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Homology
BLAST of mRNA_H-paniculata_contig14404.2651.1 vs. uniprot
Match: D7FGV5_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGV5_ECTSI) HSP 1 Score: 149 bits (377), Expect = 4.050e-39 Identity = 75/128 (58.59%), Postives = 91/128 (71.09%), Query Frame = 1
Query: 1 VLLRNACHVMPHLTEGWGEEEGGKGAMAFAGNEGAIVHLAEAAKALSETWQDQAGCGAGVWGAEAARFSGLCTPPSLRQGPSPRCAAPPASKEAMQPPQPAPDGSVSAELFVTVIQCFVLASHCTPAP 384
VLLRNAC V+P L++GWGE+ G AM FA E AI LAE + L++TWQD +G GAG+WGAEAA FS LC PPS R GPSPR PPA E + PP+PA D +VSA++F+ V+ CFV A HC P P
Sbjct: 891 VLLRNACMVIPGLSQGWGEDSGAA-AMEFAVKEDAIACLAEGVRGLADTWQDTSGYGAGIWGAEAAHFSALCQPPSRRLGPSPRRGTPPAPHEVVLPPRPAADAAVSADMFLLVVSCFVRAVHCAPPP 1017
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 425 |
| Cds size | 396 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig14404.2651.1 >prot_H-paniculata_contig14404.2651.1 ID=prot_H-paniculata_contig14404.2651.1|Name=mRNA_H-paniculata_contig14404.2651.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=132bp
MPHLTEGWGEEEGGKGAMAFAGNEGAIVHLAEAAKALSETWQDQAGCGAG
VWGAEAARFSGLCTPPSLRQGPSPRCAAPPASKEAMQPPQPAPDGSVSAE
LFVTVIQCFVLASHCTPAPEESDWVMVTGEGG back to topmRNA from alignment at H-paniculata_contig14404:2356..4734+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig14404.2651.1 ID=mRNA_H-paniculata_contig14404.2651.1|Name=mRNA_H-paniculata_contig14404.2651.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2379bp|location=Sequence derived from alignment at H-paniculata_contig14404:2356..4734+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCCTGCTTCGCAACGCGTGTCATGTCATGCCGCATCTGACTGAAGGGTA
AAGTGCATTCGATGTGCAGCATGGGTGATTTTTCGTTGTACACGGTTTAC
GATTGCAGGAATTTTCAAACGGATTAAATGGAAGATTTCAAATTCTCGAA
CTTGGTAAAGAGGAAAGAAGCAAAGGGTTCACGTCGTGGGCCGTGTAGTT
GCTTCCCCCGAGAGGATTCCATTTTTTTTTTTTAATTCTAGTGTGCTGCC
CTTTGTGTGTGTGTGTGTGTGTGTTTTGTGAGCGTTGATGACCGTGACCT
TTGACGTGGTTGACATGTGGTCATCATCCAACGTAAGGTACAGTAATATG
GTCATTATCCGCATATATTGTATCCGTGGTCGAATGTCATTTTAGGTATA
GACAAAATTTTGGGTAGAATTCGTTTTTCAGCTATGTCTCTTACTCTGAG
CGGTGAAAGGCTTACCATAGCTTACAGTTTGTCTTACTTGGTTTTGGGCC
GCTTTGGTCCGGTCCCGTCCGGTCTGGATCATGCAGATGGGGCGAGGAGG
AGGGTGGGAAAGGGGCGATGGCGTTTGCCGGAAATGAAGGTGCGATTGTG
CACCTAGCCGAAGCAGCGAAGGCGTTGTCAGAGACGTGGCAAGACCAGGC
GGGGTGTGGAGCGGGAGTGTGGGGTGCTGAGGTACATGGATGAAAAATTA
TTGTTTGTTTTTATATGAATACCAGTTAAAAAAAAAAAAAAAAATGATTA
CTTTTTGCATTAAAAAAAAAGTAGCGTTTTTCGTTTGTGTTATTTTTTAT
CCCTTCCCACCAGGAGAGCCCCGGCTACATCCCTGGAGTGGTTGTGATAA
ATACTGGTTTGGGATTAATTTAGTTGACTAAATAGTTCACCCCCCGGACA
AATACAAGTACTTGCAAATGGTTTTCACAAAGAATATATATATATATATA
TATATATATAAAAAGGAAGTATTCGCCCGAGTTTCAGATTGATGTCGGGT
ATTTTACATGCCCCGGACTATCCATGACTGCTAAGAAATACTCGTAAATT
GAATGTACAACGGTGGGTACTTTTTTCTGTGTCCGCTCATTCTGAAACTC
AGGCGGATACTTTCAGTTTTTTTGTGAAAATTATTTGTAAGTATTCGTTT
TTGTCCGGGGAGGTGCAATAGTTGTCCGGGGCGTGAATGGTGTCTGGTAC
TCAATTGGCCCATGAGGCCGAATGGTTCTCTCATCGTCTTGCTTGTGGCA
TTGGAAACCCGGTGTAGGATATCGTTGTAGGGGACAGGGGCTTAGAGTTC
TCAGAGATCAATGTAACCATCGAAAAAATGTACTATCCACATTTGCCCCT
CAAAAGTCGTGTGGCTGTCTTGCGATGAATCGAGCAGAATAATGACAAGT
GTCATTTTACAATCAAATAGTCATATTCCAAACTGTTGAGCTATGGTGAT
GCATACCAAATAAAATGTTTAAAAGAAGAAAAAAATGCTGAGAAAAATGT
GGTAGGAGTATGGCCACTTCTACAATTGGCCTGTGTGGTCATACTTCAGT
CCGTGCTTTGTCCTCAACCCACACGCGAGGGCTCCACGGAAGATTATTGT
TCCAGAAGTTACTCGAGCATACAGTTGAAAAATTGTTCCGAAATAAAACT
TCATCAGGTAAGAATACTTCTCCTGCGAAGTTAGTTCGCGATACTGCGTA
AGGTAGACGTGAACTTTTTTTGGCGTGTTTCAGGTTTATTTCATGTATGT
ATTTAAAGAAATCAAAATAACACACTAATGTATATACATTGCGGAGAGCA
CGTTCCTGACGTTCCTGAGCCCTGGCCTCCTACGTAGTAACCAATTATGT
TCTTGTGGTGCTCTCGGAAGAGCTTTTCCAGCTGCTTCTGACTCTGGATG
ACCAATTCATCGACAACAGAATAAAGGCCAAGTGGGTGCTTCGGACTACA
TCCCGAGACTTGAAAGCAACCCGTCGAGCCAGCGGTGTCTCCTCGAAAGC
CAGTCTATCCTGGGAGCATCGTCATCTCATTTCGCTTTCGTACATAAATA
TTTATTTATCCAATCGAGATAGAACCGATTTTTTATTCGCTCCCTTTCTC
CGATGTTCGTCCCTCCCTTCCTCTCCCTTCCCTTCCGCTCTCCCGCAGGC
GGCCCGATTCTCCGGTCTGTGCACACCGCCGTCCCTCCGTCAAGGTCCGT
CCCCGCGCTGTGCCGCTCCGCCCGCCTCAAAGGAAGCCATGCAGCCGCCC
CAGCCCGCCCCTGATGGCTCCGTGTCCGCCGAGCTGTTCGTAACGGTCAT
TCAGTGCTTCGTGCTTGCCAGTCATTGCACTCCTGCCCCCGAAGAGTCGG
ACTGGGTAATGGTGACGGGGGAGGGTGGG back to topCoding sequence (CDS) from alignment at H-paniculata_contig14404:2356..4734+ >mRNA_H-paniculata_contig14404.2651.1 ID=mRNA_H-paniculata_contig14404.2651.1|Name=mRNA_H-paniculata_contig14404.2651.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=792bp|location=Sequence derived from alignment at H-paniculata_contig14404:2356..4734+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCGCATCTGACTGAAGGATGCCGCATCTGACTGAAGGATGGGGCGAG
GAGGAGGGTGGGAAAGGGGCGATGGCGTTTGCCGGAAATGAAGGTGCGAT
TGTGCACCTAGCCGAAGCAGCGAAGGCGTTGTCAGAGACGTGGCAAGACC
AGGCGGGGTGTGGAGCGGGAGTGTGGGGTGCTGAGATGGGGCGAGGAGGA
GGGTGGGAAAGGGGCGATGGCGTTTGCCGGAAATGAAGGTGCGATTGTGC
ACCTAGCCGAAGCAGCGAAGGCGTTGTCAGAGACGTGGCAAGACCAGGCG
GGGTGTGGAGCGGGAGTGTGGGGTGCTGAGGCGGCCCGATTCTCCGGTCT
GTGCACACCGCCGTCCCTCCGTCAAGGTCCGTCCCCGCGCTGTGCCGCTC
CGCCCGCCTCAAAGGAAGCCATGCAGCCGCCCCAGCCCGCCCCTGATGGC
TCCGTGTCCGCCGAGCTGTTCGTAACGGTCATTCAGTGCTTCGTGCTTGC
CAGTCATTGCACTCCTGCCCCCGAAGAGTCGGACTGGGTAATGGTGACGG
GGGAGGGTGGGGCGGCCCGATTCTCCGGTCTGTGCACACCGCCGTCCCTC
CGTCAAGGTCCGTCCCCGCGCTGTGCCGCTCCGCCCGCCTCAAAGGAAGC
CATGCAGCCGCCCCAGCCCGCCCCTGATGGCTCCGTGTCCGCCGAGCTGT
TCGTAACGGTCATTCAGTGCTTCGTGCTTGCCAGTCATTGCACTCCTGCC
CCCGAAGAGTCGGACTGGGTAATGGTGACGGGGGAGGGTGGG back to top
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