mRNA_H-paniculata_contig14393.2639.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14393.2639.1
Unique NamemRNA_H-paniculata_contig14393.2639.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig14393.2639.1 vs. uniprot
Match: A0A6H5K7N2_9PHAE (LysM domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7N2_9PHAE)

HSP 1 Score: 204 bits (519), Expect = 6.160e-58
Identity = 98/117 (83.76%), Postives = 107/117 (91.45%), Query Frame = 1 
Query:    1 EKVLARKDHKEAAVRRTVMALLPELAAFFPAGSGELFEPAMWFLIHTLRKGQKKDRGLAYLSLARLGLAVGPGRWLGAPTLWHSVREVVKEGLAEDRKDFCPQSLACLEMIVIVGSA 351
            E+VLAR+DHKE AVRRTVMALLPEL AFFP G+GE  EPA+WFLIHTLR+GQ+ DRGLAYLSLARLGLA G G W GAP+LWHSVREVVKEGLAEDR+DFCPQSLACLEMIVI+GSA
Sbjct:  406 ERVLARRDHKEVAVRRTVMALLPELVAFFPGGAGEFVEPAVWFLIHTLRQGQRSDRGLAYLSLARLGLAAGTGVWRGAPSLWHSVREVVKEGLAEDRRDFCPQSLACLEMIVIIGSA 522
[Close]
BLAST of mRNA_H-paniculata_contig14393.2639.1 vs. uniprot
Match: D7G554_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G554_ECTSI)

HSP 1 Score: 194 bits (493), Expect = 2.490e-56
Identity = 92/112 (82.14%), Postives = 102/112 (91.07%), Query Frame = 1 
Query:    1 EKVLARKDHKEAAVRRTVMALLPELAAFFPAGSGELFEPAMWFLIHTLRKGQKKDRGLAYLSLARLGLAVGPGRWLGAPTLWHSVREVVKEGLAEDRKDFCPQSLACLEMIV 336
            E+VLAR+DHKE AVRRTVMALLPEL AFFP G+GE  EPA+WFLIHTLR+GQ+ DRGLAYLSLARLGLA G G W GAPTLWHSVREVVKEGLAEDR+DFCPQSLACLE+++
Sbjct:  454 ERVLARRDHKEVAVRRTVMALLPELVAFFPGGAGEFVEPAVWFLIHTLRQGQRSDRGLAYLSLARLGLAAGTGVWRGAPTLWHSVREVVKEGLAEDRRDFCPQSLACLEVLL 565
[Close]
BLAST of mRNA_H-paniculata_contig14393.2639.1 vs. uniprot
Match: L8GQF7_ACACA (Non-specific serine/threonine protein kinase n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GQF7_ACACA)

HSP 1 Score: 62.4 bits (150), Expect = 2.440e-8
Identity = 40/111 (36.04%), Postives = 61/111 (54.95%), Query Frame = 1 
Query:    7 VLARKDHKEAAVRRTVMALLPELAAFFPAG-SGELFEPAMWFLIHTLRK-GQKKDRGLAYLSLARLGLAVGPGRWLGAPTLWHSVREVVKEGLAEDRKDFCPQSLACLEMI 333
            +L  +DHKE  +RRTV+ LLP LAAF P   + +  +  M  L+  L+K G+ ++R  A+L L ++  +VGPG     P L      ++K  L    + +C QSL C  M+
Sbjct:  285 ILKYRDHKERIIRRTVINLLPRLAAFAPEEFAAKYLDVCMQALLGVLKKDGKSEERASAFLVLGQIAHSVGPGIEPYRPQL----TALIKNALDVRNRGYCLQSLTCWSMV 391
[Close]
BLAST of mRNA_H-paniculata_contig14393.2639.1 vs. uniprot
Match: L8GIV8_ACACA (Serine/threonine-protein kinase TOR n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GIV8_ACACA)

HSP 1 Score: 55.1 bits (131), Expect = 8.310e-6
Identity = 43/122 (35.25%), Postives = 65/122 (53.28%), Query Frame = 1 
Query:    7 VLARKDHKEAAVRRTVMALLPELAAFFPAGSGELF-----EPAMWFLIHTLRK-GQKKDRGLAYLSLARLGLAVGPGRWLGAPTLWHSVREVVKEGLAEDRKDFCPQSLACLEMIV-IVGSA 351
            +L  KDHKE  ++RTV++LLP LAAF    + E F        M  L+  L+K G+ ++R  A+++L  +  +VG       P L   +  ++K  L    K +C QSL C+ MI  +VG A
Sbjct:  288 ILKHKDHKEKIIKRTVISLLPRLAAF----ASEEFVLNYLNVCMQTLLAVLKKDGKNEERASAFIALGEIAHSVGTNI---KPYLEQLIG-ILKSALNVKNKSYCLQSLTCVSMISPVVGVA 401
[Close]
BLAST of mRNA_H-paniculata_contig14393.2639.1 vs. uniprot
Match: A0A5D6YAB1_9STRA (Non-specific serine/threonine protein kinase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YAB1_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 2.870e-5
Identity = 39/111 (35.14%), Postives = 56/111 (50.45%), Query Frame = 1 
Query:    7 VLARKDHKEAAVRRTVMALLPELAAFFPAGSGELFEPAMWFLIHTLRK----GQKKDRGLAYLSLARLGLAVGPGRWLGAPTLWHSVREVVKEGLAEDR-KDFCPQSLACL 324
            VL  KD K+  V RTV ALLP+LA F        + P    L H L++        +RG+ +L+L RL LAVGP      P +   V++ +     + + K FC +SL C+
Sbjct:  313 VLLYKDAKDKLVNRTVCALLPQLAEFCADAFVRHYLPGA--LAHLLKRLTTHASAAERGIVFLALGRLALAVGPHVLPQLPAIVKLVKDALPTHARKKKNKLFCVESLTCV 421
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14393.2639.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5K7N2_9PHAE6.160e-5883.76LysM domain-containing protein (Fragment) n=1 Tax=... [more]
D7G554_ECTSI2.490e-5682.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
L8GQF7_ACACA2.440e-836.04Non-specific serine/threonine protein kinase n=1 T... [more]
L8GIV8_ACACA8.310e-635.25Serine/threonine-protein kinase TOR n=1 Tax=Acanth... [more]
A0A5D6YAB1_9STRA2.870e-535.14Non-specific serine/threonine protein kinase n=1 T... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14393contigH-paniculata_contig14393:3248..6183 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score197.2
Seed ortholog evalue5.7e-48
Seed eggNOG ortholog2880.D7G554
KEGG koko:K06642,ko:K07203,ko:K08873
KEGG Pathwayko01521,ko01522,ko03015,ko03450,ko04012,ko04066,ko04072,ko04110,ko04136,ko04138,ko04139,ko04140,ko04150,ko04151,ko04152,ko04211,ko04212,ko04213,ko04218,ko04371,ko04630,ko04659,ko04714,ko04910,ko04919,ko04920,ko04930,ko04931,ko05165,ko05167,ko05200,ko05205,ko05206,ko05210,ko05212,ko05214,ko05215,ko05221,ko05224,ko05225,ko05226,ko05230,ko05231,map01521,map01522,map03015,map03450,map04012,map04066,map04072,map04110,map04136,map04138,map04139,map04140,map04150,map04151,map04152,map04211,map04212,map04213,map04218,map04371,map04630,map04659,map04714,map04910,map04919,map04920,map04930,map04931,map05165,map05167,map05200,map05205,map05206,map05210,map05212,map05214,map05215,map05221,map05224,map05225,map05226,map05230,map05231
KEGG ModuleM00297
Hectar predicted targeting categoryother localisation
EggNOG free text desc.phosphatidylinositol kinase activity
EggNOG OGsCOG5032@1,KOG0891@2759
EC2.7.11.1
COG Functional cat.BDLTU
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03019,ko03032,ko03400,ko04131
Exons3
Model size478
Cds size474
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14393.2639.1prot_H-paniculata_contig14393.2639.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14393 3250..6183 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929145.2713633-CDS-H-paniculata_contig14393:3249..33961622929145.2713633-CDS-H-paniculata_contig14393:3249..3396Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14393 3250..3396 -
1691480748.7543037-CDS-H-paniculata_contig14393:3249..33961691480748.7543037-CDS-H-paniculata_contig14393:3249..3396Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14393 3250..3396 -
1622929145.2881844-CDS-H-paniculata_contig14393:5383..55601622929145.2881844-CDS-H-paniculata_contig14393:5383..5560Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14393 5384..5560 -
1691480748.7714179-CDS-H-paniculata_contig14393:5383..55601691480748.7714179-CDS-H-paniculata_contig14393:5383..5560Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14393 5384..5560 -
1622929145.301262-CDS-H-paniculata_contig14393:6033..61831622929145.301262-CDS-H-paniculata_contig14393:6033..6183Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14393 6034..6183 -
1691480748.7826006-CDS-H-paniculata_contig14393:6033..61831691480748.7826006-CDS-H-paniculata_contig14393:6033..6183Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14393 6034..6183 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14393.2639.1

>prot_H-paniculata_contig14393.2639.1 ID=prot_H-paniculata_contig14393.2639.1|Name=mRNA_H-paniculata_contig14393.2639.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=158bp
EKVLARKDHKEAAVRRTVMALLPELAAFFPAGSGELFEPAMWFLIHTLRK
GQKKDRGLAYLSLARLGLAVGPGRWLGAPTLWHSVREVVKEGLAEDRKDF
CPQSLACLEMIVIVGSASSNASEPPPPAPPSVLPRMSSVASSVPPSSGRG
SPAPSSAP
back to top

mRNA from alignment at H-paniculata_contig14393:3248..6183-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14393.2639.1 ID=mRNA_H-paniculata_contig14393.2639.1|Name=mRNA_H-paniculata_contig14393.2639.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2936bp|location=Sequence derived from alignment at H-paniculata_contig14393:3248..6183- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGAAGGTTTTGGCGAGAAAGGACCACAAGGAGGCCGCCGTGCGACGTAC
GGTGATGGCCTTGTTACCCGAGCTTGCGGCATTTTTTCCGGCTGGCTCCG
GGGAGCTGTTCGAGCCAGCAATGTGGTTTCTTATCCACACTCTGCGCAAG
GTTCGTCTCTCTTGGTTTTTTTTTTTGTGTTTTTTTCAGTGTTTGTCTGC
TGTTATTACTACTGCTGCTGCTGCTGCTGCTCCTATGATTTATTGGTCTG
GCTTGTTTGATTTCGGCCACAAAATCGCCACGTGTTTTTTACTACTTCCT
TGAAGCCCGCCAGTCATATGGAGCACTTTTTCTCTTTTGTTTTAACCGGT
TTGTATTTCGTTTTTTCTTCTGCCTGCCTGTTTGCTTCCTTGCTTCCTTG
CTTATTTGTTTTTTGTTCTCTTGTATGTCCTTTTGTTTCGTATGTCTGTC
TATTTGTTTGTCTGTCTATATGTTTGTCTGTCTATATGTTTGTCTGTCTA
TTTGTTTGTCTGTCTATTTGTTTGTCTGTCTATTCATTTTTTTCTTTCTC
CTTGTGTGTTTCTCTCCCCCCCCCCCCTCCCTCTCTACGCATCCCGGTTT
ACTTAATCTTTTTTCTGTCGCAGGGCCAAAAGAAGGATCGGGGTCTGGCA
TACCTTTCCCTGGCCAGGTTGGGCCTCGCGGTGGGGCCGGGGCGGTGGCT
CGGCGCTCCCACCCTGTGGCACAGCGTACGCGAGGTGGTTAAGGAGGGTT
TAGCGGAGGACCGAAAGGACTTCTGCCCCCAGTCTCTGGCGTGCCTCGAG
GTGAGAGGAAGACACACCTTGTCAACACGCGATAATGGAAAACTTGTGGA
GCAGTGTGATTTTGTACTACCATGAGCATGACAGCCATTTTGAGTTCGTC
TATCGGTGGTAGATCGATGAGACGATCACGTACTCATGTATGTATTGTCA
TAGTACTGGTGTTGAGCTGCAACACCACCTTCATTAGACGTTCTTCTCAT
ATCCGATGTTTCAATTCCTCAGACCGTTTGTTAACGAGCGAGCATGGAAG
GATTGAAATGCTGTAGCTCTTTGTGGCTTAGTGATGGGTGTCGTGCGCGT
GACTAGTGTTGTTATTTTAGAATGAATTTGGATTCAGGCTATCACAACCA
TGATAACGAGAACCCATCCACCCTCCCCTTTTGGATGGGGAGCAGACGAA
TTGGTCCATGTTATGCAGCTGGCTGACTTCAATCTGCAGTTGTATACATT
GCAGCAAATTTAAGTCAATTAAGGACTAAATAATTTCGGTTAAAAATTGT
GTGCAGTGGTAAGTCGTCTTCGCCTTCATGAGTTATTGTGTCATAGTTTA
TCCTTCTTTTTTTCCGTGTTGCACGTGGGAAATTTTTATAAACACTCTCT
CGCGCGCACACATGACGCGTTGGGACACATGCCATGAGACCTGGTCTATT
TCTCCGCGCATTTTCTCCGCGTGTTTTGTTTATTCTCCGAAGTAGCGTTT
TACACCCATGTGTCCTAACCTTAGACGTTACACATGATGGTTGGACCTAC
AATCAAATCACGTCGTGTTCGCTTGAAAAGCCGCTCCCCGCCCCACCTCC
CTTCTTACCGCCCCCCTCTCTTATTGTACTCATCCGATTATCTTCATAAG
TACAAACCCCCTAAATTCACTCCATTCGTTCATTCCCGATCCTAGTTCCT
CTCTTTGTCGTAGGTGGTGATATCTGGAACTATGGCTTTGTCCATAGGTG
TGAGATACAAGCTCCAGAGGATCAACGCGACGAGGATATAAATATATTAA
AAAGAGTTTCCTCTCTAGATTTACAGACAATTCAACCGTTCTTGCTCTTG
TTTTATGTTTTTTTTCACCCAGGGTTTGAAATCTGCTCATGAGTATTTCT
AGTCAGGCTGATGAGCTAAATGTAAATAATAACCTTGAGAACCTTGAGCA
TGAAATCCCTTTTGTAACCTACTATGTAAAAAGGTGTTGGAGGCGTATCA
TATGTATCAACGTCCCCCCATCCCCCTTCCCCGCCCTTGCATTTGAGAAT
TATGACTAGTGTACAGTCATGATCCATGATTATGATTATGAGCCAATACA
AAGAAGTTATTCCCTCCGATTTGTTTATACTCTAATGGTATTGATAAGTA
TATACACAGCTGCATAACCTCAACAGGGTAAAAGGAAGTTATTATTCCAT
ATCATTAGAGCTACTAACTGTGGCAATCGACTTGTGAATGACGCGTGAAA
TGAGTATGACATCTCATTCATTTAAGGTGTTCATATGTAAGACGTCTCAC
GTCTACGTCCTCGTGAGAGTAGTATGTAGCCCATTTAACTTTACCCACCC
CTCTCTCCCCCCACCGTGGCGGGAATTGAGGCAGATGGGATAGGTGAACA
TGTTTTCGAGCCACATTTGGCAACGTAGGAAAGAGCGATTGACCGTGAGA
AATCGCTCTGATAGGCTCACAGCTCCGTCCTCCCGAGGATGCGTGGTCAA
TGGTCTCACAGCTACGGCAGATTAAACATGAGTAAACACACCTCTCATAG
ATTTGGTTTTGCTGATGAGTGCGCACAACTACAGATTGAAGCTAGCTGCA
AAACATTAACATGGGTACAATGGAATCATGATATGAGGTTCAAAATTATC
GCTCAACTGACTTGTTGCAGGTTGATTTTACTACGCAAATGAAAGTTTCA
GTTAGCAAAATGGAGGGCTGTTTTAATTTTCGCGAATACCCTCCCTGCCC
CTTCCTCCCTCGCCATCCCGTTACTCCACCGCAAAAGATGATCGTCATCG
TGGGATCGGCGTCATCGAACGCGAGTGAACCGCCGCCTCCAGCACCGCCA
TCGGTGCTCCCACGAATGTCTTCTGTGGCATCTTCGGTCCCGCCAAGCTC
AGGGCGTGGCTCGCCCGCGCCGTCGTCAGCGCCGCC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig14393:3248..6183-

>mRNA_H-paniculata_contig14393.2639.1 ID=mRNA_H-paniculata_contig14393.2639.1|Name=mRNA_H-paniculata_contig14393.2639.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=948bp|location=Sequence derived from alignment at H-paniculata_contig14393:3248..6183- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGAAGGTTTTGGCGAGAAAGGACCACAAGGAGGCCGCCGTGCGACGTAC
GGTGATGGCCTTGTTACCCGAGCTTGCGGCATTTTTTCCGGCTGGCTCCG
GGGAGCTGTTCGAGCCAGCAATGTGGTTTCTTATCCACACTCTGCGCAAG
GAGAAGGTTTTGGCGAGAAAGGACCACAAGGAGGCCGCCGTGCGACGTAC
GGTGATGGCCTTGTTACCCGAGCTTGCGGCATTTTTTCCGGCTGGCTCCG
GGGAGCTGTTCGAGCCAGCAATGTGGTTTCTTATCCACACTCTGCGCAAG
GGCCAAAAGAAGGATCGGGGTCTGGCATACCTTTCCCTGGCCAGGTTGGG
CCTCGCGGTGGGGCCGGGGCGGTGGCTCGGCGCTCCCACCCTGTGGCACA
GCGTACGCGAGGTGGTTAAGGAGGGTTTAGCGGAGGACCGAAAGGACTTC
TGCCCCCAGTCTCTGGCGTGCCTCGAGGGCCAAAAGAAGGATCGGGGTCT
GGCATACCTTTCCCTGGCCAGGTTGGGCCTCGCGGTGGGGCCGGGGCGGT
GGCTCGGCGCTCCCACCCTGTGGCACAGCGTACGCGAGGTGGTTAAGGAG
GGTTTAGCGGAGGACCGAAAGGACTTCTGCCCCCAGTCTCTGGCGTGCCT
CGAGATGATCGTCATCGTGGGATCGGCGTCATCGAACGCGAGTGAACCGC
CGCCTCCAGCACCGCCATCGGTGCTCCCACGAATGTCTTCTGTGGCATCT
TCGGTCCCGCCAAGCTCAGGGCGTGGCTCGCCCGCGCCGTCGTCAGCGCC
GATGATCGTCATCGTGGGATCGGCGTCATCGAACGCGAGTGAACCGCCGC
CTCCAGCACCGCCATCGGTGCTCCCACGAATGTCTTCTGTGGCATCTTCG
GTCCCGCCAAGCTCAGGGCGTGGCTCGCCCGCGCCGTCGTCAGCGCCG
back to top