mRNA_H-paniculata_contig1438.2633.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1438.2633.1
Unique NamemRNA_H-paniculata_contig1438.2633.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1438.2633.1 vs. uniprot
Match: D8LBS1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBS1_ECTSI)

HSP 1 Score: 116 bits (290), Expect = 5.950e-29
Identity = 77/195 (39.49%), Postives = 86/195 (44.10%), Query Frame = 1 
Query:   19 DEEYSEMAWAIAARGKSGREIGFLHETWANAQTARGVLDKAQQEHLDKALEIWERYDDLSLVARTWCLKGSCSVESNDFMTAADSFKRAQKVAEEVDDVPLVLCAMANRTICEIRRGEAKAAATHARRVFVKAADEANAEAIMVSHCVRAASYQMGGNFSAACNEHEAAAKMISKGTVKSPDPDLLLAMDTNFGI 603
            D E S MAW  A RGKSGREI  LH++WA A  ARG  +KAQ EHLD ALE W  YD+  L AR WCLK SCS E+ D                                                                     +RA SYQM GNF AACNEHEAAAK+  +  V    P   L M+TNFGI
Sbjct:   12 DGELSAMAWESAIRGKSGREIAHLHQSWAAAFLARGSFNKAQ-EHLDHALEAWTGYDEPGLQARAWCLKASCSGEAGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIRAMSYQMTGNFLAACNEHEAAAKLAEQRQVHPLAPAFALGMETNFGI 205
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1438.2633.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LBS1_ECTSI5.950e-2939.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1438contigH-paniculata_contig1438:16949..18939 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-27_002920.1
Exons3
Model size609
Cds size609
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1438.2633.1prot_H-paniculata_contig1438.2633.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1438 16949..18939 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929143.7917435-CDS-H-paniculata_contig1438:16948..170931622929143.7917435-CDS-H-paniculata_contig1438:16948..17093Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1438 16949..17093 -
1691480748.2315185-CDS-H-paniculata_contig1438:16948..170931691480748.2315185-CDS-H-paniculata_contig1438:16948..17093Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1438 16949..17093 -
1622929143.8419707-CDS-H-paniculata_contig1438:17776..180961622929143.8419707-CDS-H-paniculata_contig1438:17776..18096Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1438 17777..18096 -
1691480748.2404375-CDS-H-paniculata_contig1438:17776..180961691480748.2404375-CDS-H-paniculata_contig1438:17776..18096Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1438 17777..18096 -
1622929143.862362-CDS-H-paniculata_contig1438:18795..189391622929143.862362-CDS-H-paniculata_contig1438:18795..18939Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1438 18796..18939 -
1691480748.2489393-CDS-H-paniculata_contig1438:18795..189391691480748.2489393-CDS-H-paniculata_contig1438:18795..18939Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1438 18796..18939 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1438.2633.1

>prot_H-paniculata_contig1438.2633.1 ID=prot_H-paniculata_contig1438.2633.1|Name=mRNA_H-paniculata_contig1438.2633.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=203bp
MDDGRKDEEYSEMAWAIAARGKSGREIGFLHETWANAQTARGVLDKAQQE
HLDKALEIWERYDDLSLVARTWCLKGSCSVESNDFMTAADSFKRAQKVAE
EVDDVPLVLCAMANRTICEIRRGEAKAAATHARRVFVKAADEANAEAIMV
SHCVRAASYQMGGNFSAACNEHEAAAKMISKGTVKSPDPDLLLAMDTNFG
IW*
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mRNA from alignment at H-paniculata_contig1438:16949..18939-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1438.2633.1 ID=mRNA_H-paniculata_contig1438.2633.1|Name=mRNA_H-paniculata_contig1438.2633.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1991bp|location=Sequence derived from alignment at H-paniculata_contig1438:16949..18939- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACGACGGCCGTAAAGATGAGGAGTACTCCGAAATGGCATGGGCGAT
TGCGGCAAGAGGGAAGAGTGGACGAGAGATAGGCTTTCTCCACGAGACTT
GGGCAAATGCACAGACGGCACGAGGTGTCCTCGATAAAGCTCAGGTATTA
CCACTATCTCGTGAAACGGCGCGACATGGGCTACACACGTACTTACGACG
TCGACAAGCAGGCGACAACATAGAGGCTATATATAACACTCGTTTACAAC
GGTTTTCAAGGTACTCGTAGAAAAGTGAGTAAACCAAGACCTGAACTCCA
TTTGCTAGACACAAATAAATTATCCAGATACGGTACGAACAGATCGACCA
ACATCTCCTGAATATATCCAGACAAAAATGTGATTATGACAAGGTTGACC
TACCCCTGTAGCAAGCTAGCCTAAGCTCGTGGACAACTACAACTGCTGTG
GACTTATGTCCGGTGTGAGGGCAGTCCGTAAATACATGTTGGGAGTTGCG
CGACTCAAATGCACGTTCACCCTCTCTATGATCGAAGACTATGACTATAA
AAGTAGCCACAACATCTGCCGAATTTGTTCCGAATATCCATATGTTCCTG
TCAACAGGAATAGGTGACGTTTTTCAGTGTGTGCCCCCGCAACACCCCAA
ATTGTTTCGTTCTTGTGATCATATTCTAGCTCTCGTGTTCATGGCTGTCC
CCTCGTCCATTCACAAAGTTTGTTTGCTCTATTTGAAACCTATGTAAGGT
CAAATATGTCGTACTGTATATTGCCAATCATGTACGCGATGCTTACACCT
GGGTAAGCCAGCGCTCTTCTCGCTGGACTCTCAACCCATCAAGCAGGAGC
ACCTTGACAAAGCGCTGGAGATATGGGAAAGATATGACGACCTGTCTCTC
GTAGCACGAACTTGGTGTCTCAAGGGTTCGTGTAGCGTCGAATCTAATGA
CTTCATGACAGCAGCCGATAGTTTCAAGCGAGCGCAGAAGGTCGCAGAGG
AGGTCGACGATGTGCCATTAGTGCTCTGCGCGATGGCGAATCGTACCATT
TGCGAGATTCGAAGAGGGGAAGCCAAAGCTGCCGCGACGCACGCGAGACG
TGTTTTCGTTAAAGCCGCCGACGAGGCCAACGCTGAAGCGATCATGGTCT
CTCATTGTGTAAGGTGATCTCGCCGAAATCCGCTGATTAACCCTGGTGCA
TTCGTTCAAACAAGGATTTTTGGTTTGCAGAATCAACACTTGACAAATTG
TGTGATATGAGTCCTCTCAAGCATTCTGTGTGCCAGCGCCAAGTTCAAGA
ACTAAGATCGATCGTACCAGCTTTTCAGCTCGTGTTCGTTGGTGGCGTAG
AAAGAGTTGAGAATAACACGCTTGCCCAAAATAAATCGACGATAAGTGCG
AAGTTTTTAATTCGTCCTACGATCAGGGATACCCTGTTTTTGGCATCAGG
GTCTCTCCTCCAAGGGTGGCAGTGTCTCGCCCCTCTCTTTGAGATCAATC
TCTTTGAGAAATACAGTACTCGCTCGTAAAAGTTGGCAAACGGCTCGACG
ACGTACATATCGAGGCAAGAAGCAGTATCACTGAGTTGACGCGGCAAAGA
CGTTTGTACCACCACCTATCGGAGCACGACTCAAGGGAGATGCCCCAGAG
CCGAGTAGTGTTTACAATCGTCCGATATTAATAATACCGTACGTGCACAT
CTAAGGTAGCCAACGCTTCCTTGCACGTGTCTGCTGAAAACGATCGTTTG
CGTTATGCTCAAGAATCACGGTTGAGCTACTGCTGCAAGTAGCACTTACT
GCATACTGTATTTCTTTCGTTTGATCGTTCTTTTTGTTGGTTCAAGAGCA
GCGAGTTACCAGATGGGAGGGAATTTCTCAGCTGCATGTAACGAGCATGA
GGCGGCGGCAAAGATGATATCGAAGGGTACTGTGAAGTCGCCAGACCCTG
ACCTTCTATTAGCCATGGATACTAACTTTGGCATTTGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig1438:16949..18939-

>mRNA_H-paniculata_contig1438.2633.1 ID=mRNA_H-paniculata_contig1438.2633.1|Name=mRNA_H-paniculata_contig1438.2633.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1218bp|location=Sequence derived from alignment at H-paniculata_contig1438:16949..18939- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACGACGGCCGTAAAGATGAGGAGTACTCCGAAATGGCATGGGCGAT
TGCGGCAAGAGGGAAGAGTGGACGAGAGATAGGCTTTCTCCACGAGACTT
GGGCAAATGCACAGACGGCACGAGGTGTCCTCGATAAAGCTCAGATGGAC
GACGGCCGTAAAGATGAGGAGTACTCCGAAATGGCATGGGCGATTGCGGC
AAGAGGGAAGAGTGGACGAGAGATAGGCTTTCTCCACGAGACTTGGGCAA
ATGCACAGACGGCACGAGGTGTCCTCGATAAAGCTCAGCAGGAGCACCTT
GACAAAGCGCTGGAGATATGGGAAAGATATGACGACCTGTCTCTCGTAGC
ACGAACTTGGTGTCTCAAGGGTTCGTGTAGCGTCGAATCTAATGACTTCA
TGACAGCAGCCGATAGTTTCAAGCGAGCGCAGAAGGTCGCAGAGGAGGTC
GACGATGTGCCATTAGTGCTCTGCGCGATGGCGAATCGTACCATTTGCGA
GATTCGAAGAGGGGAAGCCAAAGCTGCCGCGACGCACGCGAGACGTGTTT
TCGTTAAAGCCGCCGACGAGGCCAACGCTGAAGCGATCATGGTCTCTCAT
TGTGTAAGCAGGAGCACCTTGACAAAGCGCTGGAGATATGGGAAAGATAT
GACGACCTGTCTCTCGTAGCACGAACTTGGTGTCTCAAGGGTTCGTGTAG
CGTCGAATCTAATGACTTCATGACAGCAGCCGATAGTTTCAAGCGAGCGC
AGAAGGTCGCAGAGGAGGTCGACGATGTGCCATTAGTGCTCTGCGCGATG
GCGAATCGTACCATTTGCGAGATTCGAAGAGGGGAAGCCAAAGCTGCCGC
GACGCACGCGAGACGTGTTTTCGTTAAAGCCGCCGACGAGGCCAACGCTG
AAGCGATCATGGTCTCTCATTGTGTAAGAGCAGCGAGTTACCAGATGGGA
GGGAATTTCTCAGCTGCATGTAACGAGCATGAGGCGGCGGCAAAGATGAT
ATCGAAGGGTACTGTGAAGTCGCCAGACCCTGACCTTCTATTAGCCATGG
ATACTAACTTTGGCATTTGGTGAAGCAGCGAGTTACCAGATGGGAGGGAA
TTTCTCAGCTGCATGTAACGAGCATGAGGCGGCGGCAAAGATGATATCGA
AGGGTACTGTGAAGTCGCCAGACCCTGACCTTCTATTAGCCATGGATACT
AACTTTGGCATTTGGTGA
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