mRNA_H-paniculata_contig1441.2653.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1441.2653.1
Unique NamemRNA_H-paniculata_contig1441.2653.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig1441.2653.1 vs. uniprot
Match: A0A6H5LBM3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBM3_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 8.130e-7
Identity = 23/34 (67.65%), Postives = 26/34 (76.47%), Query Frame = 2 
Query:  368 RKCLHEGCSKQPSYGLAGTRTAEFCARHAKDGMV 469
            R+C HE C K P+YG+ GTR AEFCA HA DGMV
Sbjct:   15 RRCAHEDCVKHPTYGVPGTRKAEFCAPHALDGMV 48
[Close]
BLAST of mRNA_H-paniculata_contig1441.2653.1 vs. uniprot
Match: A0A6H5KW50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW50_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 5.720e-6
Identity = 24/37 (64.86%), Postives = 30/37 (81.08%), Query Frame = 2 
Query:  374 CLHEGCSKQPSYGLAGTRTAEFCARHAKDGMVDVVSK 484
            C   GCSK  S+G+ GTRTAE+CA HAKDGM++V+SK
Sbjct:    4 CKQHGCSKVGSFGVQGTRTAEYCATHAKDGMLNVISK 40
[Close]
BLAST of mRNA_H-paniculata_contig1441.2653.1 vs. uniprot
Match: D7FIE1_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIE1_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 1.360e-5
Identity = 25/42 (59.52%), Postives = 32/42 (76.19%), Query Frame = 2 
Query:  362 QWRKCLHE-GCSKQPSYGLAGTRTAEFCARHAKDGMVDVVSK 484
            QWR C  E GC+K PSYG AG++  EFCA+HAK GMV++ S+
Sbjct:  104 QWRPCCKEHGCTKWPSYGGAGSKKVEFCAQHAKKGMVNLRSR 145
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1441.2653.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5LBM3_9PHAE8.130e-767.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KW50_9PHAE5.720e-664.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIE1_ECTSI1.360e-559.52EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1441contigH-paniculata_contig1441:6859..15012 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size853
Cds size501
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1441.2653.1prot_H-paniculata_contig1441.2653.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1441 6859..7359 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929147.2641275-CDS-H-paniculata_contig1441:6858..73591622929147.2641275-CDS-H-paniculata_contig1441:6858..7359Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1441 6859..7359 -
1691480749.4275086-CDS-H-paniculata_contig1441:6858..73591691480749.4275086-CDS-H-paniculata_contig1441:6858..7359Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1441 6859..7359 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929147.2813606-UTR-H-paniculata_contig1441:7359..75871622929147.2813606-UTR-H-paniculata_contig1441:7359..7587Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1441 7360..7587 -
1691480749.4376748-UTR-H-paniculata_contig1441:7359..75871691480749.4376748-UTR-H-paniculata_contig1441:7359..7587Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1441 7360..7587 -
1622929147.3055606-UTR-H-paniculata_contig1441:14888..150121622929147.3055606-UTR-H-paniculata_contig1441:14888..15012Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1441 14889..15012 -
1691480749.4472127-UTR-H-paniculata_contig1441:14888..150121691480749.4472127-UTR-H-paniculata_contig1441:14888..15012Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1441 14889..15012 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1441.2653.1

>prot_H-paniculata_contig1441.2653.1 ID=prot_H-paniculata_contig1441.2653.1|Name=mRNA_H-paniculata_contig1441.2653.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=167bp
MSGQWRKCLHEGCSKQPSYGLAGTRTAEFCARHAKDGMVDVVSKHCSYEG
CSKQPSYGFWGSRKAEFCVQHAADEMVDVLSKKCCREGCLTRPTYGLRGT
RKAEFCVQHAEEGMMDVLSKSCSHEGCSKQPSYGLRGSRKAEFCVQHAGD
WMVNVVRKRCAHEGCSK
back to top

mRNA from alignment at H-paniculata_contig1441:6859..15012-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1441.2653.1 ID=mRNA_H-paniculata_contig1441.2653.1|Name=mRNA_H-paniculata_contig1441.2653.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=8154bp|location=Sequence derived from alignment at H-paniculata_contig1441:6859..15012- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTCACCAACACTTATTCCGTCCCTGACATTTCTCTGGCGTAGCTAAGCG
GCTCGAGTTATTCTGGTATATGGCTGGTGGATAGGAGCGGACAAGAGCAT
AATACTAGCAGGCCTTACATCGAGGTATGACAGCAGAGACGGGGACTTAT
ACGTAGTCTCTGCAGCACATACAATAGCAGTAGACTGAACAAATTGACTC
GTTCAACTACTGTATGTACTGACCCTACAGAGGTGATGCGCGCTGGCCAT
GCCCGATACCCCCACATGGTCAAGATATCACAAAGAATAGGCTAGAAGTG
ATGGGATGTTTCCGTTCTCGATAAGGTGAAAACATCACTTGCCTTGATTG
AAGATGTGCACACTAGCCAAGAGAGTCAACACTTTTAGCACGATTTATTG
TCTCAGAACAGAAATAAATCTGCCCAACTGCTGTTCTGACTGTAGACTGT
CTGATCTCCCGTTATCCCCGTGTTATCCTTCGGTATTTTACAGCAGTTGC
CCTCGAAGTTGGATACGACGACTGGCTCTAGTCAATCAGAGGGTGTTCAA
TCTTGGATATGGCACGTGCTGTGGGTGCCCTGTTACTCTTGACGCGAGAG
GTCTATCAAGAATTGTCCCTGTTTGGGTGTCATTCGTCATCCGTTCGACC
CCTGAGAAATGAAGCACGCCCACATACACGAAAGCTTTATCAGGAAAATC
CATGATATTTAGTCCCTCGAGGTTTCTACCGATGTAAGACGTAGACGTGT
CACAAATCCTACAGTATTGACTTGAAGCCAAAGGCAAACACACAGACAGT
AATGTAGCATATTTCAATGAAACGAGCCTTAGTTTCTGAGAAAAACGGAT
AATGGAGCGTTTGCGCAAAAGGCATTCTTTCCAAATATTTTGATACGTAA
AAGCAGAAACTCCGTCCATTCGAAATACGAATTTCTGTCAAATACAGATG
CTGAAATATTTTTGCCCCAATCAGATTATTTGATCATGATTTGATTGTAC
AAACATCGGGGTACCCCAACCTTACGACTGGATCCCCACTAGATTGTCGT
GGGTATCCGGGCATCAGGCAATGCCAGGGGCCTTGGAAACATGCACGAGG
CAAAACACATCTTGCGCTATCATCATAGAGATCTCGGGGACCACAATAGA
TATTAGCGGCGGACCAGCAGCTTCATCTCCAGTGTCAGGAACGGGAACTT
CCAGCACGGCGGGCGGCAGTATTGCCTCGCTGGATATAGCGAGCGCCTCC
ATTTCTCCCATTGAGGTCGACTCGCCTGCACCCCCGACCGCACACCAGTC
GATCCCGTGTCAGCCGCCACAGTGGGCTTGACAACCTCAACCAGACACAC
CGCGAGGAAGAGGGGCTACATCAAGTGGGATAGTGCCATAAACATCGCTA
GCGCACACCGCAAAAACAGTCGAATTCGCACACTCTCCCAAGCACACAGC
GCCCCCCGGCGCCGACTGATCTGTAGTTGTTATTGCGTCGACTCAAGCTA
GTCATTCTCGCGTGTCGTCGTCCGCTACCCAGATGATGTATCTAGACCGT
GCGATGTTGTGTGCTGGTTTGAATCAATTGGTCTACAGTCTACAGGCAGT
ATACTGCGGTGGTCATCCGCCAAGCATCGAATTTCTCGGGTCGTGTTGGC
CAACCACGATGTATTTCAAACATTATCCGTAGAGGGCTTCACTTTCGATT
TCAAATCTCGGTTTGGCGATAACTATTCTGGAGACCTCAGTCAACAATGC
TGACAAGAACTGAAGAAAGGGCATTCCGTTGGCAACGAGAGAATAAACTA
TAGACGAGTGAAATAGTGTTTTTGTTTGCGCAAACAGTAATAACGCGTGT
ACATTCAAGATTTTTTACCGCTGATACGGCATCACTTGGTGGCGCGATAT
CCAAGGCCAATGCACCGACCGACCGTGAGGAATAAATATGTGGATTATGT
TAGCTGTCTGTGTGTTCCAACAGCGGGCAGACATGGAGAAGATGGCGTGC
TGTAAACTGTCGAGGATCGAAATAACTAGTGGGAACTTGGTAGTATGTAG
TGATGTTTCTAGTCGCTAATAGTACCCAAATAAAAACCTGTGCTGTCCAA
CGCAGAATCCATAAATATACATCAGCACCACAAGAAGCAATCATATAGCA
ATCAGTACGCGCAGAATGGACCCAACATGAACAACATGTAACGTGAAAAA
ACTTGCCACAAGAAAATGCAGACAGCTGTGGATGAGTCCCGAGAAACTAC
AGACAGAAGCAACGGAATCCCGACAACTGTCATACGGTCAAAATCGTTGT
AACAGCCCGTGAGGACGGCGGCACATTGGGACAATCCTCAGTTCGAGCCA
TACGAGGTTCATATCCTCAATTAAGAACGGTGTGATAATGAACTGGGGTA
GAGTCTACTATCCAGATTGGAATGACGCGGCTGTATGAATGAAATCAGGT
TGCAGGGTTCGGGCAGGCTCGGGTACATACACTATACACTGAATCCATGT
GAAAATATCTTTGTAATTGTTGACGATCAACTGGGCTAGACTGTACTGCG
AAAAAGAGTGCGCAGCACACAGCGCATCGCACGAAGAATTCAAAAATCAG
CAAGCTGGGAAGACACGTTGACTACAGTTCAGACAAACGTAGAGTTGTGA
CAACGGAGGGCGCGCGCAGGCACATTGAAACACGAGAAACATCACACAGG
GCACACCGTCAACGCCTATATAGCAAATTACCGCCCATCACATAGGATGC
GCGTCAGACAGCCTACCCGGCAAACGATCGCGAGACAGACAAAAATAGAA
ACATATCAAGAGCAAAGCAAAACAGAGAGAAAAATGAAATCTACGAAAAA
TATCCCTCTCACAGCCACCCAGGAAATTAGGAAATAGTGCTCTCACGTCG
GCCGGCAAAATGAGATTGAGGAATTTCGCGAAAAACGTAATTGTGAAAGC
TTTTGCTAATGCCACACACCAGGACGGGGGTACGATTTTCGACCTGCTTG
TTTCGAATCTTACGGATTGCAAGCAGGGGTCATGCAAAATTGTCGTTAAT
AGTACAGAATGCAGGAGAACGTACAACTTCCCCATTTCGATAGCGATCGT
AGTATCTCGAAATTAAAGATAACCTGTGGCTTACACACTTCCTGATCATC
CTCCAAAATCATTTCTTCAGTTTCCTAGCTTTTCTTGACTAAGATTCATG
AATTAGCGGGTGAAGGTTTGCACCGAGTTTTTAGATAGCAATACAAGGAA
GGTGATGTTTCCCTTTTCAACGTCGATCGTCGTTCTCAAGAACTCCTTGT
AATACGGGCACTGAAGTATGGCCTATTTGGGTCGAACTCCGTTTTTACCG
GATTGCTGGAGATGTACTGCCGTTAGAGGAATAGCATTTATTATCCGTAT
TGGAATTTGCAGCAGCTTTGCAATTTTCAGGGTCTAACTCGTGAAATTCA
GCTCAAAATCGTGTTTTTCAAGGTTCTTTGGTTTCCAGCTCACAAACGAC
GGCTGCGTAGGTAGATCATGTAAGGTTTGAGCTGAATTTTACGAATTAGA
AGCTTCAATTTCACACAGATGTGTATACCAACACGAAGAAAAAGTGACAT
TTTCCCCTCTTCAAGGTCGGTCGTATAGTTCTCGAGGAATTTACGAAGAA
CGATTTGTGTTTCTTTTTTTATCGAGTTGTATCATTAATCAGTCCAATCC
CGTTTTGGTCACAGAGTTGATTTGTGTACAATCTACGTGCCATACTCCAG
GATCGAATTTTCATATTCCAAGGTTTCCGAGCTAAATATTACGAAATAGA
AGGTGCAATTTTTCACGCGCTTTTTAGAAAGCAATGAAAAATAACGTTTT
ATCCCCTTTTCATCTCGTTCTTGGACGTCAAAAACTCTGGCTGAATCGAG
CGCTGAAGTATGCCCTGTATGAGCCCGAGTCGGGCTACGGTAATGGGGGG
GCGGTATCGCTGAGCCGTTTCTTTCACGTATTGAGCGACTTTCGGGAGCG
ACTCGGCATAATATCTTCTCCTCTTCGAACAGTAGGGTAGAAGGCGTGAA
TGCGCGCCATTGTATAGATTTTTACTCGTTTTGATTATCGCTCTTTTCCA
GCCGTTTTTCGAAATGGCCAGTCGTTGAAGAAATGTCTCAAAACACTCCC
CCTCTAACGGTAGCCGGACTCGCCCACAATATATACCTCACCTGAGATCT
CGTAATCTATGACGGATACGTGAAAGGAGTAAAACCAGATAATGTTGTAT
TGCAATTTCCAACATATGTGCCAATTTTTGCTGTCTGTTTTCGAAACTCG
TTTCTCGAAAGCATTCTCTGGCGAAGTCTTACGTTTCTTGTTGACATCGG
CTTGTATGTTCACGGTCGGTACAGTACAATACTGTACAGTATAATAGCAT
TACCAACCATTGTTTTTAGAGTAAAAAGTAGTGATGCTGCTGGGAGATAG
CTACTTGTTTCTTCATAGTTCATACTGGCGTGTTACATACAGGTTTATTC
AGTTTTTTCTGGAATACATAAATTGTACTGGGTATATAGCCAGTACTTGA
GTGTGTGCAACTGCTACTGGAGATCTATACGTGCGTAATACTAACAGCTC
GTTTCGAAGAAATATTCCCAAATATGCACGTTCTTTGAAAAGCTGGATAA
CTCTCGCTTGTACAGTCCAAATCATGTGATTCGATAGGCATTTTCTTCCC
CTAATACAGCTGCACTGCAATCGGCACATGCAAGCATCTGGATGGGAGGA
ATTTCACCTTCTCTTGAAGGCGACCTTGTGGCAAATGTTGAAGAGCGTGT
CATTTTTGAAGGTGGAAAATCGCGTTCGCAAAACAGACAATCGCAACCTT
ATCATCAAAGGTACTGAGAAAAAAGTGTCAAATTTTGACGCCATAATGCC
TTGTATTTGACCAACAGGATCAACATATGATGCATCCGCTGCTGTTTAAC
GTGTCCGACAGGTCGCAAACGGTTCTTTGCAAAAAGTTGTTTTATCTGAC
GGGGTGGGATAAACTGCCAAATTCGATGACAACTTTCTTAGTTTTTGTGG
GAAATATAGAGATTCAACAGAGTCCTCAGGGCTGAGGGACGCCAGTAGTG
CAAAACGACGACAACATATACATCAAATTCCTCACTTTCTTTGCTAAGAA
ATGGCCGCCGCCGGACGAAAACAAGTGCATAATTCCGTTGCCTCAGAGCT
GAGGATGACCAGTTTTCTTGGAAACGGCTTGAACTGGCTTCATGCGACCT
GTTCTTGGCGATGTTTAAATATTTTCGTCGTCTGGATTGGGGACATGCCT
CAAGGCTAGGATATGGAAGCAGCGGAAAAGGTTTTTACCTCAGCCTTCCG
GGGGTTAAAAAAAAAAAAAAAAAGCCTCAAGGCTAAACGACATACCTCAG
GGCTAAAGGATATACCTCAAGACTAAAAGGACATGCCTCAGGGGCGAGGA
CTCAAAGACTAGAGAATATGCATGAAAATAATGCATGTGTATGCGTTTCT
CATGACTATGGATGGGACTGTCTCCCAAATGCCAGACGTCCTTGTCATCG
TAGTATCCCCTCCTAAAGTATATAAGACTCGAAATATTCAGCAACGCTTC
AACACAAACACAATATCAAAATCGTCCGAAACGTAGACTTTGCCTTACAG
ATGTCCACACGAATTGTTGCACCGTAGAGGATCAGCAACAACACGAGCCT
CCCGATTACATAAAAACATAGGTATGCGCATTGCAGAGATGGACATATTC
GATTCAGTTCGTCTGTGCCTGCATCAGAAGAACGCTAGCCATAGAACAAC
CACCCGCAGACTTTTCAAATTTATGAGACGAACAGAGGTCATCTCTATTA
CAGTAGTAGAGCAGTTCAATAGCAGACCATGCAACAACAACTAACGATGG
CCTCGCCATGCCCTATACATCCATAAATGGAAGAAGCCCACTCTCTATAA
ACCACTCTCTTTCTTGTCTACAAACTGTGCCCTCGCCAGCATAAAGGGCT
GTTTATCGTGAGGCACTCCTTGTCACTGCTGCTTGCCCGTCGAGTCACAG
TTCCGGGGAACACTAACAATGGTGCCGCACAATATTTCAGGGCGGACAAA
CCGAGTCGGCGGTCATGCATTTGCGATCATGTTCACCTCCATTTCGCTTT
CCCAGGTTGCCGGTCATTACAGACAGCCAGTATTGTGAGTTTTTGGAAGC
AGACCATTGAGTCTACTGCGTGAACAAGTATGAAACCCACGCTTCTGTCT
CTGTATACTGTATGGATGGGTTCTAATTGTTTCCTCGCCACTCAAAGAAC
TATTATATATATATATATAAAGTGTTGTTTAGAGTCAGTGACGATCAAGT
GTAACAGCTACTGTGATAATTTTTTTCTCTTGATCTCTTCTAAACCTCTT
CGGTCTACGTCCTTGAGCGCCTGTTGGATCCCAATCGTACATATTCAAGG
GCTAGGATGATTGAGGTTACTGGTACCGTAACCCCAGAGTTACGAAACAG
GGGTGCGAAGGCTTTTCAAACACGATTATCTCGACAAGGACCGTGCTAGC
TACTGAGAACAAACGATATGTTGTTGGAAATATGTTGCGGAGTTCTGTCG
GTTGGCGATTTCTTTCGGCGGCGTATGGTCTCCGTTCTTGAAATAGTTGC
GTGTGAAAAACGGTGGTACACCGGTGCAATTTCTCCGAGTTTTACGGTAT
CCGATGTTGGCATCAACTCTCGTAGTTTTCCCTCTACGGTACAGTTATTG
TTGTCCGCAGTGCTACCCTAAAATCAGCGCCGTTGTTCGCTGGTATGAAT
TTTAGAGCTACCAGTGCTTTTATACCTGATTTGAGAAGGCAATTACCGTT
CGCGACCTGTTCTCTAGCCACTCGAAAGCATACCCTGATCGATGGTCCGT
GTGGCATCAATCCTCGATGTTAATACTCGAACAGGCAATGATAGACGCTC
AAGTTGCGGAGCAGCACAATCCAACTGTCGCTTGATGGTTGTTTACACTG
TAACAGTGCGCGCAAAGTGCTCCCTGGAACGTTAAGAGCGCCATCCAACA
ATAGATGACGTGCCAGCGAAAACAAACGCTACATGAATAGTGCCCTGCTT
CGTTCTAAAATATCTAGATATTTCTTTATATGAACAATTGTCTGTCGGGA
TACCTACCAGGTATGATACAGGCTGTTCCGACTCTGTCCCTTGAACCTCA
AAAGCGACGGAAGTTACGGCAGCATTGAAATCGAGTCTTTGTTCGTGTTC
CCTCTGCTTTAGTGGGATATTGAGGGCTACGATTGCACTGTACCGTAGTG
GACAGGTGTACTGTTTCAAGAGACACCGGAGGTAAGTGTATAATTTCCCT
ACTTCTCGCAAATACATGAGTGCTTGGCTCTCTTCTCTGACTGTGTTTTG
TGGCGAATTATTGTTACTGTCCCAGGTATCATCTCTTCGAGACCATTTTG
TTCCAAGGAATCGTCGTGAGGAGACGTACGGCAAATATCGACGGCGTTTG
CTGCTCGAACGGTTGGGTGCTATCGCTACGAGTTGTCCAGCTCTAAAGGA
GGGCATGGTGTGGTAGAAACGGCGGGTCATCCTCTTCACGATCCCATCTC
GGGTCCTCAGCGACGCCCGAAAGGTGGAGTGCCGTGGGTGGTACTCGGAG
ATAATGTCAGGCCAATGGAGGAAATGCCTTCATGAAGGATGCTCCAAACA
GCCGTCGTATGGATTGGCGGGCACAAGAACGGCAGAGTTCTGTGCGCGAC
ATGCCAAAGACGGGATGGTGGACGTGGTGAGCAAACATTGCTCTTATGAG
GGCTGCTCCAAACAGCCGTCGTATGGGTTCTGGGGCAGTAGAAAGGCAGA
GTTCTGTGTGCAGCACGCCGCCGACGAGATGGTGGACGTGTTGAGCAAAA
AGTGCTGTCGTGAGGGTTGCTTGACGAGGCCGACGTACGGGTTGCGGGGC
ACCAGAAAGGCAGAGTTCTGTGTGCAGCACGCCGAAGAAGGGATGATGGA
CGTGTTGAGCAAAAGTTGCTCCCATGAGGGCTGCTCCAAACAGCCGTCGT
ATGGGTTGCGGGGCAGCAGAAAAGCAGAATTCTGTGTGCAGCACGCCGGA
GACTGGATGGTGAACGTGGTGAGAAAAAGGTGCGCTCATGAGGGCTGTTC
CAAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig1441:6859..15012-

>mRNA_H-paniculata_contig1441.2653.1 ID=mRNA_H-paniculata_contig1441.2653.1|Name=mRNA_H-paniculata_contig1441.2653.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1002bp|location=Sequence derived from alignment at H-paniculata_contig1441:6859..15012- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCAGGCCAATGGAGGAAATGCCTTCATGAAGGATGCTCCAAACAGCC
GTCGTATGGATTGGCGGGCACAAGAACGGCAGAGTTCTGTGCGCGACATG
CCAAAGACGGGATGGTGGACGTGGTGAGCAAACATTGCTCTTATGAGGGC
TGCTCCAAACAGCCGTCGTATGGGTTCTGGGGCAGTAGAAAGGCAGAGTT
CTGTGTGCAGCACGCCGCCGACGAGATGGTGGACGTGTTGAGCAAAAAGT
GCTGTCGTGAGGGTTGCTTGACGAGGCCGACGTACGGGTTGCGGGGCACC
AGAAAGGCAGAGTTCTGTGTGCAGCACGCCGAAGAAGGGATGATGGACGT
GTTGAGCAAAAGTTGCTCCCATGAGGGCTGCTCCAAACAGCCGTCGTATG
GGTTGCGGGGCAGCAGAAAAGCAGAATTCTGTGTGCAGCACGCCGGAGAC
TGGATGGTGAACGTGGTGAGAAAAAGGTGCGCTCATGAGGGCTGTTCCAA
GATGTCAGGCCAATGGAGGAAATGCCTTCATGAAGGATGCTCCAAACAGC
CGTCGTATGGATTGGCGGGCACAAGAACGGCAGAGTTCTGTGCGCGACAT
GCCAAAGACGGGATGGTGGACGTGGTGAGCAAACATTGCTCTTATGAGGG
CTGCTCCAAACAGCCGTCGTATGGGTTCTGGGGCAGTAGAAAGGCAGAGT
TCTGTGTGCAGCACGCCGCCGACGAGATGGTGGACGTGTTGAGCAAAAAG
TGCTGTCGTGAGGGTTGCTTGACGAGGCCGACGTACGGGTTGCGGGGCAC
CAGAAAGGCAGAGTTCTGTGTGCAGCACGCCGAAGAAGGGATGATGGACG
TGTTGAGCAAAAGTTGCTCCCATGAGGGCTGCTCCAAACAGCCGTCGTAT
GGGTTGCGGGGCAGCAGAAAAGCAGAATTCTGTGTGCAGCACGCCGGAGA
CTGGATGGTGAACGTGGTGAGAAAAAGGTGCGCTCATGAGGGCTGTTCCA
AG
back to top