mRNA_H-paniculata_contig14418.2654.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14418.2654.1
Unique NamemRNA_H-paniculata_contig14418.2654.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig14418.2654.1 vs. uniprot
Match: D7FZ64_ECTSI (Long chain acyl-CoA synthetase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ64_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 1.130e-16
Identity = 39/43 (90.70%), Postives = 41/43 (95.35%), Query Frame = 1 
Query:   25 QDCVSVFSENSARWLIAEQGIMKAGGCNAVRGATAPVSELRSV 153
            QDCVSVFSENS RWLIAEQGIMKAGGCNAVRGATAPV+ELR +
Sbjct:  116 QDCVSVFSENSYRWLIAEQGIMKAGGCNAVRGATAPVAELRYI 158
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BLAST of mRNA_H-paniculata_contig14418.2654.1 vs. uniprot
Match: A0A7S2Y1P6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1P6_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 3.410e-14
Identity = 33/42 (78.57%), Postives = 37/42 (88.10%), Query Frame = 1 
Query:   28 DCVSVFSENSARWLIAEQGIMKAGGCNAVRGATAPVSELRSV 153
            DCVS+FSENS RWL+ EQ IMKAGGCNAVRGATAPV EL+ +
Sbjct:  138 DCVSMFSENSHRWLVLEQAIMKAGGCNAVRGATAPVGELQYI 179
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BLAST of mRNA_H-paniculata_contig14418.2654.1 vs. uniprot
Match: A0A836C922_9STRA (Long-chain acyl-CoA synthetase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C922_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 3.360e-12
Identity = 34/51 (66.67%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:    1 FNPFFVAAQDCVSVFSENSARWLIAEQGIMKAGGCNAVRGATAPVSELRSV 153
            F    +A   CVSVFSENS RWL AEQGIM AGGCNAVRG  APV EL+ +
Sbjct:  133 FQALGLAPGQCVSVFSENSNRWLTAEQGIMLAGGCNAVRGVAAPVEELQYI 183
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BLAST of mRNA_H-paniculata_contig14418.2654.1 vs. uniprot
Match: A0A326QJG7_9CYAN (Long-chain fatty acid--CoA ligase n=2 Tax=Synechococcales TaxID=1890424 RepID=A0A326QJG7_9CYAN)

HSP 1 Score: 65.5 bits (158), Expect = 4.090e-11
Identity = 31/47 (65.96%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:   16 VAAQDCVSVFSENSARWLIAEQGIMKAGGCNAVRGATAPVSELRSVL 156
            VAA D V++F+ENS RWLIA+QG+M+AG  +AVRG+TAPV ELR +L
Sbjct:   80 VAAGDVVALFAENSPRWLIADQGLMRAGAADAVRGSTAPVEELRYIL 126
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BLAST of mRNA_H-paniculata_contig14418.2654.1 vs. uniprot
Match: Q7V8V8_PROMM (Putative long-chain-fatty-acid--CoA ligase n=15 Tax=Prochlorococcus TaxID=1218 RepID=Q7V8V8_PROMM)

HSP 1 Score: 63.9 bits (154), Expect = 1.430e-10
Identity = 30/52 (57.69%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:    1 FNPFFVAAQDCVSVFSENSARWLIAEQGIMKAGGCNAVRGATAPVSELRSVL 156
            F+   + A D V+ F+ENS RWLIA+QG+M+ G  NAVRGATAP+ ELR +L
Sbjct:   91 FSHLGIGAGDVVAFFAENSPRWLIADQGLMRTGAANAVRGATAPLEELRYIL 142
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BLAST of mRNA_H-paniculata_contig14418.2654.1 vs. uniprot
Match: W7TIG2_9STRA (Long-chain acyl-synthetase (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIG2_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 1.800e-10
Identity = 29/41 (70.73%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:   31 CVSVFSENSARWLIAEQGIMKAGGCNAVRGATAPVSELRSV 153
            CVSVF+ENS RWLIA+Q I+KAG CNAVRG  APV EL+ +
Sbjct:  178 CVSVFAENSHRWLIADQAILKAGACNAVRGVKAPVDELQYI 218
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BLAST of mRNA_H-paniculata_contig14418.2654.1 vs. uniprot
Match: A0A7G8ETQ5_9SYNE (Long-chain acyl-CoA synthetase n=4 Tax=unclassified Synechococcus TaxID=2626047 RepID=A0A7G8ETQ5_9SYNE)

HSP 1 Score: 63.2 bits (152), Expect = 2.670e-10
Identity = 29/45 (64.44%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:   22 AQDCVSVFSENSARWLIAEQGIMKAGGCNAVRGATAPVSELRSVL 156
            A D V +F+ENS RWL+A+QG+M+AGG +AVRGA APV ELR +L
Sbjct:   82 AGDVVGLFAENSPRWLVADQGVMRAGGVDAVRGAAAPVEELRYIL 126
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BLAST of mRNA_H-paniculata_contig14418.2654.1 vs. uniprot
Match: UPI0016801B96 (AMP-binding protein n=3 Tax=Synechococcales TaxID=1890424 RepID=UPI0016801B96)

HSP 1 Score: 63.2 bits (152), Expect = 2.670e-10
Identity = 30/47 (63.83%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:   16 VAAQDCVSVFSENSARWLIAEQGIMKAGGCNAVRGATAPVSELRSVL 156
            VAA D V++F+ENS RWL A+QG+M+AGG +AVRG+ APV ELR +L
Sbjct:   96 VAAGDVVALFAENSPRWLQADQGLMRAGGADAVRGSAAPVEELRYIL 142
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BLAST of mRNA_H-paniculata_contig14418.2654.1 vs. uniprot
Match: A0A4D9CQD3_9STRA (AMP-binding domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CQD3_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 2.670e-10
Identity = 29/41 (70.73%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:   31 CVSVFSENSARWLIAEQGIMKAGGCNAVRGATAPVSELRSV 153
            CVSVF+ENS RWLIA+Q I+KAG CNAVRG  APV EL+ +
Sbjct:  178 CVSVFAENSHRWLIADQAILKAGACNAVRGVKAPVDELQYI 218
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BLAST of mRNA_H-paniculata_contig14418.2654.1 vs. uniprot
Match: A0A1J0PC20_9SYNE (Long-chain fatty acid--CoA ligase n=2 Tax=unclassified Synechococcus TaxID=2626047 RepID=A0A1J0PC20_9SYNE)

HSP 1 Score: 62.8 bits (151), Expect = 3.640e-10
Identity = 28/47 (59.57%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:   16 VAAQDCVSVFSENSARWLIAEQGIMKAGGCNAVRGATAPVSELRSVL 156
            V A D V++F+ENS RWL+A+QG+M+AG  +AVRG+TAP+ ELR +L
Sbjct:   80 VRAGDVVALFAENSPRWLVADQGLMRAGAADAVRGSTAPIDELRYIL 126
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14418.2654.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZ64_ECTSI1.130e-1690.70Long chain acyl-CoA synthetase n=1 Tax=Ectocarpus ... [more]
A0A7S2Y1P6_9STRA3.410e-1478.57Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A836C922_9STRA3.360e-1266.67Long-chain acyl-CoA synthetase n=1 Tax=Tribonema m... [more]
A0A326QJG7_9CYAN4.090e-1165.96Long-chain fatty acid--CoA ligase n=2 Tax=Synechoc... [more]
Q7V8V8_PROMM1.430e-1057.69Putative long-chain-fatty-acid--CoA ligase n=15 Ta... [more]
W7TIG2_9STRA1.800e-1070.73Long-chain acyl-synthetase (Fragment) n=1 Tax=Nann... [more]
A0A7G8ETQ5_9SYNE2.670e-1064.44Long-chain acyl-CoA synthetase n=4 Tax=unclassifie... [more]
UPI0016801B962.670e-1063.83AMP-binding protein n=3 Tax=Synechococcales TaxID=... [more]
A0A4D9CQD3_9STRA2.670e-1070.73AMP-binding domain-containing protein n=2 Tax=Mono... [more]
A0A1J0PC20_9SYNE3.640e-1059.57Long-chain fatty acid--CoA ligase n=2 Tax=unclassi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14418contigH-paniculata_contig14418:5973..6128 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.4
Seed ortholog evalue6.8e-14
Seed eggNOG ortholog2880.D7FZ64
Preferred nameAAE15
KEGG rclassRC00004,RC00014
KEGG koko:K01897
KEGG TC4.C.1.1
KEGG ReactionR01280
KEGG Pathwayko00061,ko00071,ko01100,ko01212,ko02024,ko03320,ko04146,ko04216,ko04714,ko04920,map00061,map00071,map01100,map01212,map02024,map03320,map04146,map04216,map04714,map04920
KEGG ModuleM00086
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0008922,GO:0009058,GO:0009507,GO:0009526,GO:0009536,GO:0009941,GO:0009987,GO:0015645,GO:0016053,GO:0016874,GO:0016877,GO:0016878,GO:0019752,GO:0030497,GO:0031967,GO:0031975,GO:0032787,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0071704,GO:0072330,GO:1901576
EggNOG free text desc.decanoate-CoA ligase activity
EggNOG OGsCOG1022@1,KOG1256@2759
Ec32 ortholog descriptionlong chain acyl-CoA synthetase
Ec32 orthologEc-02_006430.1
EC6.2.1.3
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01004,ko04147
Exons1
Model size156
Cds size156
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929147.3740318-CDS-H-paniculata_contig14418:5972..61281622929147.3740318-CDS-H-paniculata_contig14418:5972..6128Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14418 5973..6128 -
1691480749.4588773-CDS-H-paniculata_contig14418:5972..61281691480749.4588773-CDS-H-paniculata_contig14418:5972..6128Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14418 5973..6128 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14418.2654.1prot_H-paniculata_contig14418.2654.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14418 5973..6128 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14418.2654.1

>prot_H-paniculata_contig14418.2654.1 ID=prot_H-paniculata_contig14418.2654.1|Name=mRNA_H-paniculata_contig14418.2654.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=52bp
FNPFFVAAQDCVSVFSENSARWLIAEQGIMKAGGCNAVRGATAPVSELRS
VL
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mRNA from alignment at H-paniculata_contig14418:5973..6128-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14418.2654.1 ID=mRNA_H-paniculata_contig14418.2654.1|Name=mRNA_H-paniculata_contig14418.2654.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=156bp|location=Sequence derived from alignment at H-paniculata_contig14418:5973..6128- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCAACCCCTTCTTCGTTGCTGCACAGGACTGCGTCTCGGTGTTTTCGGA
GAACAGTGCTCGGTGGCTTATCGCGGAGCAGGGGATTATGAAGGCTGGGG
GCTGTAACGCAGTAAGGGGCGCCACAGCTCCAGTGTCTGAGCTAAGGTCA
GTCCTT
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Coding sequence (CDS) from alignment at H-paniculata_contig14418:5973..6128-

>mRNA_H-paniculata_contig14418.2654.1 ID=mRNA_H-paniculata_contig14418.2654.1|Name=mRNA_H-paniculata_contig14418.2654.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=312bp|location=Sequence derived from alignment at H-paniculata_contig14418:5973..6128- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCAACCCCTTCTTCGTTGCTGCACAGGACTGCGTCTCGGTGTTTTCGGA
GAACAGTGCTCGGTGGCTTATCGCGGAGCAGGGGATTATGAAGGCTGGGG
GCTGTAACGCAGTAAGGGGCGCCACAGCTCCAGTGTCTGAGCTAAGGTCA
GTCCTTTTCAACCCCTTCTTCGTTGCTGCACAGGACTGCGTCTCGGTGTT
TTCGGAGAACAGTGCTCGGTGGCTTATCGCGGAGCAGGGGATTATGAAGG
CTGGGGGCTGTAACGCAGTAAGGGGCGCCACAGCTCCAGTGTCTGAGCTA
AGGTCAGTCCTT
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