mRNA_H-paniculata_contig14398.2642.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14398.2642.1
Unique NamemRNA_H-paniculata_contig14398.2642.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig14398.2642.1 vs. uniprot
Match: A0A6H5JZ97_9PHAE (CS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JZ97_9PHAE)

HSP 1 Score: 338 bits (866), Expect = 1.820e-107
Identity = 229/467 (49.04%), Postives = 272/467 (58.24%), Query Frame = 2 
Query:   71 RRFDDVLMTMAGQAGSLEVLLRIFFSFLHRQTDLYVTYDPRKTSRAGMGFPPGTAEKLLLKAFRALPFKPYTDNNSTLSSXXXXXXXXXXXXXXXSRITTNKVSTADVVKGGSTIRRSPNTLPAKACYSRGEATTXXXXXXXXXXXXXXXXXAAEATGNP---PLASPASPAPPVTENRAVDKKKNDRPSASLDVATHTKSGTTIMAPSFSIATAPAPAMDPAPTGGTQDGETAGKTDDNAGTIRVRYTEDGKQIPIGNGGVTPRYYWTQTVTEATVYVDVPQGTRARDVSCTIEPRRLRLEVRGAAAAVAIATASSTLFASVANAPGGVKPETNSKAGERTVVDGDVIIDGILPSAISRDDSLWSLNDGNSVVISLEKVKRSWWESVVEGDPEIDTTKVDSTSKIGEFDEETQGTIRKIMFDQRQKMLGLPSSDQLSAESVLEKAKGLPGSPFLPGGVMFDAGDRG 1462
            R+FDDVL  +AGQAGSLE LL  FFSFLHR TD YVT+DP KT+RAGMGFP G AEKLLL+AFR+ P+K Y   +  L +                     K+  A    GGST R++   +   A  S G A  XXXXXXXXXXXXXXXXX           P     +P+             N +P+A                                                 AG I VRYTEDGKQ+PIGNGGVT RYYWTQTV EATVYVDVP GTR++DV+C I+PR L+L+VRGA  A                  G                  DV+ DG LPSA+SR+DS+WSLNDG +VVIS EK  +SWW+SVVEGDPEIDT+KVDST+KI E+D ETQG IRKIMFDQRQK LGLP+SD+L+A+++LE+AK LPGSPFLPGGV+F+ GD G
Sbjct:    6 RKFDDVLRNLAGQAGSLEALLGAFFSFLHRNTDFYVTFDPTKTARAGMGFPAGKAEKLLLRAFRSFPYKSYGVQDEQLPAAAGRGRGPSTA----KETAATKIGPA----GGSTSRKNDTGVDT-ALGSGGPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPGEGSVAPSSXXXXXXXXPTTANGKPAA-------------------------------------------------AGCISVRYTEDGKQVPIGNGGVTDRYYWTQTVNEATVYVDVPPGTRSKDVTCIIQPRWLKLKVRGAGTAXXXXXXXXXXXXXXXXXXGAE----------------DVVFDGELPSAVSREDSMWSLNDGKTVVISFEKTTKSWWKSVVEGDPEIDTSKVDSTTKISEYDGETQGAIRKIMFDQRQKSLGLPTSDELNADALLERAKVLPGSPFLPGGVLFE-GDCG 397
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BLAST of mRNA_H-paniculata_contig14398.2642.1 vs. uniprot
Match: A0A7S2SV46_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SV46_9STRA)

HSP 1 Score: 204 bits (519), Expect = 6.580e-57
Identity = 106/216 (49.07%), Postives = 140/216 (64.81%), Query Frame = 2 
Query:  797 VRYTEDGKQIPIGNGGVTPRYYWTQTVTEATVYVDVPQGTRARDVSCTIEPRRLRLEVRGAAAAVAIATASSTLFASVANAPGGVKPETNSKAGERTVVDGDVIIDGILPSAISRDDSLWSLNDG-----NSVVISLEKVKRSWWESVVEGDPEIDTTKVDSTSKIGEFDEETQGTIRKIMFDQRQKMLGLPSSDQLSAESVLEKAKGLPGSPFLP 1429
            V+YT+ GKQ+PIGNGGVT RY WTQT+ E TVY+ VPQGTRA D+ CTI P++L+L+++                          +PE               I+DG +P  +  D+S+W + D       +VVI+L+K+K++WW+ VV GDP ID T VDST KI E+D ETQG IRKIMFDQ+QK LGLP+SD+L+ E++LEKAK +PGSPFLP
Sbjct:  171 VKYTDKGKQVPIGNGGVTSRYTWTQTLYEVTVYIPVPQGTRAADILCTIAPKKLQLKLKK-------------------------EPEW--------------ILDGDMPETVRPDESMWVVEDDPAGDFGTVVITLDKIKKTWWDVVVVGDPAIDATMVDSTCKIDEYDPETQGAIRKIMFDQKQKSLGLPTSDELTTEAILEKAKYMPGSPFLP 347
[Close]
BLAST of mRNA_H-paniculata_contig14398.2642.1 vs. uniprot
Match: A0A7S3XL32_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XL32_HETAK)

HSP 1 Score: 201 bits (511), Expect = 1.150e-55
Identity = 115/282 (40.78%), Postives = 162/282 (57.45%), Query Frame = 2 
Query:  593 NRAVDKKKNDRPSASLDVATHTKSGTTIMAPSFSIATAPAPAMDPAPTGGTQDGETAGKTDDNAGTIRVRYTEDGKQIPIGNGGVTPRYYWTQTVTEATVYVDVPQGTRARDVSCTIEPRRLRLEVRGAAAAVAIATASSTLFASVANAPGGVKPETNSKAGERTVVDGDVIIDGILPSAISRDDSLWSLNDGNSVVISLEKVKRSWWESVVEGDPEIDTTKVDSTSKIGEFDEETQGTIRKIMFDQRQKMLGLPSSDQLSAESVLEKAKGLPGSPFLPGGV 1438
            N + ++KK D PSA+   A H  +G  +        TAPAP   PA +G                 + VRYT++G QIPIGNGG+T  YYWTQT+ E T+YVD+P GTRA+D+   I P  ++++++                                        + + II+G  P   +  +S+W+L D  ++VI+LEKV ++WW SV++GDPEID  KVDST+K+ ++DEETQ TIRKIMFDQ+QK LGLP+S++L  + +LE+AK   GSPFLPGG 
Sbjct:  132 NDSQEQKKPDGPSAA---AAHENAGDQLQR-----GTAPAPV--PASSGPG---------------LEVRYTDEGLQIPIGNGGITENYYWTQTLGEVTLYVDIPAGTRAKDLQVEISPSSIKIKLKA---------------------------------------ESEAIIEGEFPHTANASESMWTLEDNRTLVITLEKVTQTWWRSVIKGDPEIDAQKVDSTTKVEDYDEETQATIRKIMFDQKQKALGLPTSEELKMQGILEQAKYAKGSPFLPGGA 349
[Close]
BLAST of mRNA_H-paniculata_contig14398.2642.1 vs. uniprot
Match: A0A2D4C6K1_PYTIN (CS domain-containing protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C6K1_PYTIN)

HSP 1 Score: 182 bits (461), Expect = 5.120e-49
Identity = 94/209 (44.98%), Postives = 133/209 (63.64%), Query Frame = 2 
Query:  797 VRYTEDGKQIPIGNGGVTPRYYWTQTVTEATVYVDVPQGTRARDVSCTIEPRRLRLEVRGAAAAVAIATASSTLFASVANAPGGVKPETNSKAGERTVVDGDVIIDGILPSAISRDDSLWSLNDGNSVVISLEKVKRSWWESVVEGDPEIDTTKVDSTSKIGEFDEETQGTIRKIMFDQRQKMLGLPSSDQLSAESVLEKAKGLPGSPF 1423
            V+ T+ GKQ+PIGNGG+T +Y WTQT+ + TV V VP+GT A+ + C I P+RLR+ VR +       +  ST   SV                        V++DG  P  I  D+SLWSL +G+++ +SLEK++++WW SV+ GD EIDT++VDST  IGE+D  TQG IRK MFDQ+Q+ LGLP+S++L+ + +L KA+  P SP 
Sbjct:  133 VKLTDKGKQLPIGNGGITDKYTWTQTLEDVTVLVPVPEGTSAKQIECDIRPQRLRVAVRSS-------STHSTKNPSV------------------------VLLDGEFPEKIRADESLWSLENGHTLELSLEKIRQTWWASVLRGDAEIDTSEVDSTRAIGEYDAATQGAIRKAMFDQQQRQLGLPTSEELATQELLAKARLAPNSPI 310
[Close]
BLAST of mRNA_H-paniculata_contig14398.2642.1 vs. uniprot
Match: A0A835Z5P8_9STRA (Nuclear migration protein nudC-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5P8_9STRA)

HSP 1 Score: 176 bits (446), Expect = 2.420e-47
Identity = 102/231 (44.16%), Postives = 136/231 (58.87%), Query Frame = 2 
Query:  770 TDDNAGTIRVRYTEDG-KQIPIGNGGVTPR--YYWTQTVTEATVYVDVPQGTRARDVSCTIEPRRLRLEVRGAAAAVAIATASSTLFASVANAPGGVKPETNSKAGERTVVDGDVIIDGILPSAISRDDSLWSLNDGNSV-VISLEKVKRSWWESVVEGDPEIDTTKVDSTSKIGEFDEETQGTIRKIMFDQRQKMLGLPSSDQLSAESVLEKAKGLPGSPFLPGGVMFDA 1450
            T D  G    +  + G KQ P+GNGG  P   Y WTQT+ E TVYVDVP+GTR RD+ C I  R L  +++GA                     GG +                     I  +A++   SLW+L+  + V V++LEKV ++WW   +EG PEIDT+KVDST K+G++DE+TQ  IRKIMFDQ+QK +GLP+SD+L+A  +LEKAK  PGSPF+PGG + DA
Sbjct:   72 TTDGGGVTAQQSQQPGTKQTPVGNGGACPDHGYCWTQTLQEVTVYVDVPKGTRGRDMVCDIGTRSLSCKLKGA---------------------GGQQASKE-----------------IPFTALAARRSLWNLDSDDGVLVVTLEKVAKTWWACALEGHPEIDTSKVDSTCKVGDYDEDTQAAIRKIMFDQKQKRMGLPTSDELTASDLLEKAKLAPGSPFMPGGPLADA 264
[Close]
BLAST of mRNA_H-paniculata_contig14398.2642.1 vs. uniprot
Match: A0A7R9U371_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U371_9STRA)

HSP 1 Score: 175 bits (444), Expect = 3.190e-46
Identity = 94/213 (44.13%), Postives = 128/213 (60.09%), Query Frame = 2 
Query:  797 VRYTEDGKQIPIGNGGVTPRYYWTQTVTEATVYVDVPQGTRARDVSCTIEPRRLRLEVRGAAAAVAIATASSTLFASVANAPGGVKPETNSKAGERTVVDGDVIIDGILPSAISRDDSLWSLNDGNSVVISLEKVKRSWWESVVEGDPEIDTTKVDSTSKIGEFDEETQGTIRKIMFDQRQKMLGLPSSDQLSAESVLEKAKGLPGSPFLPGG 1435
            ++  EDGKQIP+ NGG T +Y W+QT+ EAT++V +P+G RARD+   I P  L +                                       R   D DVI+ G  P  I  D+S+W++++G  + ISL+K  R+WW S + GD EIDTT+VDS +KI ++D+ETQG IRKIMFDQ+QK LGLP+SD+L  + + E+AK  PGSPFLPGG
Sbjct:  162 LKVNEDGKQIPVNNGGATDKYVWSQTLGEATMHVPLPEGMRARDIRVEILPSGLTV---------------------------------------RKKADDDVILAGQWPRRIQGDESVWTVDNG-ILTISLDKADRAWWSSALVGDVEIDTTQVDSRTKIDDYDDETQGVIRKIMFDQKQKALGLPTSDELEKQELFERAKFAPGSPFLPGG 334
[Close]
BLAST of mRNA_H-paniculata_contig14398.2642.1 vs. uniprot
Match: A0A7S1VZ48_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1VZ48_9STRA)

HSP 1 Score: 163 bits (412), Expect = 3.310e-43
Identity = 92/216 (42.59%), Postives = 130/216 (60.19%), Query Frame = 2 
Query:  797 VRYTEDGKQIPIGNGGVTPRYYWTQTVTEATVYVDVPQGTRARDVSCTIEPRRLRLEVRGAAAAVAIATASSTLFASVANAPGGVKPETNSKAGERTVVDGDVIIDGILPSAISRDDSLWSLNDGNSVVISLEKVKRSWWESVVEGDPEIDTTKVDSTSKIGEFDEETQGTIRKIMFDQRQKMLGLPSSDQLSAESVLEKAKGLPGSPFLPGGVMF 1444
            VRYTE+GKQ P+GNGG T RY WTQT+ E +V + VP+GTR +D+   I+   L                      SV    G  K E   +A    +++GD++        I  D+S WSL +G ++V++L+KVK++WWE+V+ GD +IDTT VDST KIGE+D+ TQG IRKI+FDQRQ+ LGLP+SD++  + ++         P LP GV +
Sbjct:   18 VRYTEEGKQKPVGNGGSTNRYRWTQTINETSVIIGVPEGTRGKDLDVIIKASSL----------------------SVRLTKGPPKKENEDEAPSPILLEGDLV------EKIRTDESTWSL-EGGALVLTLDKVKKTWWETVLIGDEKIDTTLVDSTRKIGEYDDATQGAIRKILFDQRQERLGLPTSDEILGKKLI---------PPLPPGVEY 195
[Close]
BLAST of mRNA_H-paniculata_contig14398.2642.1 vs. uniprot
Match: A0A6A3ZNN1_9STRA (CS domain-containing protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3ZNN1_9STRA)

HSP 1 Score: 164 bits (415), Expect = 1.590e-42
Identity = 88/214 (41.12%), Postives = 131/214 (61.21%), Query Frame = 2 
Query:  794 RVRYTEDGKQIPIGNGGVTPRYYWTQTVTEATVYVDVPQGTRARDVSCTIEPRRLRLEVRGAAAAVAIATASSTLFASVANAPGGVKPETNSKAGERTVVDGDVIIDGILPSAISRDDSLWSLNDGNSVVISLEKVKRSWWESVVEGDPEIDTTKVDSTSKIGEFDEETQGTIRKIMFDQRQKML--GLPSSDQLSAESVLEKAKGLPGSPFLP 1429
            + + TEDGKQ+P+GNGGV   Y W QT+ + ++ +++PQGTRA+D++C IE  RLR+ ++                    + PG  KP                +++G LP  I  D+S+WSL   +++ ISLEK+K +WW + ++G PEIDT+KVDS   I E+DE TQG IRK ++DQRQ+ L   +P + +   E ++++AKGLPGSPFLP
Sbjct:  125 KPQLTEDGKQVPVGNGGVAANYTWAQTLEDVSIQMELPQGTRAKDLNCRIESTRLRVAMK--------------------SDPG--KP----------------LLEGELPEKIRADESIWSLESNHTLNISLEKIKPTWWATALKGGPEIDTSKVDSRRNIHEYDEATQGAIRKAVYDQRQQQLHGAMPLTPE---EKMMQEAKGLPGSPFLP 297
[Close]
BLAST of mRNA_H-paniculata_contig14398.2642.1 vs. uniprot
Match: A0A7S3H6E3_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H6E3_9STRA)

HSP 1 Score: 164 bits (415), Expect = 2.730e-42
Identity = 83/212 (39.15%), Postives = 120/212 (56.60%), Query Frame = 2 
Query:  803 YTEDGKQIPIGNGGVTPRYYWTQTVTEATVYVDVPQGTRARDVSCTIEPRRLRLEVRGAAAAVAIATASSTLFASVANAPGGVKPETNSKAGERTVVDGDVIIDGILPSAISRDDSLWSLNDGNS-----VVISLEKVKRSWWESVVEGDPEIDTTKVDSTSKIGEFDEETQGTIRKIMFDQRQKMLGLPSSDQLSAESVLEKAKGLPGSPF 1423
            YT DGKQ PIGNGG+   YYWTQT+ + TVY+D   G R +DV C I+ + L++ +RG                                         +V++DG L   +   +S+W+++         +VI+LEK + +WW+ V+ G  EIDTTKVDST  IGE+D+ TQ  IRKIMFDQ+QK+LG P+S++ + +++L KA  +PGSP 
Sbjct:  153 YTPDGKQYPIGNGGIGENYYWTQTLRDVTVYIDTAAGCRGKDVKCDIKAQALKVAIRG-----------------------------------------EVVVDGALEGVVKTQESMWTISTTTDSAIQQIVITLEKTRPTWWKHVISGHEEIDTTKVDSTQNIGEYDDNTQAAIRKIMFDQKQKLLGQPTSEESAMDALLAKASLVPGSPI 323
[Close]
BLAST of mRNA_H-paniculata_contig14398.2642.1 vs. uniprot
Match: A0A6S8EVI0_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A6S8EVI0_9STRA)

HSP 1 Score: 161 bits (407), Expect = 5.180e-42
Identity = 85/212 (40.09%), Postives = 122/212 (57.55%), Query Frame = 2 
Query:  800 RYTEDGKQIPIGNGGVTPRYYWTQTVTEATVYVDVPQGTRARDVSCTIEPRRLRLEVRGAAAAVAIATASSTLFASVANAPGGVKPETNSKAGERTVVDGDVIIDGILPS--AISRDDSLWSLNDG-NSVVISLEKVKRSWWESVVEGDPEIDTTKVDSTSKIGEFDEETQGTIRKIMFDQRQKMLGLPSSDQLSAESVLEKAKGLPGSPFL 1426
            RY +DGKQ+P GNGG    YYW Q++ E T+YV VP GT ++D+ C I+P  +R+ V+G +                                        +I++G  P    ++  +  WS  +  N++ ISL+K +++WW SVV+G+PEIDT  VDS  K+ E+D+ETQ TIR+IMFDQ QK  GLP+S +++   VLEKAK + GSPFL
Sbjct:   71 RYNKDGKQVPEGNGGKGENYYWQQSLYEITIYVQVPPGTNSKDIVCEIDPGTIRVGVKGKS----------------------------------------LILEGNYPENYKVNTGECFWSFEEAENTITISLDKREQTWWPSVVQGEPEIDTQNVDSKRKVDEYDDETQATIRRIMFDQNQKRKGLPTSGEITTNGVLEKAKYIKGSPFL 242
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14398.2642.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JZ97_9PHAE1.820e-10749.04CS domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
A0A7S2SV46_9STRA6.580e-5749.07Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3XL32_HETAK1.150e-5540.78Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A2D4C6K1_PYTIN5.120e-4944.98CS domain-containing protein n=2 Tax=Pythium insid... [more]
A0A835Z5P8_9STRA2.420e-4744.16Nuclear migration protein nudC-like protein n=1 Ta... [more]
A0A7R9U371_9STRA3.190e-4644.13Hypothetical protein n=2 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1VZ48_9STRA3.310e-4342.59Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A6A3ZNN1_9STRA1.590e-4241.12CS domain-containing protein n=2 Tax=Phytophthora ... [more]
A0A7S3H6E3_9STRA2.730e-4239.15Hypothetical protein n=2 Tax=Spumella elongata Tax... [more]
A0A6S8EVI0_9STRA5.180e-4240.09Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14398contigH-paniculata_contig14398:52..5375 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score341.7
Seed ortholog evalue6e-91
Seed eggNOG ortholog2880.D8LL35
Preferred nameNUDCD3
KEGG koko:K21867
KEGG TC1.A.1.4
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005856,GO:0005868,GO:0005875,GO:0006457,GO:0006810,GO:0006996,GO:0007097,GO:0008104,GO:0008150,GO:0009987,GO:0012505,GO:0015630,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0030286,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044085,GO:0044380,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044782,GO:0046907,GO:0051082,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051647,GO:0051649,GO:0051656,GO:0060271,GO:0070727,GO:0070925,GO:0071539,GO:0071840,GO:0072698,GO:0120031,GO:0120036,GO:1902494,GO:1905508,GO:1905793
EggNOG free text desc.unfolded protein binding
EggNOG OGsKOG2265@1,KOG2265@2759
Ec32 ortholog descriptionHSP20-like chaperone
Ec32 orthologEc-26_003380.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Exons4
Model size1748
Cds size1518
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14398.2642.1prot_H-paniculata_contig14398.2642.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14398 224..5317 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929145.5021796-UTR-H-paniculata_contig14398:51..2231622929145.5021796-UTR-H-paniculata_contig14398:51..223Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14398 52..223 -
1691480748.8335373-UTR-H-paniculata_contig14398:51..2231691480748.8335373-UTR-H-paniculata_contig14398:51..223Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14398 52..223 -
1622929145.614063-UTR-H-paniculata_contig14398:5317..53751622929145.614063-UTR-H-paniculata_contig14398:5317..5375Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14398 5318..5375 -
1691480748.8752098-UTR-H-paniculata_contig14398:5317..53751691480748.8752098-UTR-H-paniculata_contig14398:5317..5375Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14398 5318..5375 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929145.5230544-CDS-H-paniculata_contig14398:223..5411622929145.5230544-CDS-H-paniculata_contig14398:223..541Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14398 224..541 -
1691480748.8439426-CDS-H-paniculata_contig14398:223..5411691480748.8439426-CDS-H-paniculata_contig14398:223..541Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14398 224..541 -
1622929145.5461855-CDS-H-paniculata_contig14398:2913..33001622929145.5461855-CDS-H-paniculata_contig14398:2913..3300Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14398 2914..3300 -
1691480748.8518116-CDS-H-paniculata_contig14398:2913..33001691480748.8518116-CDS-H-paniculata_contig14398:2913..3300Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14398 2914..3300 -
1622929145.5633774-CDS-H-paniculata_contig14398:4447..48491622929145.5633774-CDS-H-paniculata_contig14398:4447..4849Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14398 4448..4849 -
1691480748.8598585-CDS-H-paniculata_contig14398:4447..48491691480748.8598585-CDS-H-paniculata_contig14398:4447..4849Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14398 4448..4849 -
1622929145.5784342-CDS-H-paniculata_contig14398:4906..53171622929145.5784342-CDS-H-paniculata_contig14398:4906..5317Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14398 4907..5317 -
1691480748.8673377-CDS-H-paniculata_contig14398:4906..53171691480748.8673377-CDS-H-paniculata_contig14398:4906..5317Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14398 4907..5317 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14398.2642.1

>prot_H-paniculata_contig14398.2642.1 ID=prot_H-paniculata_contig14398.2642.1|Name=mRNA_H-paniculata_contig14398.2642.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=506bp
MSTDRRFDDVLMTMAGQAGSLEVLLRIFFSFLHRQTDLYVTYDPRKTSRA
GMGFPPGTAEKLLLKAFRALPFKPYTDNNSTLSSSSSSKSNSSGSSSSKS
RITTNKVSTADVVKGGSTIRRSPNTLPAKACYSRGEATTTTTKTKKTTAP
SPPPPPAAEATGNPPLASPASPAPPVTENRAVDKKKNDRPSASLDVATHT
KSGTTIMAPSFSIATAPAPAMDPAPTGGTQDGETAGKTDDNAGTIRVRYT
EDGKQIPIGNGGVTPRYYWTQTVTEATVYVDVPQGTRARDVSCTIEPRRL
RLEVRGAAAAVAIATASSTLFASVANAPGGVKPETNSKAGERTVVDGDVI
IDGILPSAISRDDSLWSLNDGNSVVISLEKVKRSWWESVVEGDPEIDTTK
VDSTSKIGEFDEETQGTIRKIMFDQRQKMLGLPSSDQLSAESVLEKAKGL
PGSPFLPGGVMFDAGDRGNVRSSSSTRPIEFPPAEKGGFTVDFEPGSAAI
PLDDS*
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mRNA from alignment at H-paniculata_contig14398:52..5375-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14398.2642.1 ID=mRNA_H-paniculata_contig14398.2642.1|Name=mRNA_H-paniculata_contig14398.2642.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5324bp|location=Sequence derived from alignment at H-paniculata_contig14398:52..5375- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGATCCTATGCCGTGTGTTGCAACCAACTCGATACAAGAGACAAGGGAT
CAATCACCATGTCGACAGATAGGAGATTCGACGATGTGCTCATGACAATG
GCCGGCCAGGCCGGGTCGCTGGAGGTCTTGCTACGCATCTTCTTCTCCTT
CTTGCACCGACAGACCGACCTCTACGTAACGTACGATCCCAGGAAGACTA
GCCGAGCAGGGATGGGCTTCCCCCCTGGTACAGCCGAGAAGCTTCTGCTT
AAGGCCTTCAGAGCCCTCCCCTTCAAACCGTACACCGACAACAACAGCAC
TTTGAGTAGTAGCAGCAGTAGTAAAAGCAATAGCAGCGGCAGTAGCAGCA
GCAAGTCGAGAATAACGACAAACAAGGTCTCCACGGCCGATGTTGTGAAG
GGAGGTTCAACAATTCGGCGCAGTCCCAACACGCTTCCAGCCAAGGCGTG
CTACTCTCGAGGGGAAGCAGCAGCAGCAGCAACAGCAACAGCAACAGCAA
CAGCAACAACAACAACAACAACAACAACAACAACAACAACAAAAACAAAA
AAAACAACAGCACCATCACCACCACCACCACCAGCAGCAGAAGCTACGGG
AAACCCACCACTAGCGTCACCAGCATCACCAGCACCGCCAGTAACAGAAA
ACAGGGCCGTAGACAAGAAGAAAAATGACAGACCCTCGGCATCGCTGGAC
GTAGCAACCCATACAAAATCTGGTACAACCATCATGGCTCCATCTTTTTC
GATAGCAACGGCACCTGCACCGGCCATGGACCCGGCGCCGACGGGGGGGA
CGCAGGACGGGGAGACTGCAGGAAAGACGGACGATAATGCGGGGACAATA
CGAGTGCGCTACACGGAAGATGGGAAGCAGATCCCGATCGGTAATGGCGG
GGTGACTCCACGCTACTACTGGACGCAAGTAAGTCGGATTTTTTCCCGAC
ATGACACGTGCAGATAGGGTGCTGTTCAAGCAGGCGCAGACAGTCAGTAC
AGAGACAACGAAGATAGGAGTTGGCACAGTTGTTCTGCATGCCACGACTG
CAGTGCTTGGTAGAAACGCGAAGCATAAAACGCACGCTGAGGCGCTAACG
TGCAGCAATGTGCCTACAACAAATACCAGATGATACGAGGTCCATATGAC
CGTTCATCTCATGAAAACCTTCAACAAACCATGTTCACAGCCGATGGCAG
TGTACCCTACCCTTTAGTCTGTCACCCAACCAACATCCCACTGATGTACA
CTCATGAAACGTTTTTGTAGATGCCACATACATGCCCACACAGCCCATTC
GGTTGTGCTTTTCGTAGAATTTTTTCCTCGTTAGGTCATTTCTTCTACCC
TCTTATACCGCTGATGGGGATCAGGTGAAGGTTAGATATTGACGCCTGAA
GAAACGAACTACCCAGTGATGGGATTGAAGACATCTGTGGTTGAGCGTAT
TGGTGAATAAGTCTTCGTGATTGGCTGGAATCTGTGCCACGATTGAAAAC
AATTTATACTAAATAGGTGACTCGTGCAAGACTCGCCTTCAGGCCCGTGT
TGAAATATGTGGGGCTCAATCAAATCTTGAATCTCGCGATGCCGTGTATA
TATGCCTTCAAAACAAAGAGAAGTATAACAAACACCATTCCGTTGACATC
CGATACAAAGAAATCACCCCCTGGACAAAAACGAATACTTGCAAATGGTT
TTCACAATAAAATGAGAAGTGTTCGCCTCAGTTTTAGAATAAACTCGTGT
ATTCGATGTACCCCGGACCATCCACGACTGCTAATAATACTCGAAAAACA
AATATAGAGGGGTGGGTACTTTATTCCATGTGTCCGCTCATTCTGAAATT
CAGGCAAATACTTTCAGTATTTTGTGAAAACTATTTGCAAGTATTCATAT
TTTGTTCAGGGGTGAAAGATTTCAGAACACATTACCATGACGATGCAGGT
ACTGACAGTCCTAACCATTTTTTCCTTACTCTTTCGCCGTCTCGGTTGTT
TCTCCTCTCCCATTTCCAACCATAACCACGACCAACCACCATAACCAACA
ACAAAAAATGAACCGAAAAAATCAGACGGTGACCGAAGCCACCGTATACG
TAGACGTACCCCAGGGCACTCGAGCCAGGGACGTTTCGTGCACGATCGAG
CCTCGACGACTGAGGCTCGAGGTGCGAGGTGCCGCCGCCGCCGTCGCCAT
CGCCACCGCCAGCAGCACTCTCTTTGCGAGCGTCGCCAATGCACCAGGAG
GAGTGAAACCCGAAACAAACTCAAAAGCGGGAGAACGAACAGTAGTCGAC
GGTGATGTCATAATCGACGGAATCCTGCCGAGTGCGATATCCCGGGACGA
CAGTCTGTGGAGCCTCAACGACGGCAACTCCGTAGTAATTTCGTTGGAGA
AGGTGAAACGGTCGTGGTGGGAGAGTGTGGTGGAGGGAGATCCGGAGATT
GATACCACCAAGGTGAGAAAGAAAAACGGGGGGGGGGCGGGGGGAAGTAC
AAGCACAGTAAGTGAGCCCTTTTAGGGCATTCCACTTTAACGCACCTTTC
TTTTACGGCATCTTTTTTTGGCGCGCACGGCTTCATGTTCCTTTTATGCA
CCTTTTGGTTCCAAAGTGCCTTAGAGTGAAACAGTCAACTTAATGTTCCG
AAAGGGGCTAATCTTACTCCCGCCGGGTGCGTGCGGCTTTGAGTATCGGA
CTGGGGCTAATAGGACCTAAAGAAAAATAATTATATATTCTACGCGTGAA
CACCGACCCAACCACAATTCTATACTAATACTGAATCTTCAAGTGGCGCT
CTCGGGGGCTCGGACAGCTCGCTCAATAGTAAGGGTAGAAAAAAGCAAAC
GTAGCAGGCTGGCTGCCCTTCGACTACTGGACTTGGCCCTTATATCATAC
TTGATTTTGAATGCTTCCTGTTTTTCTTTTGTGGAGAGAGAGACGTATTT
GTATTATAGTTATTAAATGCGTGCATCGATAGATGCTACATGTGATATTA
TTATTGTGCAATACGCTAAGGTAGTGATACGGTAGTGGTACTAGTCGTCG
TCGAGATATTGTCGGAAATATTTTCAAGTCTGTACTCCCGTAACTTCCAA
ACGAGGAATCTTCGACAGTTGGTGACGATGAGATATTTCACATCTCGTAC
CGCTCATATACAACATCGATATATCGTAACATACTGGTATATGCGATTTT
CACCCGTCCATCGAGTTCATTCACATATGATCCATATGATCTGCAAATTA
TCCATAGATAAATGGCTGGCCACCGCTGATCCGTGGTGCCTGCCCTATGG
ATCGTGTTGGCACATGTTTTTCCACGGCTAATCCGCTCAAGCCCATTCGT
GTACCGATATTCATCGGTGCTCATCGTGGAATTTTGATGGACAAGTGTGG
TTCTACTGCTTTGATAGTTTTGTGCACATATCCAACGACTAATTAATCGT
ATGAAACGATTTATTATGACCGCTCAAACTTGCTAGAAAACGAGGCCCCT
TCTTTTGTTTCTCCGGTTCTATATATATTGTACGCTTGTTCACCTTGTGT
ATGTTCATGATGCTCTAAGTTATAGCAAATCGATAATGCAACACACACCC
ACACACACACACATATATATTTATATATATATAAATAAATAGCGAGTTGG
CATGGTTGTGCGCACAATAGCTGCAGCAGCAGCAGTGCTCGCTCGATTAC
TGTTGTCCGATTTGTTTTTGCTCCGAAACAACCTCTTAAAAGACACCCAA
AATGTTATAACAGTACTTCAACACACTTGCTTTTTTCTCAAGGGTAGAGA
GCGCTGCAATGCCGCAAAACCTCTTCAAGTTCGCACCGGCTGTGAAGCCC
AAAAAATCCCAGCGATATAGATCACACCTCGGTGCAGATCAAAGGGGGGA
GGGGGGGTGCAAAAATGAAAAAAACTGTTGGATGCGCGGGGGTGCGACAC
GCACCCGGTGCGTACAGGGAAAAACTCACGTGATGTGTGCATGCAAATAC
AACCTCATACAATGTACGCTGTTTACCATGGTAAACACGTTCCATAGATG
AAAAAAGCGTACAGTAGTTATGGGTGCCATCATGAAAAGGGGAAATGCCG
GCGCGCACTGGTTGTCCTGTACTTGAATAACGGTAACACTTATTCCTCTT
TCATGTTTCTGAAGCTCTACCATACGTCAGGGTTTTGATTTTTTTTTCTC
GGAACTACAATCTATATACTCACGTTTTCGATATCCATCGCACTGAAAAT
ATTTCACTTGTTTGATGCATCGCTGGAGTCACCAAATGACGGTGAAAGGC
GAACAGCCTTTGTGCCAGTCCATTACTGACCATGATCCATCAAATAGATC
CGTCATGCAAATACCGGTACCTCCTAAAATATCGTAGATCATCCTTCAAT
AATGTGCCTTTTAAAGACTCACATATTCGTTCTCCGGGCACCCCCCGCGG
CATAAAAACGCACGCACCCCCTCCTTCAAGGTCACGCCCTCGTGCGCTTT
AAAGGGGGTGTCAAAACAAAAATGAAGACAAACGCGTGTAGATCGCGTCG
GGGTGCGAATCACAGGGGAATCTGAACTTGAAGGGTTTTACGGTATATTA
GCGTGCGGCAACAGACTATTCCTCTGCTTTTTCACGTACTTCCTGGGCGC
TGTGGTACTCGTGTCTGTGAATGCCCACTCATGTCTTGAGAAATATGCGA
TCGACTCGCTTCATGCTGATTTGACACGGGAGTCTTGTTTGAATTAATGA
ATTACAGTTATGTTGGTTGTTTCGTAGGTTGTGAAATATCTCCATCTCTC
CCTCACATATTTGAAACCATCAATCAACACACAGGTTGACTCGACGAGCA
AGATAGGAGAGTTCGACGAAGAGACGCAGGGCACCATTCGCAAGATCATG
TTCGATCAGCGACAGAAAATGCTGGGGCTGCCGAGCAGCGATCAGCTTTC
CGCCGAGTCTGTCCTGGAGAAGGCCAAAGGCTTGCCCGGTAGCCCTTTTC
TTCCAGGGGGAGTAATGTTCGATGCCGGCGACCGTGGCAACGTTCGCAGC
AGCAGTAGCACTAGACCCATCGAATTTCCCCCCGCAGAAAAGGGTGGGTT
TACTGTAGATTTTGAACCAGGTAGCGCGGCTATTCCTTTGGATGACTCGT
GACGATGACATGTTACATTGCGAGGTAGGGAGGGATATTTTACTGAAGAT
TATGCCCGGTTATTGAAATGAAATAATAGTTGGCAAATGTATTTTCCCCA
TGAATGTGTTTTCCTTTTTTCCTTGAAAGGAGGGGAGGAAAACTTTGCCC
AACACTTACCCCGAAACCGCGTTC
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Coding sequence (CDS) from alignment at H-paniculata_contig14398:52..5375-

>mRNA_H-paniculata_contig14398.2642.1 ID=mRNA_H-paniculata_contig14398.2642.1|Name=mRNA_H-paniculata_contig14398.2642.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3036bp|location=Sequence derived from alignment at H-paniculata_contig14398:52..5375- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGACAGATAGGAGATTCGACGATGTGCTCATGACAATGGCCGGCCA
GGCCGGGTCGCTGGAGGTCTTGCTACGCATCTTCTTCTCCTTCTTGCACC
GACAGACCGACCTCTACGTAACGTACGATCCCAGGAAGACTAGCCGAGCA
GGGATGGGCTTCCCCCCTGGTACAGCCGAGAAGCTTCTGCTTAAGGCCTT
CAGAGCCCTCCCCTTCAAACCGTACACCGACAACAACAGCACTTTGAGTA
GTAGCAGCAGTAGTAAAAGCAATAGCAGCGGCAGTAGCAGCAGCAAGTCG
AGAATAACGACAAACAAGGTCTCCACGGCCGATGTTGTGAAGGGAGGTTC
AACAATTCGGCGCAGTCCCAACACGCTTCCAGCCAAGGCGTGCTACTCTC
GAGGGGAAGCAATGTCGACAGATAGGAGATTCGACGATGTGCTCATGACA
ATGGCCGGCCAGGCCGGGTCGCTGGAGGTCTTGCTACGCATCTTCTTCTC
CTTCTTGCACCGACAGACCGACCTCTACGTAACGTACGATCCCAGGAAGA
CTAGCCGAGCAGGGATGGGCTTCCCCCCTGGTACAGCCGAGAAGCTTCTG
CTTAAGGCCTTCAGAGCCCTCCCCTTCAAACCGTACACCGACAACAACAG
CACTTTGAGTAGTAGCAGCAGTAGTAAAAGCAATAGCAGCGGCAGTAGCA
GCAGCAAGTCGAGAATAACGACAAACAAGGTCTCCACGGCCGATGTTGTG
AAGGGAGGTTCAACAATTCGGCGCAGTCCCAACACGCTTCCAGCCAAGGC
GTGCTACTCTCGAGGGGAAGCAACAACAACAACAACAAAAACAAAAAAAA
CAACAGCACCATCACCACCACCACCACCAGCAGCAGAAGCTACGGGAAAC
CCACCACTAGCGTCACCAGCATCACCAGCACCGCCAGTAACAGAAAACAG
GGCCGTAGACAAGAAGAAAAATGACAGACCCTCGGCATCGCTGGACGTAG
CAACCCATACAAAATCTGGTACAACCATCATGGCTCCATCTTTTTCGATA
GCAACGGCACCTGCACCGGCCATGGACCCGGCGCCGACGGGGGGGACGCA
GGACGGGGAGACTGCAGGAAAGACGGACGATAATGCGGGGACAATACGAG
TGCGCTACACGGAAGATGGGAAGCAGATCCCGATCGGTAATGGCGGGGTG
ACTCCACGCTACTACTGGACGCAAACAACAACAACAACAAAAACAAAAAA
AACAACAGCACCATCACCACCACCACCACCAGCAGCAGAAGCTACGGGAA
ACCCACCACTAGCGTCACCAGCATCACCAGCACCGCCAGTAACAGAAAAC
AGGGCCGTAGACAAGAAGAAAAATGACAGACCCTCGGCATCGCTGGACGT
AGCAACCCATACAAAATCTGGTACAACCATCATGGCTCCATCTTTTTCGA
TAGCAACGGCACCTGCACCGGCCATGGACCCGGCGCCGACGGGGGGGACG
CAGGACGGGGAGACTGCAGGAAAGACGGACGATAATGCGGGGACAATACG
AGTGCGCTACACGGAAGATGGGAAGCAGATCCCGATCGGTAATGGCGGGG
TGACTCCACGCTACTACTGGACGCAAACGGTGACCGAAGCCACCGTATAC
GTAGACGTACCCCAGGGCACTCGAGCCAGGGACGTTTCGTGCACGATCGA
GCCTCGACGACTGAGGCTCGAGGTGCGAGGTGCCGCCGCCGCCGTCGCCA
TCGCCACCGCCAGCAGCACTCTCTTTGCGAGCGTCGCCAATGCACCAGGA
GGAGTGAAACCCGAAACAAACTCAAAAGCGGGAGAACGAACAGTAGTCGA
CGGTGATGTCATAATCGACGGAATCCTGCCGAGTGCGATATCCCGGGACG
ACAGTCTGTGGAGCCTCAACGACGGCAACTCCGTAGTAATTTCGTTGGAG
AAGGTGAAACGGTCGTGGTGGGAGAGTGTGGTGGAGGGAGATCCGGAGAT
TGATACCACCAAGACGGTGACCGAAGCCACCGTATACGTAGACGTACCCC
AGGGCACTCGAGCCAGGGACGTTTCGTGCACGATCGAGCCTCGACGACTG
AGGCTCGAGGTGCGAGGTGCCGCCGCCGCCGTCGCCATCGCCACCGCCAG
CAGCACTCTCTTTGCGAGCGTCGCCAATGCACCAGGAGGAGTGAAACCCG
AAACAAACTCAAAAGCGGGAGAACGAACAGTAGTCGACGGTGATGTCATA
ATCGACGGAATCCTGCCGAGTGCGATATCCCGGGACGACAGTCTGTGGAG
CCTCAACGACGGCAACTCCGTAGTAATTTCGTTGGAGAAGGTGAAACGGT
CGTGGTGGGAGAGTGTGGTGGAGGGAGATCCGGAGATTGATACCACCAAG
GTTGACTCGACGAGCAAGATAGGAGAGTTCGACGAAGAGACGCAGGGCAC
CATTCGCAAGATCATGTTCGATCAGCGACAGAAAATGCTGGGGCTGCCGA
GCAGCGATCAGCTTTCCGCCGAGTCTGTCCTGGAGAAGGCCAAAGGCTTG
CCCGGTAGCCCTTTTCTTCCAGGGGGAGTAATGTTCGATGCCGGCGACCG
TGGCAACGTTCGCAGCAGCAGTAGCACTAGACCCATCGAATTTCCCCCCG
CAGAAAAGGGTGGGTTTACTGTAGATTTTGAACCAGGTAGCGCGGCTATT
CCTTTGGATGACTCGTGAGTTGACTCGACGAGCAAGATAGGAGAGTTCGA
CGAAGAGACGCAGGGCACCATTCGCAAGATCATGTTCGATCAGCGACAGA
AAATGCTGGGGCTGCCGAGCAGCGATCAGCTTTCCGCCGAGTCTGTCCTG
GAGAAGGCCAAAGGCTTGCCCGGTAGCCCTTTTCTTCCAGGGGGAGTAAT
GTTCGATGCCGGCGACCGTGGCAACGTTCGCAGCAGCAGTAGCACTAGAC
CCATCGAATTTCCCCCCGCAGAAAAGGGTGGGTTTACTGTAGATTTTGAA
CCAGGTAGCGCGGCTATTCCTTTGGATGACTCGTGA
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