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Homology
BLAST of mRNA_H-paniculata_contig1438.2631.1 vs. uniprot
Match: A0A6H5KY55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY55_9PHAE) HSP 1 Score: 313 bits (801), Expect = 1.110e-96 Identity = 161/274 (58.76%), Postives = 202/274 (73.72%), Query Frame = 1
Query: 1 VNSYVKFAEEAIDGLCSPDVDTAKAYAILSMVYAWLDNKKLYAKNLKAAQKLVQIMEENGEELPLDLMDMMKEQERVLYLHYTEDFDLIRECIDDTPSKPPDMDPITACETGLFHMVRFYSDGVFKAFWRDVLAHDALLTETKIFAEKYLKDCMVIEKIAETRPGLKDTAGALYIRSAMQFVRLPLKTDPAESLKSTIELCRVIAQVPGMVRFGPVKHYVHCLLMGLARPAMAAQDKGAYEKLRSLYNGLDIKGELVPPPEEMDIAKLCRQPFC 822
V YVK AEEAIDGLC+ DV TAKAY I+SMVYAW DN L+AK L AQ+LV M+ + EE+P+ D+MKE ERV LHYTED D+I +C + +PP M + GLFHMVR+Y++GVFKAFWRD+ ++ L ET FA+K+ +C IE+IA +R LK++AG LYIR+AMQF+RLPLKT+PAE+LKSTI L +I QVPGMVR+GP+KHYVHCL+M L RPA+ DKG+YEKLR LYN LDI G + E+MD+A LC+ FC
Sbjct: 283 VRRYVKLAEEAIDGLCTEDVPTAKAYTIMSMVYAWQDNVALFAKYLGRAQELVDSMDAS-EEIPM-ASDIMKELERVRVLHYTEDEDVINKCCYEADGEPPTMTLAMMSDAGLFHMVRYYTNGVFKAFWRDLHKSNSDLPETTRFADKHRHECSAIEEIANSRERLKNSAGGLYIRAAMQFMRLPLKTNPAEALKSTIVLTDIICQVPGMVRYGPLKHYVHCLVMMLKRPAILGGDKGSYEKLRKLYNVLDIAGPDIEAAEDMDMAMLCKHQFC 554
BLAST of mRNA_H-paniculata_contig1438.2631.1 vs. uniprot
Match: D8LBT4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBT4_ECTSI) HSP 1 Score: 297 bits (760), Expect = 7.380e-93 Identity = 151/274 (55.11%), Postives = 193/274 (70.44%), Query Frame = 1
Query: 1 VNSYVKFAEEAIDGLCSPDVDTAKAYAILSMVYAWLDNKKLYAKNLKAAQKLVQIMEENGEELPLDLMDMMKEQERVLYLHYTEDFDLIRECIDDTPSKPPDMDPITACETGLFHMVRFYSDGVFKAFWRDVLAHDALLTETKIFAEKYLKDCMVIEKIAETRPGLKDTAGALYIRSAMQFVRLPLKTDPAESLKSTIELCRVIAQVPGMVRFGPVKHYVHCLLMGLARPAMAAQDKGAYEKLRSLYNGLDIKGELVPPPEEMDIAKLCRQPFC 822
V Y+K AEEA+DGLC+ DV TAKAY I++MVYAW DN L+A+ L AQKLV ++ + EE+P++L D+MKE ERV LHYTED D+I +C + +PP M + GLFHMVR+Y++GVFKAFWRD+ ++ L T TR GLK++AGALYIR+AMQF+RLPLKTDP E+LKST+ L ++I QVPGMVR+GP+KHYVHCL+M L RPA+ DKG+YEKLR LYN LDI G + E+MD+A LC+ FC
Sbjct: 171 VRRYIKLAEEAVDGLCTEDVPTAKAYTIMAMVYAWQDNSALFAEYLGRAQKLVDSLDAS-EEIPMELTDIMKELERVRVLHYTEDEDVIHKCCYEADGEPPTMTLAMLSDAGLFHMVRYYTNGVFKAFWRDLHEVNSDLPAT-------------------TREGLKNSAGALYIRAAMQFMRLPLKTDPVEALKSTVVLTKIICQVPGMVRYGPLKHYVHCLVMMLKRPAILGVDKGSYEKLRKLYNSLDIAGPNIEAAEDMDMAMLCKHQFC 424
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-27_002780.1 |
| Exons | 6 |
| Model size | 828 |
| Cds size | 828 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1438.2631.1 >prot_H-paniculata_contig1438.2631.1 ID=prot_H-paniculata_contig1438.2631.1|Name=mRNA_H-paniculata_contig1438.2631.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=276bp
VNSYVKFAEEAIDGLCSPDVDTAKAYAILSMVYAWLDNKKLYAKNLKAAQ
KLVQIMEENGEELPLDLMDMMKEQERVLYLHYTEDFDLIRECIDDTPSKP
PDMDPITACETGLFHMVRFYSDGVFKAFWRDVLAHDALLTETKIFAEKYL
KDCMVIEKIAETRPGLKDTAGALYIRSAMQFVRLPLKTDPAESLKSTIEL
CRVIAQVPGMVRFGPVKHYVHCLLMGLARPAMAAQDKGAYEKLRSLYNGL
DIKGELVPPPEEMDIAKLCRQPFCR* back to topmRNA from alignment at H-paniculata_contig1438:411..4774+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig1438.2631.1 ID=mRNA_H-paniculata_contig1438.2631.1|Name=mRNA_H-paniculata_contig1438.2631.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4364bp|location=Sequence derived from alignment at H-paniculata_contig1438:411..4774+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTAACTCTTACGTCAAGTTCGCTGAGGAGGCAATCGACGGTTTGTGCAG
CCCAGACGTGGACACCGCAAAGTGAGTTGACAAGACATCCCTTTGGAGGT
ACCACGAAGCATTGATGTATCTTTGATCTAACCGGCAAGCATGGCAACCT
GTAGAGCTTATCGATTCTGAGGGGGGGGGGGTAAGGAAGGGAAAGGGCGG
CATGTACACAAGAAGCCGGGGCAGTGGCCGCCGCCACCGTGTGTAAGCAT
CCCCAGAAAGTGGACTCTTGAGTTGGAAGCACTTTCATCGTTGCAATCGT
TGCAGTGCTTCGTATTACAATGGTCGTAGAAGCAACAGAAACGTGTGGCT
AAGTTGTGTTAGGGTTGCTTCCCTCCTCACAAGCCTGCTGTACTACTTTG
TTTCTTTTATTTTCCTTTTGATTTATTCCAGTCAGCCTTTGTGGTGGTCA
CTTCTTTCCGCCGTTCTCGCTCTCGCTCGTGTCTGTGTGTGTATGTATGT
GAATGTTTTTCATGTGTCCGTTTGCTTGTTTTCGGGTATTTTTCGCTCGC
AAGGGCGTACGCGATCTTGAGCATGGTGTACGCGTGGTTGGACAACAAGA
AGCTGTACGCCAAGAACCTCAAGGCGGCCCAGAAGCTGGTTCAGATAATG
GAGGAGAATGGTGAAGAGCTGCCGCTGGTGAGGCAACGGAGGGTGGGAGG
GGTGGGGCGGCGGCGCCGAGGGGCGATCGAGAAGCAAAAAACGAAGACGC
GAATATGAATTGATGCTGCGTACTTGGAATTGATGGATTTGGCCGCAGTG
CACAACAAATATTAAATGTACACGGAGCTCTCTAAAAAGCGCTTTATATA
TAATTTTTTAATGCCTTGATTACATTCTTATTTTTTTCAACTTGAGCGGG
AGTAAATAATGGATTTTTTCTCAAGGGGTAGAGGAAAAAAGTGTGTTTGG
ATGTTCTTCGTGATGCGAAGGTTTTAGTTCCGGTTGTTCTAGTCGCCAAG
TCATTGGTCAATGTGTTTACCGCCGTCTTCTTTTGCTCGGAGTTCCTGGC
TGGTGACAGTTTTGCTCATAGTGTATGCTGTTAGTGGGCGAGGACCATTC
TGTTCCTTATGCCTCTTGCAAAGGGCACGTAGAATTCAGAACTCGATTCA
TGGGATCTAGAGTTCGATTTCTCACGAACATAAACTCGTCAAGTGCATAA
GTCCTACCCAAGAAATCGAAAAATCTCTTCTATTTCCTCCTTTTTTTTTC
TCGCGTCTTGAAGTGAGGTTGTGGAGGTAAATGGGTTCGCCGGGATCAAA
GCATGTATATATATATATATATATATATCATGTATGTATGTATGTATGTA
TGTATGTATATATATATATATATATCATGTATATATATATGTATATATAT
ATATATATATATCATGTATGTATGTATGTATATATATATATATATATATC
ATGTATGTATGTATGTATATATATATATCATGTATGTATGTATGTATGTA
TTATATATATATATATATCATGTATGTATGTATGTATGTATATATATATA
TATATATTATGTATGTATGTATGTATGTATATATATATATATATCATGTA
TGTATGTATGTATATATATATATATATATATATATCATGTATGTATGTAT
GTATATATATATATATATATCATGTATGTATGTGTTCCAAAAACATATTT
CGGATGTCCCTCACCTCTTGACCTTCTGGTGTATGTTTATCGACGATGTC
TGTCTCGCGTGTGTCTCAACTCACTGCCATCGTGCTTTGTGTATCACCCG
TGCTCTGTGTTGTTCTTGCGAAGGACCTGATGGATATGATGAAGGAGCAG
GAGCGAGTGCTGTACTTGCACTACACGGAGGACTTTGACCTCATCCGAGA
ATGCATCGACGACACGCCCTCGAAGCCGCCGGACGTACGTGTGTTTGTGT
TTCTATCGTATTGTGGGTCGTTTTCACTTCTTTACAATATACTGCAGTAC
AGTGGAGAGACTACAGCTTTTCATTGTACTTGTAGCCAGCCGGTGCTTTG
TTGGTGTGCTTTTTTGTCCTTGCGAGACCTGCGCATATATAAGAACCAGG
AAAACGAAGTCTTCGCAACATGAAACTAGATATTTTTAATACAATTAAAT
GAGCTGACCGGAAAAAAATATGATTTTTTGTACATTCTACTTATTATTAC
AGGATAGAGGCGCAAGGTCCGAAAAGGAAGATTTTTTTTTTTTCAAGTAC
TTGAGGACAGAAGTGGGGATCCAAAGTTCCAAGGAAGATGCACTATCGTA
ACCTTAATCTGCACGTATGGCTACGCCCCGTGCAGTTTTGTTCTGTCCTC
GTACCGTGTTTAGTGGAAAGTCATCGCCCACGCACGAAGGGTTCACTACG
CTTGCATGTGCTCGCTGTCTTCTTCTATTTTGTTTTCGTTCTTGGAAATT
CATTGTGATCTGGTTTTTTTTTAATATAGGTGCAGAATGAACCGCGTATT
CGTGCGTAGACGCAGACAAATAAAGAGAAAATCTGAACGTTCTGGTTCTT
GTTGATACTCTCATGAGCAGTAGAGCTCTAGTATGATGTTCATATATTTA
TTTCACTGTGCTTCCGATCACCCTTCAGTATCATCTGAACATATCTGTGA
CTCTTCCGGTCCTCTAGTCGCCGGCCCCCGTGCTAGTTTAGTTACCCCTT
GCCCCCTTCCCCTCCCAATTTCAATTTCAATGAAACATACGAATAATCAC
AACCCTCATGTCAAAATATTTTGATGTAATTTGGGCGTTGGCTTGGCGCA
GATGGACCCCATTACGGCGTGTGAAACGGGGTTGTTCCATATGGTCCGCT
TTTACTCGGACGGAGTGTTCAAGGCCTTTTGGCGAGATGTGCTCGCCCAC
GATGCGCTCCTCACGGAGACCAAGATCTTCGCGGAGAAATACCTTAAGGA
TTGCATGGTCATCGAGAAAATTGCCGAAACTAGGTGTGTGCATGTGTGAA
TATTATTTTTTGCGGGGAGTGGGGGGGTAAGCGTCCGCCAAGCCTCAATG
GTGAGTCACTCCTCCTTTTGACGGTCGCCGCAGTCATTTTAGTAGGTTGA
TGAAGCTGGTACAAGATAGCTTGATTGCAACGATGTTGAGGTCAGTGTTT
CGGCCGACCTGAAGAGTTAGATACGGTCAATCGGGTGACCGTTTTTTGTC
TTCCCAAGTCTATGTTGATCTATAGTTTGGTGTGCTTCTGTGCTGAGGTT
AGTATCAATCATGACTAAATATTTTCATGAGAAACGGGAAAAACAAGTTG
GACAGGGGGAGGGGCGCGGGGGTGGGGAAGAAGGGTATAGATATAAAAAA
GTCTAGGATTATTACCGATCATGGAAAAGGTTGAAAAGGAAAATTTCAAT
GTGATACGATCAACGGCCCCGTTATCTGTTTGGGTTGGGTTTGGTTGCTC
CTTGTGTTGTGTTTGTTAGGCCTGGGCTAAAAGACACAGCCGGAGCCCTG
TACATCCGCTCCGCGATGCAGTTTGTACGGCTGCCGCTGAAGACAGACCC
GGCGGAATCGCTCAAAAGCACCATCGAGCTCTGTCGTGTCATCGCCCAGG
TGCCGGGCATGGTCCGCTTCGGCCCAGTGTGAGTCCTAGGAACAGTCTAT
TTACCCATTTATCGTGGTTTACAGGACATGTCACTCTCACTGGTGAAATA
TATGTTTCAAACTTCCTTTTCTTGAAGATGAGGGTTACCCGGGGGACCGA
ATAAAAGTCATGTCATTGGATAGCATCTTGTGTAGATTTATCATAAGACA
GATATGCTCGCTTGGAAGGTACAGGTTTTCTCTTCCGCTTCTCGAAAATA
TCGTGTTTAAACTCACGGGGGACTACGCCCGTGCATTTCGTGGGCTTCGT
CCTCAATCCTCCTACAGTGATTCGCTTGCCCTCACGACGTGGAGGGTCTC
GCGTCGCGAGCAAGACTCTTTGCACGCAAGGAGCTCGCTACTCTCGCACG
AAGATCCTTCCATCGACCGCGATGCCCGCCCCCCCGAGCACGAACAAAAT
AGAACACATGCCATCTATGACAAATAGCAACAAGAACAGAAGAGCAACAT
TCAATTACCACGACATGAAGGAATGGATCAAAACCAAGCTCTCTTATGGG
TGCATTTGTGCTACTTGCTCTGTTGTTTTGCAGCAAGCACTACGTGCACT
GCCTGCTCATGGGTCTCGCTCGACCGGCAATGGCGGCGCAAGATAAGGGC
GCGTACGAGAAGCTGCGTAGCTTGTACAACGGCCTGGACATCAAAGGGGA
ATTGGTGCCCCCTCCCGAGGAGATGGATATTGCCAAGCTGTGCCGGCAGC
CCTTCTGCCGGTGA back to topCoding sequence (CDS) from alignment at H-paniculata_contig1438:411..4774+ >mRNA_H-paniculata_contig1438.2631.1 ID=mRNA_H-paniculata_contig1438.2631.1|Name=mRNA_H-paniculata_contig1438.2631.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1656bp|location=Sequence derived from alignment at H-paniculata_contig1438:411..4774+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTAACTCTTACGTCAAGTTCGCTGAGGAGGCAATCGACGGTTTGTGCAG
CCCAGACGTGGACACCGCAAAGTTAACTCTTACGTCAAGTTCGCTGAGGA
GGCAATCGACGGTTTGTGCAGCCCAGACGTGGACACCGCAAAGGCGTACG
CGATCTTGAGCATGGTGTACGCGTGGTTGGACAACAAGAAGCTGTACGCC
AAGAACCTCAAGGCGGCCCAGAAGCTGGTTCAGATAATGGAGGAGAATGG
TGAAGAGCTGCCGCTGGGCGTACGCGATCTTGAGCATGGTGTACGCGTGG
TTGGACAACAAGAAGCTGTACGCCAAGAACCTCAAGGCGGCCCAGAAGCT
GGTTCAGATAATGGAGGAGAATGGTGAAGAGCTGCCGCTGGACCTGATGG
ATATGATGAAGGAGCAGGAGCGAGTGCTGTACTTGCACTACACGGAGGAC
TTTGACCTCATCCGAGAATGCATCGACGACACGCCCTCGAAGCCGCCGGA
CGACCTGATGGATATGATGAAGGAGCAGGAGCGAGTGCTGTACTTGCACT
ACACGGAGGACTTTGACCTCATCCGAGAATGCATCGACGACACGCCCTCG
AAGCCGCCGGACATGGACCCCATTACGGCGTGTGAAACGGGGTTGTTCCA
TATGGTCCGCTTTTACTCGGACGGAGTGTTCAAGGCCTTTTGGCGAGATG
TGCTCGCCCACGATGCGCTCCTCACGGAGACCAAGATCTTCGCGGAGAAA
TACCTTAAGGATTGCATGGTCATCGAGAAAATTGCCGAAACTAGATGGAC
CCCATTACGGCGTGTGAAACGGGGTTGTTCCATATGGTCCGCTTTTACTC
GGACGGAGTGTTCAAGGCCTTTTGGCGAGATGTGCTCGCCCACGATGCGC
TCCTCACGGAGACCAAGATCTTCGCGGAGAAATACCTTAAGGATTGCATG
GTCATCGAGAAAATTGCCGAAACTAGGCCTGGGCTAAAAGACACAGCCGG
AGCCCTGTACATCCGCTCCGCGATGCAGTTTGTACGGCTGCCGCTGAAGA
CAGACCCGGCGGAATCGCTCAAAAGCACCATCGAGCTCTGTCGTGTCATC
GCCCAGGTGCCGGGCATGGTCCGCTTCGGCCCAGTGCCTGGGCTAAAAGA
CACAGCCGGAGCCCTGTACATCCGCTCCGCGATGCAGTTTGTACGGCTGC
CGCTGAAGACAGACCCGGCGGAATCGCTCAAAAGCACCATCGAGCTCTGT
CGTGTCATCGCCCAGGTGCCGGGCATGGTCCGCTTCGGCCCAGTCAAGCA
CTACGTGCACTGCCTGCTCATGGGTCTCGCTCGACCGGCAATGGCGGCGC
AAGATAAGGGCGCGTACGAGAAGCTGCGTAGCTTGTACAACGGCCTGGAC
ATCAAAGGGGAATTGGTGCCCCCTCCCGAGGAGATGGATATTGCCAAGCT
GTGCCGGCAGCCCTTCTGCCGGTGACAAGCACTACGTGCACTGCCTGCTC
ATGGGTCTCGCTCGACCGGCAATGGCGGCGCAAGATAAGGGCGCGTACGA
GAAGCTGCGTAGCTTGTACAACGGCCTGGACATCAAAGGGGAATTGGTGC
CCCCTCCCGAGGAGATGGATATTGCCAAGCTGTGCCGGCAGCCCTTCTGC
CGGTGA back to top
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