG+SGR YQNDGN + YRKK Y L ++Y LVPTA + EA+E A W+Y DA+G P++L R GITLG FS++LFA+ADNWTETVR++DY++FL +LWERVRPD+LF P SD I +K RR+ G G + N R+ +P A G PP ++PPP+TP G+ R P F+ KEA+ AAW + +++ R D R GG G GRR T IL +R + R G GGG+ +++ V+ + ES+WDF R DAF+LF ER P L + + + G S V GAG++ + R S S +P A +RRY T W + R++ V L + W+ +E +PAEYGA +G L RD A YAI+NGWG R GG H + T+D V WR GRGRCPE +W+++ DL+W+EA++A+D+ G+D+++IPH +LHDP +++ + + + P P+ H + + ++ G + R GG G G GRVLLQGE+ A SVR GQAAF+Q+ CP ERGACLEITL+S D+ RA T ISLYA+QA RP RLS Y+W SRGK HRLLLNWKG + + +AS P P+ A XXXX APAF + +G+ + + GG G A +RVR+ + VR VGPPRVVLEG RW+SLP+ + M P + TLRLPTPLK + + +S+P G +F G+ + FVD+ LVTLQVR
Sbjct: 217 SLQLRWERQGVSGRTYQNDGNPSLYRKK---------------------------------------------GYMLLFTAMYMTLVPTADEAEAKETARWEYGEDAKGLPQDLGRAGITLGAFSNALFAVADNWTETVRSKDYIEFLCLLWERVRPDVLFRPLPLKPESDDPPXXXXXXXXXXXXXXXXXIGRRNQKARRKNWG----------------NDGDDDNSRLHEKSPKAANVLGIGDERWRGGXXXXXXXXREGEALDDDRRAPPTRLPPPQTPDGLQQLRIPGFRPKEAQRAAWVRYKQRRIVDPGRGILLTPEGMDGARGIHRGGGKGENSGXXXXXXXXXXXXXXXXXXXXXXMGRRRTRVTGILKEADRQRDVRTGGGGGYRPKEEE--VEVEMEKMESIWDFITRX---------DAFILFVERKRPDLLDNNNNINNKNY-GRNSDV-GAGDQTKLALGRPN--SSPSPKRP-----AAXXXXXXXXXXXXXXXXXXXXXXXXVRRYRTQEATWERARRQTVPARALGELLEAWRSGQEGMTPAEYGAAFIGPLQARDRGAAAWLMRGRVSYAIANGWGTRAGGCHSQQTLDGVAAEWRRGRGRCPEMDALWEVLRDLLWDEAEDAIDEALSDGVDLYSIPHRLLHDPPRGRQGHRSSSSSIRSIRRSSTRPVLPSPRQRGDYDHQQRHRRASTAPASTDGAAAVEFDGGGVDGGDNGFDRHGG--GKGPEGRVLLQGERVAGSVRQGQAAFYQTPCPTERGACLEITLESHDTGSRARGRSNDNGIPTAISLYAVQAPHRPLRLSFYTWVSRGKTHHRLLLNWKGPAAGLKGGDEGTLSPAPSPPRTGKLISSPWDGVRGYTSPRPATASASKPWKPVPPAXXXXXXXXXXXXXXXXXLAPAFDGSGIGILAAPDQADETLDDRGIFGGDLQEPARVVDGATTGSVGRQVAPTRKRVRFTVRVRVVGPPRVVLEG-RWYSLPFGTDTGEGMTGPH-PLATFATLRLPTPLKATRWGPDSYPADPFGDRDVSVFSGE----EDRPGFVDSATLVTLQVR 1201 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1442.2655.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1442.2655.1 >prot_H-paniculata_contig1442.2655.1 ID=prot_H-paniculata_contig1442.2655.1|Name=mRNA_H-paniculata_contig1442.2655.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1087bp PGAQQSTVQLVWESQGISGRAYQNDGNLAFYRKKKMAARRRLSHNPGIRAback to top mRNA from alignment at H-paniculata_contig1442:6720..22503- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1442.2655.1 ID=mRNA_H-paniculata_contig1442.2655.1|Name=mRNA_H-paniculata_contig1442.2655.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=15784bp|location=Sequence derived from alignment at H-paniculata_contig1442:6720..22503- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1442:6720..22503- >mRNA_H-paniculata_contig1442.2655.1 ID=mRNA_H-paniculata_contig1442.2655.1|Name=mRNA_H-paniculata_contig1442.2655.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=6522bp|location=Sequence derived from alignment at H-paniculata_contig1442:6720..22503- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |