mRNA_H-paniculata_contig14393.2638.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14393.2638.1
Unique NamemRNA_H-paniculata_contig14393.2638.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14393.2638.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14393contigH-paniculata_contig14393:1821..3210 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size477
Cds size474
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929145.2062504-CDS-H-paniculata_contig14393:1822..22051622929145.2062504-CDS-H-paniculata_contig14393:1822..2205Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14393 1823..2205 -
1691480748.7175431-CDS-H-paniculata_contig14393:1822..22051691480748.7175431-CDS-H-paniculata_contig14393:1822..2205Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14393 1823..2205 -
1622929145.224-CDS-H-paniculata_contig14393:3119..32101622929145.224-CDS-H-paniculata_contig14393:3119..3210Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14393 3120..3210 -
1691480748.7318625-CDS-H-paniculata_contig14393:3119..32101691480748.7318625-CDS-H-paniculata_contig14393:3119..3210Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14393 3120..3210 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14393.2638.1prot_H-paniculata_contig14393.2638.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14393 1823..3210 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14393.2638.1

>prot_H-paniculata_contig14393.2638.1 ID=prot_H-paniculata_contig14393.2638.1|Name=mRNA_H-paniculata_contig14393.2638.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=158bp
VAGGADRLEPAAATAGAAVVGVVGGPDGVEGPPTSPMSHTAEQPAPTSTD
PPNLRTAVPITSTTTTTAASNSATSTPPPPPPSLSAATSQDDFMSSSTSV
DYHHSRQTSQDQLPVAAPVALPTVFASITASATAGKSSDKAAAAAAAAAV
EVQMAATG
back to top

mRNA from alignment at H-paniculata_contig14393:1821..3210-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14393.2638.1 ID=mRNA_H-paniculata_contig14393.2638.1|Name=mRNA_H-paniculata_contig14393.2638.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1390bp|location=Sequence derived from alignment at H-paniculata_contig14393:1821..3210- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTGCCGGTGGAGCAGATCGATTAGAACCGGCCGCTGCGACAGCAGGGGC
GGCCGTTGTCGGCGTTGTTGGGGGGCCGGATGGTGTAGAAGGTTAGTACC
GTGGATATATTTTTGTGTCATGCGGTGAAGCAGCGCGCCTCGGGCGGCGG
CGGTGGTGGTGGAAGTGGTGGTGTAGTGATGGATTTTGAACGTTTTTTCA
ATGTTGTGCTCAAGTAAGTTATGAAAAACGAACCTTCATGTGAGCGTAGC
GAGCCACCGCGAGACGTAGCTAGTCCGTGGGTCGAGAACAAGCCGGTATG
AACGGCAAGGGCTAGCGTAGGCAGCTGTCGTCACACTCTAATAGTGGTGG
AAGCATAAAACCTTCAGGAATATACCTCAAGGGGTAATATTCCAACTCTT
GCAGCATTGCAAACTTACTTCGCAGTGTTGTTTCAGCCTTGAGGTCATTT
ATATATATACATGATGATGGTAAGCGGCATTGATTTGTGATTTGACTCCT
TTTGTTGTCGTTGATGACGCGGGGTAGCTTAGTCGAGATGGATCTTTGGT
TATTTTTATCTGTTTGTTTTTACCTCCGTGCTGCCACCATGACAGGGCGT
AATCTCTCGGATTTCTCCTGTATACGTGGAGGACACTGGTCATAAATGTA
CCTCGCATATTAGTATGTGTTGAGAATCCCTCTCGCCCCCCCCCGTCTGC
CCGTCCTCCAAGTGGTGTACTCTCACAACACGGATATATGAAATGGTGTG
TACGTCTCCTGCATCATCCCGAAAGGCCTTCGGTAGTACTCACCAATCCG
AAGCCAATTCTTGTTGTATACATGAAACTGTATTTTTTACATGAACCCTA
ACTCTTTTTATATCAACCCGAATTGTTCACATCAACTTTACCTGTTTGTG
TATCAACCTTTCTTCATACCCCATTTCTTTTTTACTCCATCGTTGCCCCT
GACATACATTTTTGTGTCCACAACAAACCTAACAACATTAAATGAATCAA
AACAGGGCCTCCAACGTCGCCAATGTCACACACGGCGGAACAGCCAGCAC
CGACGTCGACCGACCCTCCAAACCTCAGAACCGCGGTGCCGATAACATCA
ACAACGACGACGACGGCCGCTAGTAACTCCGCGACGTCTACGCCGCCGCC
CCCACCGCCGTCATTGTCGGCGGCCACCTCCCAAGACGATTTCATGTCCT
CATCCACATCTGTGGACTATCACCACTCGCGACAAACATCGCAAGATCAA
CTACCTGTGGCAGCGCCGGTGGCCCTTCCCACCGTATTCGCTTCCATCAC
CGCAAGTGCTACTGCAGGGAAGAGCTCGGACAAAGCGGCGGCGGCGGCGG
CGGCGGCGGCGGTGGAGGTTCAAATGGCAGCGACTGGCCC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig14393:1821..3210-

>mRNA_H-paniculata_contig14393.2638.1 ID=mRNA_H-paniculata_contig14393.2638.1|Name=mRNA_H-paniculata_contig14393.2638.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=948bp|location=Sequence derived from alignment at H-paniculata_contig14393:1821..3210- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTGCCGGTGGAGCAGATCGATTAGAACCGGCCGCTGCGACAGCAGGGGC
GGCCGTTGTCGGCGTTGTTGGGGGGCCGGATGGTGTAGAAGGTTGCCGGT
GGAGCAGATCGATTAGAACCGGCCGCTGCGACAGCAGGGGCGGCCGTTGT
CGGCGTTGTTGGGGGGCCGGATGGTGTAGAAGGGCCTCCAACGTCGCCAA
TGTCACACACGGCGGAACAGCCAGCACCGACGTCGACCGACCCTCCAAAC
CTCAGAACCGCGGTGCCGATAACATCAACAACGACGACGACGGCCGCTAG
TAACTCCGCGACGTCTACGCCGCCGCCCCCACCGCCGTCATTGTCGGCGG
CCACCTCCCAAGACGATTTCATGTCCTCATCCACATCTGTGGACTATCAC
CACTCGCGACAAACATCGCAAGATCAACTACCTGTGGCAGCGCCGGTGGC
CCTTCCCACCGTATTCGCTTCCATCACCGCAAGTGCTACTGCAGGGAAGA
GCTCGGACAAAGCGGCGGCGGCGGCGGCGGCGGCGGCGGTGGAGGTTCAA
ATGGCAGCGACTGGCGGCCTCCAACGTCGCCAATGTCACACACGGCGGAA
CAGCCAGCACCGACGTCGACCGACCCTCCAAACCTCAGAACCGCGGTGCC
GATAACATCAACAACGACGACGACGGCCGCTAGTAACTCCGCGACGTCTA
CGCCGCCGCCCCCACCGCCGTCATTGTCGGCGGCCACCTCCCAAGACGAT
TTCATGTCCTCATCCACATCTGTGGACTATCACCACTCGCGACAAACATC
GCAAGATCAACTACCTGTGGCAGCGCCGGTGGCCCTTCCCACCGTATTCG
CTTCCATCACCGCAAGTGCTACTGCAGGGAAGAGCTCGGACAAAGCGGCG
GCGGCGGCGGCGGCGGCGGCGGTGGAGGTTCAAATGGCAGCGACTGGC
back to top