mRNA_H-paniculata_contig14386.2635.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14386.2635.1
Unique NamemRNA_H-paniculata_contig14386.2635.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14386.2635.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14386contigH-paniculata_contig14386:3651..4396 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size747
Cds size744
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929144.666227-UTR-H-paniculata_contig14386:3650..36521622929144.666227-UTR-H-paniculata_contig14386:3650..3652Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14386 3651..3652 +
1691480748.4643698-UTR-H-paniculata_contig14386:3650..36521691480748.4643698-UTR-H-paniculata_contig14386:3650..3652Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14386 3651..3652 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929144.6827054-CDS-H-paniculata_contig14386:3652..43961622929144.6827054-CDS-H-paniculata_contig14386:3652..4396Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14386 3653..4396 +
1691480748.4754624-CDS-H-paniculata_contig14386:3652..43961691480748.4754624-CDS-H-paniculata_contig14386:3652..4396Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14386 3653..4396 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14386.2635.1prot_H-paniculata_contig14386.2635.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14386 3653..4396 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14386.2635.1

>prot_H-paniculata_contig14386.2635.1 ID=prot_H-paniculata_contig14386.2635.1|Name=mRNA_H-paniculata_contig14386.2635.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=248bp
MLGMGRGMGGVAPGYGTRPQPAHANLGRDGGPRGGALGRGWHTTILAWMP
AQTGDYTRRAGAPAQAQQTVGGVHSAAPPAMTAVGRRRSDTATQQPAQAI
GGRRGEGPEEVAADGNALLESAHCARPMAGSPVVGTRSRSGHEEPPLQPP
RSRPRLSSPRENCIAHTLTQIGVNRCRARSTLPSLSCPRPLNIRRVSFLT
LGRASPANKNCRPDYRPQRQWRLPWSSKFPRVPRLAKGQHRPSRGRRF
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mRNA from alignment at H-paniculata_contig14386:3651..4396+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14386.2635.1 ID=mRNA_H-paniculata_contig14386.2635.1|Name=mRNA_H-paniculata_contig14386.2635.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=746bp|location=Sequence derived from alignment at H-paniculata_contig14386:3651..4396+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTATGCTGGGAATGGGAAGGGGAATGGGCGGGGTGGCTCCGGGATATGGG
ACGAGACCACAACCGGCGCACGCGAATCTGGGGAGAGATGGGGGACCTCG
CGGCGGAGCGCTCGGGCGCGGGTGGCACACTACGATACTGGCGTGGATGC
CTGCGCAGACTGGGGACTACACGCGGCGAGCGGGGGCGCCTGCTCAAGCC
CAGCAAACAGTGGGTGGTGTACACTCGGCTGCACCGCCCGCGATGACAGC
GGTTGGACGCAGGAGGTCAGACACAGCGACGCAGCAGCCCGCGCAGGCGA
TCGGTGGTCGGCGGGGCGAGGGACCGGAGGAAGTAGCAGCGGACGGCAAT
GCTCTCTTGGAAAGCGCGCATTGCGCCAGGCCAATGGCGGGATCGCCAGT
GGTAGGGACGCGTAGTAGATCGGGGCATGAGGAGCCACCTTTGCAGCCAC
CCAGGAGTCGGCCCCGCCTTTCCTCGCCAAGGGAGAATTGCATCGCACAC
ACACTGACGCAAATCGGCGTTAACAGGTGCAGAGCCCGGTCGACATTACC
ATCGTTGTCTTGCCCGAGGCCTCTTAACATTCGTCGAGTTTCTTTCCTGA
CCCTAGGTCGTGCCTCGCCTGCGAACAAGAACTGCCGCCCAGACTACCGA
CCCCAGCGGCAGTGGCGGCTGCCCTGGTCTTCCAAATTTCCCCGGGTACC
TCGACTGGCCAAGGGTCAACACAGGCCCTCGCGAGGCCGTCGATTT
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Coding sequence (CDS) from alignment at H-paniculata_contig14386:3651..4396+

>mRNA_H-paniculata_contig14386.2635.1 ID=mRNA_H-paniculata_contig14386.2635.1|Name=mRNA_H-paniculata_contig14386.2635.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1488bp|location=Sequence derived from alignment at H-paniculata_contig14386:3651..4396+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTGGGAATGGGAAGGGGAATGGGCGGGGTGGCTCCGGGATATGGGAC
GAGACCACAACCGGCGCACGCGAATCTGGGGAGAGATGGGGGACCTCGCG
GCGGAGCGCTCGGGCGCGGGTGGCACACTACGATACTGGCGTGGATGCCT
GCGCAGACTGGGGACTACACGCGGCGAGCGGGGGCGCCTGCTCAAGCCCA
GCAAACAGTGGGTGGTGTACACTCGGCTGCACCGCCCGCGATGACAGCGG
TTGGACGCAGGAGGTCAGACACAGCGACGCAGCAGCCCGCGCAGGCGATC
GGTGGTCGGCGGGGCGAGGGACCGGAGGAAGTAGCAGCGGACGGCAATGC
TCTCTTGGAAAGCGCGCATTGCGCCAGGCCAATGGCGGGATCGCCAGTGG
TAGGGACGCGTAGTAGATCGGGGCATGAGGAGCCACCTTTGCAGCCACCC
AGGAGTCGGCCCCGCCTTTCCTCGCCAAGGGAGAATTGCATCGCACACAC
ACTGACGCAAATCGGCGTTAACAGGTGCAGAGCCCGGTCGACATTACCAT
CGTTGTCTTGCCCGAGGCCTCTTAACATTCGTCGAGTTTCTTTCCTGACC
CTAGGTCGTGCCTCGCCTGCGAACAAGAACTGCCGCCCAGACTACCGACC
CCAGCGGCAGTGGCGGCTGCCCTGGTCTTCCAAATTTCCCCGGGTACCTC
GACTGGCCAAGGGTCAACACAGGCCCTCGCGAGGCCGTCGATTTATGCTG
GGAATGGGAAGGGGAATGGGCGGGGTGGCTCCGGGATATGGGACGAGACC
ACAACCGGCGCACGCGAATCTGGGGAGAGATGGGGGACCTCGCGGCGGAG
CGCTCGGGCGCGGGTGGCACACTACGATACTGGCGTGGATGCCTGCGCAG
ACTGGGGACTACACGCGGCGAGCGGGGGCGCCTGCTCAAGCCCAGCAAAC
AGTGGGTGGTGTACACTCGGCTGCACCGCCCGCGATGACAGCGGTTGGAC
GCAGGAGGTCAGACACAGCGACGCAGCAGCCCGCGCAGGCGATCGGTGGT
CGGCGGGGCGAGGGACCGGAGGAAGTAGCAGCGGACGGCAATGCTCTCTT
GGAAAGCGCGCATTGCGCCAGGCCAATGGCGGGATCGCCAGTGGTAGGGA
CGCGTAGTAGATCGGGGCATGAGGAGCCACCTTTGCAGCCACCCAGGAGT
CGGCCCCGCCTTTCCTCGCCAAGGGAGAATTGCATCGCACACACACTGAC
GCAAATCGGCGTTAACAGGTGCAGAGCCCGGTCGACATTACCATCGTTGT
CTTGCCCGAGGCCTCTTAACATTCGTCGAGTTTCTTTCCTGACCCTAGGT
CGTGCCTCGCCTGCGAACAAGAACTGCCGCCCAGACTACCGACCCCAGCG
GCAGTGGCGGCTGCCCTGGTCTTCCAAATTTCCCCGGGTACCTCGACTGG
CCAAGGGTCAACACAGGCCCTCGCGAGGCCGTCGATTT
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