mRNA_H-paniculata_contig14396.2641.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14396.2641.1
Unique NamemRNA_H-paniculata_contig14396.2641.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14396.2641.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14396contigH-paniculata_contig14396:1595..2142 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size548
Cds size351
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14396.2641.1prot_H-paniculata_contig14396.2641.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14396 1688..2038 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929145.402115-UTR-H-paniculata_contig14396:1594..16871622929145.402115-UTR-H-paniculata_contig14396:1594..1687Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14396 1595..1687 +
1691480748.8082497-UTR-H-paniculata_contig14396:1594..16871691480748.8082497-UTR-H-paniculata_contig14396:1594..1687Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14396 1595..1687 +
1622929145.4391644-UTR-H-paniculata_contig14396:2038..21421622929145.4391644-UTR-H-paniculata_contig14396:2038..2142Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14396 2039..2142 +
1691480748.824728-UTR-H-paniculata_contig14396:2038..21421691480748.824728-UTR-H-paniculata_contig14396:2038..2142Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14396 2039..2142 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929145.4195025-CDS-H-paniculata_contig14396:1687..20381622929145.4195025-CDS-H-paniculata_contig14396:1687..2038Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14396 1688..2038 +
1691480748.8169053-CDS-H-paniculata_contig14396:1687..20381691480748.8169053-CDS-H-paniculata_contig14396:1687..2038Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14396 1688..2038 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14396.2641.1

>prot_H-paniculata_contig14396.2641.1 ID=prot_H-paniculata_contig14396.2641.1|Name=mRNA_H-paniculata_contig14396.2641.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=117bp
MAITTTYGSRSRITRILSVPVEWRTFQTNSLKPEKPSDTKMSVVFPRAVL
SQYLRANHFCRPGLKKTSSAVAITVTNVLTTSTSMWVNTPTAIWSGSGSN
WSNYVPQMVAIACIQN*
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mRNA from alignment at H-paniculata_contig14396:1595..2142+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14396.2641.1 ID=mRNA_H-paniculata_contig14396.2641.1|Name=mRNA_H-paniculata_contig14396.2641.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=548bp|location=Sequence derived from alignment at H-paniculata_contig14396:1595..2142+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCGCTAATGAGCCTATAACTTTGACGGAACTGCCATCCTTTTGGGAGGC
GGTGGCCCCAATACCCGCAGTCGAATATGGCAGAAGTTGTAGCATGGCTA
TTACTACCACATACGGCAGCAGATCCCGGATCACCCGTATCCTGTCGGTG
CCCGTTGAATGGCGCACTTTCCAAACAAACTCGCTGAAACCAGAAAAGCC
CTCTGACACCAAGATGTCTGTCGTGTTTCCCCGGGCTGTCCTTTCCCAGT
ACCTCCGGGCCAACCACTTCTGTAGACCAGGGCTTAAAAAAACAAGCAGC
GCCGTCGCGATCACGGTCACCAACGTATTGACAACCTCGACCTCCATGTG
GGTTAACACGCCGACCGCCATCTGGTCTGGCTCGGGGTCCAATTGGTCCA
ATTACGTTCCTCAAATGGTTGCAATAGCCTGTATTCAAAACTGACTCTCT
ATGATCTCAGCGGGAATGCGGTTGCCCGTTCTCAGGCTGAGACACTCCCC
AGTCCTGCTACTACTACTGCGCAGTCTTGTTCACCTCGCTCTCATGTC
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Coding sequence (CDS) from alignment at H-paniculata_contig14396:1595..2142+

>mRNA_H-paniculata_contig14396.2641.1 ID=mRNA_H-paniculata_contig14396.2641.1|Name=mRNA_H-paniculata_contig14396.2641.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at H-paniculata_contig14396:1595..2142+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTATTACTACCACATACGGCAGCAGATCCCGGATCACCCGTATCCT
GTCGGTGCCCGTTGAATGGCGCACTTTCCAAACAAACTCGCTGAAACCAG
AAAAGCCCTCTGACACCAAGATGTCTGTCGTGTTTCCCCGGGCTGTCCTT
TCCCAGTACCTCCGGGCCAACCACTTCTGTAGACCAGGGCTTAAAAAAAC
AAGCAGCGCCGTCGCGATCACGGTCACCAACGTATTGACAACCTCGACCT
CCATGTGGGTTAACACGCCGACCGCCATCTGGTCTGGCTCGGGGTCCAAT
TGGTCCAATTACGTTCCTCAAATGGTTGCAATAGCCTGTATTCAAAACTG
AATGGCTATTACTACCACATACGGCAGCAGATCCCGGATCACCCGTATCC
TGTCGGTGCCCGTTGAATGGCGCACTTTCCAAACAAACTCGCTGAAACCA
GAAAAGCCCTCTGACACCAAGATGTCTGTCGTGTTTCCCCGGGCTGTCCT
TTCCCAGTACCTCCGGGCCAACCACTTCTGTAGACCAGGGCTTAAAAAAA
CAAGCAGCGCCGTCGCGATCACGGTCACCAACGTATTGACAACCTCGACC
TCCATGTGGGTTAACACGCCGACCGCCATCTGGTCTGGCTCGGGGTCCAA
TTGGTCCAATTACGTTCCTCAAATGGTTGCAATAGCCTGTATTCAAAACT
GA
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