mRNA_H-paniculata_contig1440.2647.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1440.2647.1
Unique NamemRNA_H-paniculata_contig1440.2647.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1440.2647.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1440contigH-paniculata_contig1440:4443..5213 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size772
Cds size399
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929146.4898381-UTR-H-paniculata_contig1440:4442..48141622929146.4898381-UTR-H-paniculata_contig1440:4442..4814Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1440 4443..4814 +
1691480749.14305-UTR-H-paniculata_contig1440:4442..48141691480749.14305-UTR-H-paniculata_contig1440:4442..4814Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1440 4443..4814 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929146.5031908-CDS-H-paniculata_contig1440:4814..52131622929146.5031908-CDS-H-paniculata_contig1440:4814..5213Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1440 4815..5213 +
1691480749.1524825-CDS-H-paniculata_contig1440:4814..52131691480749.1524825-CDS-H-paniculata_contig1440:4814..5213Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1440 4815..5213 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1440.2647.1prot_H-paniculata_contig1440.2647.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1440 4815..5213 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1440.2647.1

>prot_H-paniculata_contig1440.2647.1 ID=prot_H-paniculata_contig1440.2647.1|Name=mRNA_H-paniculata_contig1440.2647.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=133bp
MSWLFLLPLSAATRRPLYTLSCACFHCRGRRPNPTITATSHYDGLDMFNL
VAAHGIIIEAQLICYPGPTKVSTVLKSCVVQLSARATGVPLPVPRQAARE
NMIPHIRALSATRATRCSIQLAAAHHATHTRIL
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mRNA from alignment at H-paniculata_contig1440:4443..5213+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1440.2647.1 ID=mRNA_H-paniculata_contig1440.2647.1|Name=mRNA_H-paniculata_contig1440.2647.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=771bp|location=Sequence derived from alignment at H-paniculata_contig1440:4443..5213+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCTCGAGTGCTAGCTCCACCCCTTCCCCTGTTTCCGCGCCCACTGCCAG
CCCCCGCACCCGACATGATGCCTTGCCTCGAGTCGTTATTGGGATGCGCG
TGTACGATGCGAGCTGGTCGCGTGGCCGCTCCGGCCGCGGAGCTTGTGTC
AGACGGCGTCTGCTGCTGGGCAAACGCCACGCCATTGGTGTTGGCATTTC
CACGTGGGCGTGCGTGAGTTGAGGATGAGGAGAAGCTCACAGTGGTGTTG
CCGTTGTTGTTGCCGCCGGTGCTGCCACCTACTGCTGCCTTTGGTCTACT
GGTGTTGCTTCTGGTTCTGCTGGTGTCAATATCGTTGCTATTATTGTCAC
TGCCTCCTTGAATAGTAGTGCTATGAGCTGGTTGTTCTTGTTGCCGTTGT
CCGCTGCCACTAGACGACCTCTCTACACTCTCTCGTGTGCCTGTTTTCAC
TGCCGCGGCCGTAGACCCAATCCGACGATCACTGCTACCTCCCACTACGA
CGGCTTGGACATGTTTAACCTTGTTGCTGCACATGGCATCATCATCGAGG
CACAACTCATTTGCTACCCGGGCCCCACCAAGGTTTCCACTGTCCTGAAG
TCGTGCGTAGTCCAACTTTCCGCCAGAGCTACTGGAGTGCCGTTGCCCGT
TCCCAGGCAAGCAGCACGAGAAAATATGATTCCCCATATACGTGCTCTAT
CAGCAACTAGAGCAACCAGGTGCTCTATTCAGCTCGCTGCAGCTCACCAT
GCGACACACACGAGGATTCTT
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Coding sequence (CDS) from alignment at H-paniculata_contig1440:4443..5213+

>mRNA_H-paniculata_contig1440.2647.1 ID=mRNA_H-paniculata_contig1440.2647.1|Name=mRNA_H-paniculata_contig1440.2647.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=798bp|location=Sequence derived from alignment at H-paniculata_contig1440:4443..5213+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGCTGGTTGTTCTTGTTGCCGTTGTCCGCTGCCACTAGACGACCTCT
CTACACTCTCTCGTGTGCCTGTTTTCACTGCCGCGGCCGTAGACCCAATC
CGACGATCACTGCTACCTCCCACTACGACGGCTTGGACATGTTTAACCTT
GTTGCTGCACATGGCATCATCATCGAGGCACAACTCATTTGCTACCCGGG
CCCCACCAAGGTTTCCACTGTCCTGAAGTCGTGCGTAGTCCAACTTTCCG
CCAGAGCTACTGGAGTGCCGTTGCCCGTTCCCAGGCAAGCAGCACGAGAA
AATATGATTCCCCATATACGTGCTCTATCAGCAACTAGAGCAACCAGGTG
CTCTATTCAGCTCGCTGCAGCTCACCATGCGACACACACGAGGATTCTTA
TGAGCTGGTTGTTCTTGTTGCCGTTGTCCGCTGCCACTAGACGACCTCTC
TACACTCTCTCGTGTGCCTGTTTTCACTGCCGCGGCCGTAGACCCAATCC
GACGATCACTGCTACCTCCCACTACGACGGCTTGGACATGTTTAACCTTG
TTGCTGCACATGGCATCATCATCGAGGCACAACTCATTTGCTACCCGGGC
CCCACCAAGGTTTCCACTGTCCTGAAGTCGTGCGTAGTCCAACTTTCCGC
CAGAGCTACTGGAGTGCCGTTGCCCGTTCCCAGGCAAGCAGCACGAGAAA
ATATGATTCCCCATATACGTGCTCTATCAGCAACTAGAGCAACCAGGTGC
TCTATTCAGCTCGCTGCAGCTCACCATGCGACACACACGAGGATTCTT
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