mRNA_H-paniculata_contig1438.2634.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1438.2634.1
Unique NamemRNA_H-paniculata_contig1438.2634.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1438.2634.1 vs. uniprot
Match: D8LBS0_ECTSI (eIF-5a domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBS0_ECTSI)

HSP 1 Score: 319 bits (818), Expect = 1.200e-109
Identity = 156/165 (94.55%), Postives = 160/165 (96.97%), Query Frame = 1 
Query:    7 RKTMATEDKLNDYDFTGTDAGASHTIPSEAGQIRKGGYIVIKGHPCKVVNVSTSKTGKHGHAKANFTATDIFTGKKLEDVIPSTHTTSVPVVRRNEFQLLDISDDGFCSLLTEEGDTKDDLQLPTYPEGFGQEIKNQFEEGKTLCVTVMAAMGHEQIVTYKEESG 501
            + TMATEDKLNDYDFTGTDAGASHTIPSEAGQIRKGGYIVIKGHPCKVVNVSTSKTGKHGHAKANFTATDIFTGKKLEDVIPSTHTTSVPVV RNE+QLLDISDDGFCSLLTEEGDTKDDLQLPTYPEGFG EIK +F+EG TLCVTVMAAMGHEQIVTYKEESG
Sbjct:   36 KSTMATEDKLNDYDFTGTDAGASHTIPSEAGQIRKGGYIVIKGHPCKVVNVSTSKTGKHGHAKANFTATDIFTGKKLEDVIPSTHTTSVPVVSRNEYQLLDISDDGFCSLLTEEGDTKDDLQLPTYPEGFGNEIKAKFDEGATLCVTVMAAMGHEQIVTYKEESG 200
[Close]
BLAST of mRNA_H-paniculata_contig1438.2634.1 vs. uniprot
Match: A0A6H5KDL5_9PHAE (eIF-5a domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDL5_9PHAE)

HSP 1 Score: 320 bits (820), Expect = 3.860e-109
Identity = 158/166 (95.18%), Postives = 160/166 (96.39%), Query Frame = 1 
Query:    4 SRKTMATEDKLNDYDFTGTDAGASHTIPSEAGQIRKGGYIVIKGHPCKVVNVSTSKTGKHGHAKANFTATDIFTGKKLEDVIPSTHTTSVPVVRRNEFQLLDISDDGFCSLLTEEGDTKDDLQLPTYPEGFGQEIKNQFEEGKTLCVTVMAAMGHEQIVTYKEESG 501
            S  TMATEDKLNDYDFTGTDAGASHTIPSEAGQIRKGGYIVIKGHPCKVVNVSTSKTGKHGHAKANFTATDIFTGKKLEDVIPSTHTTSVPVV RNE+QLLDISDDGFCSLLTEEGDTKDDLQLPTYPEGFG EIK +FEEG TLCVTVMAAMGHEQIVTYKEESG
Sbjct:   89 SLSTMATEDKLNDYDFTGTDAGASHTIPSEAGQIRKGGYIVIKGHPCKVVNVSTSKTGKHGHAKANFTATDIFTGKKLEDVIPSTHTTSVPVVSRNEYQLLDISDDGFCSLLTEEGDTKDDLQLPTYPEGFGNEIKAKFEEGLTLCVTVMAAMGHEQIVTYKEESG 254
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BLAST of mRNA_H-paniculata_contig1438.2634.1 vs. uniprot
Match: A0A835Z7R2_9STRA (Eukaryotic translation initiation factor 5A n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7R2_9STRA)

HSP 1 Score: 250 bits (639), Expect = 7.520e-83
Identity = 116/163 (71.17%), Postives = 143/163 (87.73%), Query Frame = 1 
Query:   10 KTMATEDKLNDYDFTGTDAGASHTIPSEAGQIRKGGYIVIKGHPCKVVNVSTSKTGKHGHAKANFTATDIFTGKKLEDVIPSTHTTSVPVVRRNEFQLLDISDDGFCSLLTEEGDTKDDLQLPTYPEGFGQEIKNQFEEGKTLCVTVMAAMGHEQIVTYKEES 498
            +T AT++ LN+YDFT +DAGASHT P +AGQIRKGGYIVIKG PCKV NVSTSKTGKHGHAKANFTA DIFTGKKLED++P++H TSVP V R ++QLLDISDDGF SLLTE GDTKDDL+LP +PEGF ++++ +F+ GKTL VTV++AMGH+Q++ YKE++
Sbjct:    3 ETSATDEALNNYDFTSSDAGASHTFPMDAGQIRKGGYIVIKGRPCKVANVSTSKTGKHGHAKANFTAIDIFTGKKLEDIVPTSHATSVPNVARVDYQLLDISDDGFLSLLTESGDTKDDLKLPGFPEGFDEQLRTEFDAGKTLIVTVVSAMGHDQVMAYKEDT 165
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BLAST of mRNA_H-paniculata_contig1438.2634.1 vs. uniprot
Match: A0A7S2UU65_9STRA (Eukaryotic translation initiation factor 5A n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UU65_9STRA)

HSP 1 Score: 227 bits (579), Expect = 8.700e-74
Identity = 109/156 (69.87%), Postives = 134/156 (85.90%), Query Frame = 1 
Query:   31 KLNDYDFTGTDAGASHTIPSEAGQIRKGGYIVIKGHPCKVVNVSTSKTGKHGHAKANFTATDIFTGKKLEDVIPSTHTTSVPVVRRNEFQLLDISDDGFCSLLTEEGDTKDDLQLPTYPEGFGQEIKNQFEEGKTLCVTVMAAMGHEQIVTYKEES 498
            KL+D+ F   ++GAS TIP EAGQIRKGG+IVIKG PCKVVNVSTSKTGKHGHAKANFTA DIFTGKK ED++P+THTTSVP V R E+QL+DISDDG+ SLLT+ GDTKDDL LPT+PEGF  EI+  F+EGK++ +TV++AMG +Q+V+ KE++
Sbjct:    7 KLDDFHFDTGESGASLTIPMEAGQIRKGGHIVIKGKPCKVVNVSTSKTGKHGHAKANFTAIDIFTGKKYEDIVPTTHTTSVPNVSRAEYQLIDISDDGYLSLLTDSGDTKDDLVLPTHPEGFADEIRAAFDEGKSMVLTVLSAMGTDQVVSMKEDT 162
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BLAST of mRNA_H-paniculata_contig1438.2634.1 vs. uniprot
Match: W7U6Y6_9STRA (Eukaryotic translation initiation factor 5A n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U6Y6_9STRA)

HSP 1 Score: 224 bits (570), Expect = 1.970e-72
Identity = 111/166 (66.87%), Postives = 136/166 (81.93%), Query Frame = 1 
Query:    1 MSRKTMATEDKLNDYDFTGTDAGASHTIPSEAGQIRKGGYIVIKGHPCKVVNVSTSKTGKHGHAKANFTATDIFTGKKLEDVIPSTHTTSVPVVRRNEFQLLDISDDGFCSLLTEEGDTKDDLQLPTYPEGFGQEIKNQFEEGKTLCVTVMAAMGHEQIVTYKEES 498
            M+ +  AT   + DYDF+GT AGAS   PSEAGQI+KGGYI+IKG PCKVVNVSTSKTGKHGHAKANFTA DIF GKK+EDV+P+THTT VP V R+E+QLLDI +DGF SLL E+G T+DDL+LP YPEGF QEI   +++GK+L V+V++A G +QI+ YKEE+
Sbjct:    1 MAEEAAAT---IEDYDFSGTTAGASDVFPSEAGQIKKGGYIMIKGRPCKVVNVSTSKTGKHGHAKANFTAIDIFNGKKVEDVVPTTHTTYVPNVNRSEYQLLDI-EDGFVSLLQEDGGTRDDLKLPDYPEGFDQEILKAYQDGKSLSVSVLSACGIDQIIAYKEEA 162
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BLAST of mRNA_H-paniculata_contig1438.2634.1 vs. uniprot
Match: A0A8K1CGM3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CGM3_PYTOL)

HSP 1 Score: 221 bits (562), Expect = 2.950e-71
Identity = 104/154 (67.53%), Postives = 127/154 (82.47%), Query Frame = 1 
Query:   37 NDYDFTGTDAGASHTIPSEAGQIRKGGYIVIKGHPCKVVNVSTSKTGKHGHAKANFTATDIFTGKKLEDVIPSTHTTSVPVVRRNEFQLLDISDDGFCSLLTEEGDTKDDLQLPTYPEGFGQEIKNQFEEGKTLCVTVMAAMGHEQIVTYKEES 498
            +DY F  TDAGAS T P EAGQI+K G+I+IKGHPCKVVNVSTSKTGKHGHAK NFTA DIFT KKLED++PSTHTTSVP V R E+ LLDIS+D F SL+ E GDT++D++LP+YP+GF  EI++ FE+GK L VTV+ A G EQI++ KE++
Sbjct:    3 DDYTFESTDAGASETYPMEAGQIKKNGFIMIKGHPCKVVNVSTSKTGKHGHAKCNFTALDIFTNKKLEDIVPSTHTTSVPFVSRKEYTLLDISEDDFVSLMDESGDTREDVKLPSYPDGFANEIRSDFEDGKQLVVTVLKACGTEQIISKKEDT 156
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BLAST of mRNA_H-paniculata_contig1438.2634.1 vs. uniprot
Match: M4B4L4_HYAAE (Eukaryotic translation initiation factor 5A n=18 Tax=Peronosporaceae TaxID=4777 RepID=M4B4L4_HYAAE)

HSP 1 Score: 220 bits (561), Expect = 4.330e-71
Identity = 106/160 (66.25%), Postives = 130/160 (81.25%), Query Frame = 1 
Query:   16 MATEDKLNDYDFTGTDAGASHTIPSEAGQIRKGGYIVIKGHPCKVVNVSTSKTGKHGHAKANFTATDIFTGKKLEDVIPSTHTTSVPVVRRNEFQLLDISDDGFCSLLTEEGDTKDDLQLPTYPEGFGQEIKNQFEEGKTLCVTVMAAMGHEQIVTYKEE 495
            MA E++  D+ F  TDAGAS T PSEAGQIRKGG+I+IKGHPCKVVN+STSKTGKHGHAK NFTA DIFT KK ED++PSTHTTSVP V R E+ LLDI+DD FCSL+ + GDT++D++LPT+PE FG+EI+  F +GK L +TV+ A G EQI+  KE+
Sbjct:    1 MAEEEQ--DFTFHSTDAGASETYPSEAGQIRKGGFIMIKGHPCKVVNMSTSKTGKHGHAKCNFTALDIFTNKKYEDIVPSTHTTSVPFVSRAEYTLLDITDDDFCSLMDDSGDTREDIKLPTFPETFGEEIRADFNDGKQLVLTVLKACGTEQIIAKKED 158
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BLAST of mRNA_H-paniculata_contig1438.2634.1 vs. uniprot
Match: A0A6A3TKK1_9STRA (Eukaryotic translation initiation factor 5A n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3TKK1_9STRA)

HSP 1 Score: 218 bits (554), Expect = 9.420e-70
Identity = 105/163 (64.42%), Postives = 131/163 (80.37%), Query Frame = 1 
Query:   13 TMATEDKLNDYDFTGTDAGASHTIPSEAGQIRKGGYIVIKGHPCKVVNVSTSKTGKHGHAKANFTATDIFTGKKLEDVIPSTHTTSVPVVRRNEFQLLDISDDGFCSLLTEEGDTKDDLQLPTYPEGFGQEIKNQFEEGKTLCVTVMAAMGHEQIVTYKEESG 501
            TMA E + +D++F  TDAGAS T PSEAGQIRKGG+I+IKGHPCKVVNVSTSKTGKHGHAK NFTA DIFT KK ED++PSTHTTSVP V R E+ LLDI+DD F SL+ + G+T++D++LPT+PE F  EI+  F++GK L +TV+ A G EQ++  KE+ G
Sbjct:   17 TMA-EHEEHDFEFHSTDAGASETYPSEAGQIRKGGFIMIKGHPCKVVNVSTSKTGKHGHAKCNFTALDIFTNKKYEDIVPSTHTTSVPFVSRAEYTLLDITDDDFVSLMDDSGETREDIKLPTFPETFADEIRADFDDGKQLVLTVLKACGTEQVIAKKEDLG 178
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BLAST of mRNA_H-paniculata_contig1438.2634.1 vs. uniprot
Match: A0A5D6XTX1_9STRA (Eukaryotic translation initiation factor 5A n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XTX1_9STRA)

HSP 1 Score: 215 bits (548), Expect = 3.990e-69
Identity = 103/153 (67.32%), Postives = 124/153 (81.05%), Query Frame = 1 
Query:   40 DYDFTGTDAGASHTIPSEAGQIRKGGYIVIKGHPCKVVNVSTSKTGKHGHAKANFTATDIFTGKKLEDVIPSTHTTSVPVVRRNEFQLLDISDDGFCSLLTEEGDTKDDLQLPTYPEGFGQEIKNQFEEGKTLCVTVMAAMGHEQIVTYKEES 498
            DY F  TDAGAS T P EAGQIRKGG+I+IKGHPCKVV+VSTSKTGKHGHAK NFTA DIFT KKLED++PSTHTTSVP V R E+ LLDISDD F +L+ + GDT+DD++LPT+P+ F  EI+  F+ GK L VTV+ A G EQI++ KE++
Sbjct:    5 DYTFESTDAGASDTYPCEAGQIRKGGFIMIKGHPCKVVSVSTSKTGKHGHAKCNFTALDIFTNKKLEDIVPSTHTTSVPFVARAEYTLLDISDDDFVTLMDDGGDTRDDIKLPTFPDNFADEIRADFDSGKQLVVTVLKACGIEQIISKKEDT 157
[Close]
BLAST of mRNA_H-paniculata_contig1438.2634.1 vs. uniprot
Match: K3WUI8_GLOUD (Eukaryotic translation initiation factor 5A n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WUI8_GLOUD)

HSP 1 Score: 214 bits (545), Expect = 1.140e-68
Identity = 99/154 (64.29%), Postives = 127/154 (82.47%), Query Frame = 1 
Query:   37 NDYDFTGTDAGASHTIPSEAGQIRKGGYIVIKGHPCKVVNVSTSKTGKHGHAKANFTATDIFTGKKLEDVIPSTHTTSVPVVRRNEFQLLDISDDGFCSLLTEEGDTKDDLQLPTYPEGFGQEIKNQFEEGKTLCVTVMAAMGHEQIVTYKEES 498
            +DY F  TDAGAS T P EAGQIRKGG+I+IKGHPCKVV+VSTSKTGKHGHAK NFTA DIFT KKLED++PSTHTTSVP V R+E+ LLDI+DD F SL+ + G+T++D++LPT+P+ F +EI+  F+ GK L +TV+ A G EQ+++ KE++
Sbjct:    3 DDYTFESTDAGASDTFPCEAGQIRKGGFIMIKGHPCKVVSVSTSKTGKHGHAKCNFTALDIFTNKKLEDIVPSTHTTSVPFVSRSEYTLLDITDDDFLSLMDDSGETREDIKLPTFPDNFAEEIRADFDAGKQLVLTVLKACGTEQVISKKEDT 156
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1438.2634.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBS0_ECTSI1.200e-10994.55eIF-5a domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5KDL5_9PHAE3.860e-10995.18eIF-5a domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A835Z7R2_9STRA7.520e-8371.17Eukaryotic translation initiation factor 5A n=2 Ta... [more]
A0A7S2UU65_9STRA8.700e-7469.87Eukaryotic translation initiation factor 5A n=1 Ta... [more]
W7U6Y6_9STRA1.970e-7266.87Eukaryotic translation initiation factor 5A n=2 Ta... [more]
A0A8K1CGM3_PYTOL2.950e-7167.53Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
M4B4L4_HYAAE4.330e-7166.25Eukaryotic translation initiation factor 5A n=18 T... [more]
A0A6A3TKK1_9STRA9.420e-7064.42Eukaryotic translation initiation factor 5A n=3 Ta... [more]
A0A5D6XTX1_9STRA3.990e-6967.32Eukaryotic translation initiation factor 5A n=1 Ta... [more]
K3WUI8_GLOUD1.140e-6864.29Eukaryotic translation initiation factor 5A n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1438contigH-paniculata_contig1438:23693..26153 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score320.9
Seed ortholog evalue3.7e-85
Seed eggNOG ortholog2880.D8LBS0
Preferred nameEIF5A2
KEGG koko:K03263,ko:K10447
KEGG Pathwayko04120,map04120
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0002119,GO:0002164,GO:0002181,GO:0002182,GO:0002184,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0003746,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005642,GO:0005643,GO:0005737,GO:0005739,GO:0005777,GO:0005783,GO:0005789,GO:0005829,GO:0005840,GO:0006403,GO:0006405,GO:0006406,GO:0006412,GO:0006413,GO:0006414,GO:0006415,GO:0006417,GO:0006446,GO:0006448,GO:0006449,GO:0006452,GO:0006518,GO:0006611,GO:0006807,GO:0006810,GO:0006873,GO:0006874,GO:0006875,GO:0006886,GO:0006913,GO:0006915,GO:0007204,GO:0007275,GO:0007276,GO:0007283,GO:0007548,GO:0007568,GO:0008079,GO:0008104,GO:0008135,GO:0008150,GO:0008152,GO:0008219,GO:0008284,GO:0008360,GO:0008406,GO:0009058,GO:0009059,GO:0009653,GO:0009719,GO:0009725,GO:0009791,GO:0009887,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010509,GO:0010556,GO:0010557,GO:0010564,GO:0010604,GO:0010608,GO:0010628,GO:0010660,GO:0010661,GO:0010662,GO:0010663,GO:0010665,GO:0010666,GO:0010941,GO:0010942,GO:0012501,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016043,GO:0017069,GO:0017070,GO:0019222,GO:0019538,GO:0019725,GO:0019953,GO:0022411,GO:0022414,GO:0022603,GO:0022604,GO:0022626,GO:0030003,GO:0030425,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031344,GO:0031503,GO:0031967,GO:0031975,GO:0031984,GO:0032268,GO:0032270,GO:0032465,GO:0032467,GO:0032501,GO:0032502,GO:0032504,GO:0032870,GO:0032984,GO:0032991,GO:0033036,GO:0034248,GO:0034250,GO:0034613,GO:0034641,GO:0034645,GO:0035262,GO:0036477,GO:0042127,GO:0042175,GO:0042221,GO:0042579,GO:0042592,GO:0042886,GO:0042981,GO:0042995,GO:0043005,GO:0043021,GO:0043022,GO:0043025,GO:0043043,GO:0043065,GO:0043066,GO:0043067,GO:0043068,GO:0043069,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043243,GO:0043244,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044087,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044297,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044445,GO:0044446,GO:0044463,GO:0044464,GO:0044703,GO:0044877,GO:0045137,GO:0045138,GO:0045184,GO:0045595,GO:0045597,GO:0045727,GO:0045787,GO:0045901,GO:0045905,GO:0045948,GO:0046661,GO:0046907,GO:0047485,GO:0048232,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048608,GO:0048609,GO:0048731,GO:0048856,GO:0048878,GO:0050657,GO:0050658,GO:0050789,GO:0050793,GO:0050794,GO:0050801,GO:0050896,GO:0051028,GO:0051094,GO:0051128,GO:0051130,GO:0051147,GO:0051149,GO:0051168,GO:0051169,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051247,GO:0051302,GO:0051480,GO:0051641,GO:0051649,GO:0051704,GO:0051716,GO:0051726,GO:0051781,GO:0055065,GO:0055074,GO:0055080,GO:0055082,GO:0060255,GO:0060491,GO:0060548,GO:0061458,GO:0065007,GO:0065008,GO:0070727,GO:0070887,GO:0071166,GO:0071310,GO:0071426,GO:0071427,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072503,GO:0072507,GO:0080090,GO:0090068,GO:0090342,GO:0090343,GO:0090598,GO:0097066,GO:0097067,GO:0097159,GO:0097447,GO:0097458,GO:0098589,GO:0098771,GO:0098805,GO:0098827,GO:0120025,GO:0120038,GO:1900247,GO:1900249,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903270,GO:1903272,GO:1990904,GO:2000112,GO:2000377,GO:2000379,GO:2000765,GO:2000767
EggNOG free text desc.eukaryotic translation initiation factor
EggNOG OGsCOG0231@1,KOG3271@2759
Ec32 ortholog descriptionTranslation protein SH3-like domain
Ec32 orthologEc-27_002930.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03012,ko04121
Exons4
Model size504
Cds size504
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1438.2634.1prot_H-paniculata_contig1438.2634.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1438 23693..26153 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929144.4547174-CDS-H-paniculata_contig1438:23692..238391622929144.4547174-CDS-H-paniculata_contig1438:23692..23839Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1438 23693..23839 +
1691480748.4127874-CDS-H-paniculata_contig1438:23692..238391691480748.4127874-CDS-H-paniculata_contig1438:23692..23839Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1438 23693..23839 +
1622929144.4720178-CDS-H-paniculata_contig1438:25223..254191622929144.4720178-CDS-H-paniculata_contig1438:25223..25419Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1438 25224..25419 +
1691480748.4267333-CDS-H-paniculata_contig1438:25223..254191691480748.4267333-CDS-H-paniculata_contig1438:25223..25419Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1438 25224..25419 +
1622929144.482803-CDS-H-paniculata_contig1438:25783..258781622929144.482803-CDS-H-paniculata_contig1438:25783..25878Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1438 25784..25878 +
1691480748.4393692-CDS-H-paniculata_contig1438:25783..258781691480748.4393692-CDS-H-paniculata_contig1438:25783..25878Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1438 25784..25878 +
1622929144.4931962-CDS-H-paniculata_contig1438:26087..261531622929144.4931962-CDS-H-paniculata_contig1438:26087..26153Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1438 26088..26153 +
1691480748.4545615-CDS-H-paniculata_contig1438:26087..261531691480748.4545615-CDS-H-paniculata_contig1438:26087..26153Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1438 26088..26153 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1438.2634.1

>prot_H-paniculata_contig1438.2634.1 ID=prot_H-paniculata_contig1438.2634.1|Name=mRNA_H-paniculata_contig1438.2634.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=168bp
MSRKTMATEDKLNDYDFTGTDAGASHTIPSEAGQIRKGGYIVIKGHPCKV
VNVSTSKTGKHGHAKANFTATDIFTGKKLEDVIPSTHTTSVPVVRRNEFQ
LLDISDDGFCSLLTEEGDTKDDLQLPTYPEGFGQEIKNQFEEGKTLCVTV
MAAMGHEQIVTYKEESG*
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mRNA from alignment at H-paniculata_contig1438:23693..26153+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1438.2634.1 ID=mRNA_H-paniculata_contig1438.2634.1|Name=mRNA_H-paniculata_contig1438.2634.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2461bp|location=Sequence derived from alignment at H-paniculata_contig1438:23693..26153+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGTAGAAAGACAATGGCTACCGAGGACAAGCTGAACGACTACGACTT
CACCGGCACGGACGCCGGTGCCTCGCACACGATCCCGTCCGAAGCCGGCC
AGATTCGCAAGGGTGGCTACATTGTCATCAAGGGTCACCCCTGCAAGGTT
AGGCGATATCTCTCTATATATTCTTGATGGTTTCGAACGGTAGCAGAGCG
CTTCAAGTCTGGATGCCGGTTCACTTTTTCACTGCTCACACGAGTGTAGG
CATGGATATGAGCAGGAGGCGATGAACAATATAAGGGCGTAGGGGGGAGT
GGAGGGCGTGACGTAGGTGACAGAGAACGTTTCGGATCTCACCCGGTTTC
CTCAACCATGGTCCTTTTTTCAGTTTTTGGTGGCTTTTCTTACTATCATC
AACACTGTAGCTGTCGCCAATCCACTCGAATTACAAATGTCCAGTATTCC
GATAAATCTCTGTAGAGAGCTAGTCGTGTGTGTGTCCCACGTAAGACCCC
TCTGAGTCAACACTAGTTCGAGCATATTCTCTTGTGAAAGCACTTTGTCC
CTACAAATTGTTATTTACTGCTATCGTAAATCGCTTGCTTCTGGGATATG
AGAAGACAATCACAGTGACGTGTGTATTTTGTATTTGTCTACCATCGATC
ATGAACCAAAACGTAAGGCAGATGAAATATCACTGATACCGTACTCGTCA
TCTCGGGGGTTGTACGGAAAACAGCTTTTCACTGAACAATTCAGTGGGAG
CAACTTTTCTAGGGCGCCCTTGAAAAAGGCTGCTTCGGAATGGACAACGA
TCCATCAGCTAAGACCAAATGCTGCCACCCTCTTCTTTCGCACAATCTCC
CAATCCCGACTGGACACTGGCTTGTTGAACGGGGGGTGGTTCCGTGCTCT
CACTATTATTTGACGAGTGTTGCTTCTCAGTTGGTATGAATTCAGTGGAA
TCTGGTCCCTGGAGGGTTGAAAAGCCCTTGAGCGAACTTGTGATAGATGA
GCGTAACGTTTTGCCCATCGTGCAAAACCACCTGGTCGAAGAAAACAGTT
TGGAACAGCACGGTAAGACGTTTGCTCTTTGCTGGTTTTATGGAGAAAAA
AAATCAATTGATGTTCTTGTTTTGTTTTAGACCAGTGCAATGAACTTTCA
ATAGGTCATAATAAGTGGCTGGTCTGTGGTTTGGTGATCGAGATTGAATA
TCCAGTAATTATTGGTTGGATATCGACCAGAAATTAAACTATTGATTCAA
CTGTCAGCCAGATTTACGTACCCGAAAAAAGCAAAAGGGATGGTTGATTC
CGTCATGGTAGGTTGTTGGTTACCGTTCGCCCGCAGCCAGCGGGAATAAA
CATTTCATCCGCAAAGTATGATGGACCTCAAAATTGTAGTTAAACCCTGC
TGTAACGATATACTTGATTCGCTTTTACATTTTGGTCGCCCGTCATGAAA
ATCGCCCAAAATGGACAATATTCCCGAGCTTTCGTATCAAAGTTGGAAAC
CAGAACCTGTTGGGATGCCATGACAACGCAGGTGGTGAACGTATCCACCT
CCAAGACCGGCAAGCACGGCCACGCGAAGGCAAACTTCACCGCCACCGAC
ATTTTTACTGGAAAGAAGCTGGAAGATGTGATTCCTTCGACACACACGAC
CTCCGTTCCCGTGGTGCGCCGTAACGAGTTTCAGCTCCTGGACATTTCCG
ACGATGGCTTCTGCTCTCTCCTCACCGGTAAGCATATTTATGTCATTTCA
AGTTATTATCCATTAGCATGTTTCGGAATGTTTGGAAGTATTTCATTGCC
TTGACAACTTGCGTAAAGAGGACGAACGCGAGCTCCGTACTGTCTGTTTG
CTGTTTTTGTGGTGGAGGGTGTCCATGTGTTTGCAGTACGTACAGTGTAT
CTCATGATGTGCTAAATTTTTATATTTTTCGTTCTCGATATTGTTCCAGC
AAGTGTGTGTGTGTGTGTGTTTGGCTCGGTCGTTCGTCGTAGGGCTTGAT
ATTCAATTGTGTACTTGATTCGTCTTTTTAGAGAAGAAACTTCAAACCTA
CTCTGTCCCCCCGTTACTACTTTTTCTTTTTTCTCGAATAGAGGAGGGCG
ACACCAAGGATGACCTTCAGCTTCCCACCTACCCCGAAGGCTTTGGCCAG
GAGATCAAAAACCAGTTCGAAGAAGGAAAGACTCTGGTGAGCAACTTTCT
TGATTGTATTATGTCTCTGGACTCTGCACCATAGGTCGTTTCTTGGTAAC
GTTCTGAATTTATATGAGCGTAGGTTTGTGGTCAGGAGGGTCGGTGAAGT
AATGTTTTTCGCCGGTAGTGCGATAAGGTAACAATCCATCGTGTGCTGTC
CGTGACCCCGCGTCTCGCCCACCTAACTTCCTTGCGTTTGTTTAGTGCGT
GACTGTGATGGCTGCGATGGGCCACGAGCAGATCGTCACCTACAAGGAGG
AATCGGGCTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig1438:23693..26153+

>mRNA_H-paniculata_contig1438.2634.1 ID=mRNA_H-paniculata_contig1438.2634.1|Name=mRNA_H-paniculata_contig1438.2634.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1008bp|location=Sequence derived from alignment at H-paniculata_contig1438:23693..26153+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGTAGAAAGACAATGGCTACCGAGGACAAGCTGAACGACTACGACTT
CACCGGCACGGACGCCGGTGCCTCGCACACGATCCCGTCCGAAGCCGGCC
AGATTCGCAAGGGTGGCTACATTGTCATCAAGGGTCACCCCTGCAAGATG
AGTAGAAAGACAATGGCTACCGAGGACAAGCTGAACGACTACGACTTCAC
CGGCACGGACGCCGGTGCCTCGCACACGATCCCGTCCGAAGCCGGCCAGA
TTCGCAAGGGTGGCTACATTGTCATCAAGGGTCACCCCTGCAAGGTGGTG
AACGTATCCACCTCCAAGACCGGCAAGCACGGCCACGCGAAGGCAAACTT
CACCGCCACCGACATTTTTACTGGAAAGAAGCTGGAAGATGTGATTCCTT
CGACACACACGACCTCCGTTCCCGTGGTGCGCCGTAACGAGTTTCAGCTC
CTGGACATTTCCGACGATGGCTTCTGCTCTCTCCTCACCGGTGGTGAACG
TATCCACCTCCAAGACCGGCAAGCACGGCCACGCGAAGGCAAACTTCACC
GCCACCGACATTTTTACTGGAAAGAAGCTGGAAGATGTGATTCCTTCGAC
ACACACGACCTCCGTTCCCGTGGTGCGCCGTAACGAGTTTCAGCTCCTGG
ACATTTCCGACGATGGCTTCTGCTCTCTCCTCACCGAGGAGGGCGACACC
AAGGATGACCTTCAGCTTCCCACCTACCCCGAAGGCTTTGGCCAGGAGAT
CAAAAACCAGTTCGAAGAAGGAAAGACTCTGAGGAGGGCGACACCAAGGA
TGACCTTCAGCTTCCCACCTACCCCGAAGGCTTTGGCCAGGAGATCAAAA
ACCAGTTCGAAGAAGGAAAGACTCTGTGCGTGACTGTGATGGCTGCGATG
GGCCACGAGCAGATCGTCACCTACAAGGAGGAATCGGGCTGATGCGTGAC
TGTGATGGCTGCGATGGGCCACGAGCAGATCGTCACCTACAAGGAGGAAT
CGGGCTGA
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