mRNA_H-paniculata_contig14368.2626.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14368.2626.1
Unique NamemRNA_H-paniculata_contig14368.2626.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig14368.2626.1 vs. uniprot
Match: A0A6H5KW66_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW66_9PHAE)

HSP 1 Score: 411 bits (1056), Expect = 3.790e-134
Identity = 227/353 (64.31%), Postives = 259/353 (73.37%), Query Frame = 1
Query:  163 QKHEDDNEISGDGQAAFRELNLNYNKVTDEVIRATMEELVNTPMEPGQNPDDYFNQKHLLRHKVQKMGETISDRYFKDI*VTEFTDEYKDVKMIMYRDPDFNVDQMQTTMRHMFLDEQSRKGSKGGIAGRGFAMATTTSG--TCFECGENGHIRRNCPRKRGKGRMQRTKPAGAAKWCSVHFTTKHSDEECYEQGAKRPEKSNDTGKAFSACTHXXXXSSASYKKGPA-TAKESSSKKSAIDFSADGDESDEEFMYATTHNGKEVKVNTAGAT------------------------------------------LLVDTGATETMLDDRLIPDLKEIMQEYKQLVKPKAITV 1086
            QKHEDD++ISGDGQAAF+ELNLNYNKVTDEVIRATMEEL+NTPMEP QNPDDYFNQKHLLRHK +KMGETISD YF D  VT FT+EYKDVKMIMYRDPDFNVD+MQTTMRHMFLDEQSR G KG IAGRGFAM  TTS   TCF+CGE GHI RNC  KRGKG+ ++TKPAGAAKWCSVHFTT+HSDEEC+EQGA RP+KS++TGKA SAC       S S K   A T +E+SS ++ IDFSA+G ES+E FMYA  H G+++K    GAT                                          LL+DTGA+E MLDD LIP LKEIM+E+K+L KPK ++V
Sbjct:   81 QKHEDDSKISGDGQAAFQELNLNYNKVTDEVIRATMEELINTPMEPRQNPDDYFNQKHLLRHKAEKMGETISDCYFNDECVTGFTNEYKDVKMIMYRDPDFNVDKMQTTMRHMFLDEQSRNGPKGSIAGRGFAMTATTSEEPTCFDCGEKGHIWRNCSEKRGKGK-KKTKPAGAAKWCSVHFTTRHSDEECFEQGATRPKKSSNTGKALSACASCTHCFSTSNKTELAMTKQEASSTQAEIDFSAEG-ESEEGFMYAIVHKGEDLKPMATGATPLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLIDTGASENMLDDCLIPGLKEIMREHKELAKPKVVSV 431          
BLAST of mRNA_H-paniculata_contig14368.2626.1 vs. uniprot
Match: D7G6Q1_ECTSI (CCHC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Q1_ECTSI)

HSP 1 Score: 353 bits (905), Expect = 1.750e-118
Identity = 187/260 (71.92%), Postives = 205/260 (78.85%), Query Frame = 1
Query:  268 MEELVNTPMEPGQNPDDYFNQKHLLRHKVQKMGETISDRYFKDI*VTEFTDEYKDVKMIMYRDPDFNVDQMQTTMRHMFLDEQSRKGSKGGIAGRGFAMATTTSG--TCFECGENGHIRRNCPRKRGKGRMQRTKPAGAAKWCSVHFTTKHSDEECYEQGAKRPEKSN-DTGKAFSACTHXXXXSSASYKKGPATAKESSSKKSAIDFSADGDESDEEFMYATTHNGKEVKVNTAGATLLVDTGATETMLDDRLIPDLKE 1038
            ME+L NT MEPGQNPDDYFN KHLLRHKV+KMGE ISDRYFKD+ VT FT EYK+VKMIM+RDP+FNV+ MQTTM HM LDEQSRKGSKGGIAGRGF M TT S   TCF CGE GHIRRNC ++RGKGR ++TKPAGA KWC  HFTTK+SDEECY QGAKRP      T KAFSAC H    SS S +K   TAKE+SS K+AID S DGDESDE FMYATT  G EV+ N  G TLLV+ GATETM DDRLIP LK+
Sbjct:    1 MEKLDNTSMEPGQNPDDYFNHKHLLRHKVEKMGEKISDRYFKDMCVTGFTHEYKNVKMIMHRDPNFNVNHMQTTMHHMALDEQSRKGSKGGIAGRGFPMVTTASEQETCFGCGEKGHIRRNCLQRRGKGRQRKTKPAGATKWCCFHFTTKNSDEECYGQGAKRPITDQISTDKAFSACAHCAHFSSTSDRKELTTAKEASSTKAAIDSSTDGDESDEGFMYATTRTGMEVEANAEGVTLLVEIGATETMRDDRLIPHLKD 260          
BLAST of mRNA_H-paniculata_contig14368.2626.1 vs. uniprot
Match: A0A6H5L580_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L580_9PHAE)

HSP 1 Score: 327 bits (838), Expect = 6.610e-103
Identity = 180/311 (57.88%), Postives = 224/311 (72.03%), Query Frame = 1
Query:  163 QKHEDDNEISGDGQAAFRELNLNYNKVTDEVIRATMEELVNTPMEPGQNPDDYFNQKHLLRHKVQKMGETISDRYFKDI*VTEFTDEYKDVKMIMYRDPDFNVDQMQTTMRHMFLDEQSRKGSKGGIAGRGFAMATTTSGT-CFECGENGHIRRNCPRKRGKGRMQRTKPAGAAKWCSVHFTTKHSDEECYEQGAKRPEKSNDTGKAFSACTHXXXXSSASYKKGPATAKESSSKKSAIDFSADGDESDEEFMYATTH--NGKEVKVNTAGATLLVDTGATETMLDDRLIPDLKEIMQEYKQLVKPKAITV 1086
            QKHEDD  ISGDGQAAF EL  NY++VTDEVIRA MEEL N PM PG+NPDDYFNQKHLLR ++ KMGE ISDR FKDI V  F+DEYKDVK++++RDP FNV  M +TMR++FLDEQSRKG KG IAGRGFAMATT S   C  C E GHIRRNCP+ + + + ++TKPAGA KWCS H TT HSDEECY+QG KRPE + D+ K F+AC++    SSAS K       +S+++ + +DF+ D D  D  FM+AT    +G+    ++ G  L+VD+ A+ETM D+RLIPD    + +Y Q   PK + V
Sbjct:  121 QKHEDDTGISGDGQAAFEELCNNYDRVTDEVIRAKMEELENNPMNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDPTFNVLDMLSTMRNIFLDEQSRKGWKGRIAGRGFAMATTASDIICHSCYEPGHIRRNCPKIKNRAK-KKTKPAGATKWCSKHNTTSHSDEECYQQGGKRPEDTKDSNKVFTACSNCTHCSSASKKD------DSNNEVAVVDFTRDEDAFDSGFMFATCSRISGRNFAASSTGVRLVVDSEASETMFDNRLIPDGN--LHDYTQRNSPKIVDV 422          
BLAST of mRNA_H-paniculata_contig14368.2626.1 vs. uniprot
Match: A0A6H5KJB9_9PHAE (Uncharacterized protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJB9_9PHAE)

HSP 1 Score: 325 bits (834), Expect = 6.800e-102
Identity = 178/299 (59.53%), Postives = 219/299 (73.24%), Query Frame = 1
Query:  166 KHEDDNEISGDGQAAFRELNLNYNKVTDEVIRATMEELVNTPMEPGQNPDDYFNQKHLLRHKVQKMGETISDRYFKDI*VTEFTDEYKDVKMIMYRDPDFNVDQMQTTMRHMFLDEQSRKGSKGGIAGRGFAMATTTSGT-CFECGENGHIRRNCPRKRGKG-RMQRTKPAGAAKWCSVHFTTKHSDEECYEQGAKRPEKSNDTGKAFSACTHXXXXSSAS---YKKGPAT---AKESSSKKSAIDFSADGDESDEEFMYATT---HNGKEVKVNTAGATLLVDTGATETMLDDRLIPD 1029
            KHEDD  +SGDGQAAF EL  NYN+VTDEVIRA +++L  T MEPG+NPDD+FN+KH LR +++KMGETISDR FKDI V  F+++YKD+KM+++RDP F+V QMQ TMR++FLDEQ RK +KG IAGRGFAMAT TSG  CFEC E GH+RRNCP ++ +G R ++TKPAGA KWCSVH TT HSDEECY QGAKRPE+   TGKAFSACTH    S+ S   + K   T    +   ++K+ IDFS D D     FMY  T    +G+       G + LVD+GA+ETM DDRLIP+
Sbjct:  102 KHEDDTGLSGDGQAAFAELKANYNRVTDEVIRAKLDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTSGPICFECNEPGHVRRNCPNRQREGHRAKKTKPAGATKWCSVHNTTTHSDEECYNQGAKRPER---TGKAFSACTHCVHCSTQSRDTHAKPTTTETPTETEKTEKAEIDFSYDEDAFKGGFMYHATCSKGSGRTFTTTATGTSALVDSGASETMFDDRLIPN 397          
BLAST of mRNA_H-paniculata_contig14368.2626.1 vs. uniprot
Match: A0A6H5KN28_9PHAE (Uncharacterized protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN28_9PHAE)

HSP 1 Score: 321 bits (822), Expect = 2.870e-101
Identity = 178/299 (59.53%), Postives = 219/299 (73.24%), Query Frame = 1
Query:  166 KHEDDNEISGDGQAAFRELNLNYNKVTDEVIRATMEELVNTPMEPGQNPDDYFNQKHLLRHKVQKMGETISDRYFKDI*VTEFTDEYKDVKMIMYRDPDFNVDQMQTTMRHMFLDEQSRKGSKGGIAGRGFAMATTTSGT-CFECGENGHIRRNCPRKRGKG-RMQRTKPAGAAKWCSVHFTTKHSDEECYEQGAKRPEKSNDTGKAFSACTHXXXXSSASYKKGPATAKESSSK------KSAIDFSADGDESDEEFMY---ATTHNGKEVKVNTAGATLLVDTGATETMLDDRLIPD 1029
            KHEDD  +SGDGQAAF EL  NYN+VTDEVIRA +++L  T MEPG+NPDD+FN+KH LR +++KMGETISDR FKDI V  F+++YKD+KM+++RDP F+V QMQ TMR++FLDEQ RK +KG IAGRGFAMAT TSG  CFEC E GH+RRNCP ++ +G R ++TKPAGA KWCSVH TT HSDEECY QGAKRPE+   TGKAFSACTHXXXX + S        K  + K      K+ +DFS D D     FMY    +  +G+       G + LVD+GA+ETM D+RLIP+
Sbjct:  102 KHEDDTGLSGDGQAAFAELKANYNRVTDEVIRAKLDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTSGPICFECNEPGHVRRNCPNRQREGHRAKKTKPAGATKWCSVHNTTTHSDEECYNQGAKRPER---TGKAFSACTHXXXXXTQSRDTHAKPTKRETPKETEKTEKAEVDFSYDEDTFKGGFMYHAICSKGSGRTFTTTATGTSALVDSGASETMFDNRLIPN 397          
BLAST of mRNA_H-paniculata_contig14368.2626.1 vs. uniprot
Match: A0A6H5KXR7_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXR7_9PHAE)

HSP 1 Score: 307 bits (786), Expect = 5.700e-99
Identity = 174/312 (55.77%), Postives = 217/312 (69.55%), Query Frame = 1
Query:  163 QKHEDDNEISGDGQAAFRELNLNYNKVTDEVIRATMEELVNTPMEPGQNPDDYFNQKHLLRHKVQKMGETISDRYFKDI*VTEFTDEYKDVKMIMYRDPDFNVDQMQTTMRHM-FLDEQSRKGSKGGIAGRGFAMATTTSGT-CFECGENGHIRRNCPRKRGKGRMQRTKPAGAAKWCSVHFTTKHSDEECYEQGAKRPEKSNDTGKAFSACTHXXXXSSASYKKGPATAKESSSKKSAIDFSADGDESDEEFMYATTHNGKE--VKVNTAGATLLVDTGATETMLDDRLIPDLKEIMQEYKQLVKPKAITV 1086
            QKHEDD  ISGDGQAAF EL  NY++VTDEVIRA MEEL N PM PG+NPDDYFNQKHL+R ++ KMGE ISDR  KDI V  F+DEY+DVK++++RDP FN   MQ+T+R+  + +EQSRKG KG IAGRGFAMATT S   C  C E GHIRRNCP+ + + + ++TKPAGA KWC  H TT HSDEECY+QG KRPE + D+ KAF+AC+     SSA  K       +S+++ +  DF+ D D  D  FM+ T     E     ++ G+ LLVDTGA+ETM D+RLIPD    + +Y Q   PK + V
Sbjct:   61 QKHEDDTGISGDGQAAFEELCNNYDRVTDEVIRAKMEELENNPMNPGENPDDYFNQKHLIRAQLDKMGEPISDRRCKDIWVQGFSDEYRDVKLMVFRDPTFNALGMQSTIRNTSWTNEQSRKGWKGRIAGRGFAMATTASDIICHSCYEPGHIRRNCPKIKNRAK-KKTKPAGATKWCCKHNTTSHSDEECYQQGGKRPEDTKDSSKAFTACSDCTHCSSAPNKN------DSNNEVAVADFTRDEDAFDSGFMFGTCSRISERNFAASSTGSILLVDTGASETMFDNRLIPDGN--LHDYTQRNSPKIVDV 363          
BLAST of mRNA_H-paniculata_contig14368.2626.1 vs. uniprot
Match: A0A6H5K3T5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3T5_9PHAE)

HSP 1 Score: 325 bits (832), Expect = 8.360e-99
Identity = 180/299 (60.20%), Postives = 219/299 (73.24%), Query Frame = 1
Query:  166 KHEDDNEISGDGQAAFRELNLNYNKVTDEVIRATMEELVNTPMEPGQNPDDYFNQKHLLRHKVQKMGETISDRYFKDI*VTEFTDEYKDVKMIMYRDPDFNVDQMQTTMRHMFLDEQSRKGSKGGIAGRGFAMATTTSGT-CFECGENGHIRRNCPRKRGKG-RMQRTKPAGAAKWCSVHFTTKHSDEECYEQGAKRPEKSNDTGKAFSACTHXXXXSSAS--YKKGPATA---KESSSKKSA-IDFSADGDESDEEFMYATT---HNGKEVKVNTAGATLLVDTGATETMLDDRLIPD 1029
            KHEDD  +SGDGQAAF EL  NYN+VTDEVIRA +++L  T MEPG+NPDD+FN+KH LR +++KMGETISDR FKDI V  F+++YKD+KM+++RDP F+V QMQ TMR++FLDEQ RK +KG IAGRGFAMAT TSG  CFEC E GH+RRNCP ++ +G R ++TKPAGA KWCSVH TT HSDEECY QGAKRPE+   TGKAFSACTH    S+ S   +  P T    KE+   + A IDFS D D     FMY  T    +G+       G + LVD+GA+ETM DDRLIP+
Sbjct:  102 KHEDDTGLSGDGQAAFAELKANYNRVTDEVIRAKLDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTSGPICFECNEPGHVRRNCPNRQREGHRAKKTKPAGATKWCSVHNTTTHSDEECYNQGAKRPER---TGKAFSACTHCVHCSTQSRDIQAKPTTTEIPKETEKTEQAEIDFSYDEDAFKGGFMYHATCSKGSGRTFTTTATGTSALVDSGASETMFDDRLIPN 397          
BLAST of mRNA_H-paniculata_contig14368.2626.1 vs. uniprot
Match: A0A6H5JC59_9PHAE (gag_pre-integrs domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC59_9PHAE)

HSP 1 Score: 320 bits (819), Expect = 3.120e-98
Identity = 182/299 (60.87%), Postives = 223/299 (74.58%), Query Frame = 1
Query:  166 KHEDDNEISGDGQAAFRELNLNYNKVTDEVIRATMEELVNTPMEPGQNPDDYFNQKHLLRHKVQKMGETISDRYFKDI*VTEFTDEYKDVKMIMYRDPDFNVDQMQTTMRHMFLDEQSRKGSKGGIAGRGFAMATTTSGTC-FECGENGHIRRNCPRKRGKG-RMQRTKPAGAAKWCSVHFTTKHSDEECYEQGAKRPEKSNDTGKAFSACTHXXXXSSAS---YKKGPATA--KE-SSSKKSAIDFSADGDESDEEFMYATTHN---GKEVKVNTAGATLLVDTGATETMLDDRLIPD 1029
            KHEDD  +SGDGQAAF EL  NYN+VTDEVIRA +++L  T MEPG+NPDD+FN+KH LR +++KMGETISDR FKDI V  F+++YKD+KM+++RDP F+V QMQ TMR++FLDEQ RK +KG IAGRGFAMAT TSG   FEC E GH+RRNCP ++ +G R ++TKPAGA KWCSVH TT HSDEECY QGAKRPE+   TGKAFSACTHXXXXS+ S   + K   T   KE   ++K+ IDFS D D     FMY  T +   G+       G + LVD+GA+ETM D+RLIP+
Sbjct:  102 KHEDDTGLSGDGQAAFAELKANYNRVTDEVIRAKLDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTSGPIYFECNEQGHVRRNCPNRQREGHRAKKTKPAGATKWCSVHNTTTHSDEECYNQGAKRPER---TGKAFSACTHXXXXSTQSRDTHSKPTTTETPKEIEKTEKAEIDFSYDEDAFKGGFMYHATCSKAGGRTFTTTATGTSALVDSGASETMFDNRLIPN 397          
BLAST of mRNA_H-paniculata_contig14368.2626.1 vs. uniprot
Match: A0A6H5L1Z9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1Z9_9PHAE)

HSP 1 Score: 323 bits (827), Expect = 4.790e-98
Identity = 179/299 (59.87%), Postives = 219/299 (73.24%), Query Frame = 1
Query:  166 KHEDDNEISGDGQAAFRELNLNYNKVTDEVIRATMEELVNTPMEPGQNPDDYFNQKHLLRHKVQKMGETISDRYFKDI*VTEFTDEYKDVKMIMYRDPDFNVDQMQTTMRHMFLDEQSRKGSKGGIAGRGFAMATTTSGT-CFECGENGHIRRNCPRKRGKG-RMQRTKPAGAAKWCSVHFTTKHSDEECYEQGAKRPEKSNDTGKAFSACTHXXXXSSAS--YKKGPATA---KESSSKKSA-IDFSADGDESDEEFMYATT---HNGKEVKVNTAGATLLVDTGATETMLDDRLIPD 1029
            KHEDD  +SGDGQAAF EL  NYN+VTDEVIRA +++L  T MEPG+NPDD+FN+KH LR +++KMGETISDR FKDI V  F+++YKD+KM+++RDP F+V QMQ TMR++FLDEQ RK +KG IAGRGFAMAT TSG  CFEC E GH+RRNCP ++ +G R ++TKPAGA KWCSVH TT HSDEECY QGAKRPE+   TGKAFSACTH    S+ S   +  P T    KE+   + A IDFS D D     FMY  T    +G+       G + LVD+GA+ETM D+RLIP+
Sbjct:  102 KHEDDTGLSGDGQAAFAELKANYNRVTDEVIRAKLDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTSGPICFECNEPGHVRRNCPNRQREGHRAKKTKPAGATKWCSVHNTTTHSDEECYNQGAKRPER---TGKAFSACTHCVHCSTQSRDIQAKPTTTEIPKETEKTEQAEIDFSYDEDAFKGGFMYHATCSKGSGRTFTTTATGTSALVDSGASETMFDNRLIPN 397          
BLAST of mRNA_H-paniculata_contig14368.2626.1 vs. uniprot
Match: A0A6H5JUN9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUN9_9PHAE)

HSP 1 Score: 318 bits (816), Expect = 9.790e-97
Identity = 176/299 (58.86%), Postives = 219/299 (73.24%), Query Frame = 1
Query:  166 KHEDDNEISGDGQAAFRELNLNYNKVTDEVIRATMEELVNTPMEPGQNPDDYFNQKHLLRHKVQKMGETISDRYFKDI*VTEFTDEYKDVKMIMYRDPDFNVDQMQTTMRHMFLDEQSRKGSKGGIAGRGFAMATTTSGT-CFECGENGHIRRNCPRKRGKG-RMQRTKPAGAAKWCSVHFTTKHSDEECYEQGAKRPEKSNDTGKAFSACTHXXXXSSAS---YKKGPATA--KESS-SKKSAIDFSADGDESDEEFMYATT---HNGKEVKVNTAGATLLVDTGATETMLDDRLIPD 1029
            KHEDD  + GDGQAAF EL  NYN++TDE IRA +++L  T MEPG+NPDD+FN+KH LR +++KMGETISDR FKDI V  F+++YKD+KM+++RDP F+V QMQ TMR++FLDEQ RK +KG IAGRGFAMAT TSG  CFEC E GH+RRNCP ++ +G R ++TKPAGA KWCSVH TT HSDEECY QGAKRPE+   TGKAFSACTH    S+ S   + K   T   KE+  ++K+ IDFS D D     FMY  T    +G+       G + LVD+GA+ETM D+RLIP+
Sbjct:  121 KHEDDTGLCGDGQAAFAELKANYNRLTDEAIRAELDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTSGPICFECNEPGHVRRNCPNRQREGHRAKKTKPAGATKWCSVHNTTTHSDEECYNQGAKRPER---TGKAFSACTHCVHCSTQSRDIHAKPTTTEIPKETEKTEKAEIDFSYDEDAFKGGFMYHATCSKGSGRTFTTTATGTSALVDSGASETMFDNRLIPN 416          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14368.2626.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KW66_9PHAE3.790e-13464.31CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
D7G6Q1_ECTSI1.750e-11871.92CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L580_9PHAE6.610e-10357.88CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KJB9_9PHAE6.800e-10259.53Uncharacterized protein (Fragment) n=2 Tax=Ectocar... [more]
A0A6H5KN28_9PHAE2.870e-10159.53Uncharacterized protein (Fragment) n=3 Tax=Ectocar... [more]
A0A6H5KXR7_9PHAE5.700e-9955.77CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K3T5_9PHAE8.360e-9960.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JC59_9PHAE3.120e-9860.87gag_pre-integrs domain-containing protein (Fragmen... [more]
A0A6H5L1Z9_9PHAE4.790e-9859.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUN9_9PHAE9.790e-9758.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14368contigH-paniculata_contig14368:4297..6221 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size1088
Cds size135
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14368.2626.1prot_H-paniculata_contig14368.2626.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14368 4983..5117 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929142.6552408-UTR-H-paniculata_contig14368:4296..49821622929142.6552408-UTR-H-paniculata_contig14368:4296..4982Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14368 4297..4982 -
1691480747.825832-UTR-H-paniculata_contig14368:4296..49821691480747.825832-UTR-H-paniculata_contig14368:4296..4982Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14368 4297..4982 -
1622929142.7591863-UTR-H-paniculata_contig14368:5117..52191622929142.7591863-UTR-H-paniculata_contig14368:5117..5219Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14368 5118..5219 -
1691480747.8424327-UTR-H-paniculata_contig14368:5117..52191691480747.8424327-UTR-H-paniculata_contig14368:5117..5219Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14368 5118..5219 -
1622929142.7725296-UTR-H-paniculata_contig14368:6056..62211622929142.7725296-UTR-H-paniculata_contig14368:6056..6221Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14368 6057..6221 -
1691480747.8498404-UTR-H-paniculata_contig14368:6056..62211691480747.8498404-UTR-H-paniculata_contig14368:6056..6221Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14368 6057..6221 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929142.6695173-CDS-H-paniculata_contig14368:4982..51171622929142.6695173-CDS-H-paniculata_contig14368:4982..5117Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14368 4983..5117 -
1691480747.8349707-CDS-H-paniculata_contig14368:4982..51171691480747.8349707-CDS-H-paniculata_contig14368:4982..5117Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14368 4983..5117 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14368.2626.1

>prot_H-paniculata_contig14368.2626.1 ID=prot_H-paniculata_contig14368.2626.1|Name=mRNA_H-paniculata_contig14368.2626.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=45bp
MEELVNTPMEPGQNPDDYFNQKHLLRHKVQKMGETISDRYFKDI*
back to top

mRNA from alignment at H-paniculata_contig14368:4297..6221-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14368.2626.1 ID=mRNA_H-paniculata_contig14368.2626.1|Name=mRNA_H-paniculata_contig14368.2626.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1925bp|location=Sequence derived from alignment at H-paniculata_contig14368:4297..6221- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGACAAGACGACGAGTTTAGCAACCGGGCCTTCCAGGTACACCAGACT TTTGTACGTCCGACAGCAGCGAAGGTTCAGGACGGACGATTCAAGTTTCG GTTCGGAGATCAACAAGAAGATACGGGGTCGAGTCAGGACAGACGAGCTC GACTCAGGAAGACAAGTAAGAGGAATACGGTCTCACGCACACACACAGGG CCTTCACAACACACACCTAATCTGGTAGTGGGAGGAGCCCCTTTAGTGCT GTAGTCACCAACACTTCCCTTGGAGAAAAAGGCTCGCAAATCGAGCAAAG GACTGCTGTATCGATGGCAGGGAGGACTGCTGTATCGACAGCAGGGACGG TCCACACCGCAGTCCTATACACCCATCCGCGAGGAGAGGGTAACAGGAGC GGGGCCGGGAAGAAGACGACCTACAACCGTAGTCCTATACACCGATCCGA GAGGAGAGGGTAGCAGGAACGGGGTCGGGACGGTCCACACCGTAGTCCTA TACACCCATCCGCGAGGAGAGGGTAACAAGAGCGGGGTCGGGAAAAGACG ACCTCAACCGTAGTCCTTTGCACAGGAACGGGGTCGGGAAGCCTCAGGCT CACACCACGAGCAAACAACTCCTACGACAGGAGGGATCGCTGCGACAGCA GGAAACACCAGCATCAGCCTGTACACCACAAGGTAACAGGAGCGCATCGC GATAGGAAAGGCACATCAAGATGGGTGATAATCTCCCCGTCGACAACACC ACTAACCTCGCCAACACCATTCAAGGACTGAAGAAGTTCGATGGAAGGAA CCCAGCCGAATTCAATGGTTGGATGAAGAAGCTCTGCGTCGTCCTGGGAG TTACACGCAGGGACATTCTCCCGCTGCTTAAAGACGAACGCAGGCCTGCC CAAACGGATACTGCTGCCTACGCCGCCTACTGCAAGTCGAACGAGGACTT GTACGCCATACTCTACTTGCTAGTGGAACTACCGGCGGCCCTTTCGGTGC AGAAGCACGAGGATGACAACGAGATCAGCGGAGACGGACAGGCGGCCTTC AGGGAACTGAACCTGAACTACAACAAGGTTACGGACGAAGTGATTCGAGC CACCATGGAGGAGCTGGTCAACACGCCCATGGAGCCAGGACAGAACCCGG ACGACTACTTCAATCAGAAGCACCTCCTTCGACACAAGGTCCAGAAGATG GGGGAGACCATCTCGGACCGCTACTTCAAGGATATATGAGTCACAGAATT CACCGACGAGTACAAGGACGTGAAGATGATCATGTACCGCGACCCAGACT TTAACGTCGACCAGATGCAGACCACCATGCGGCACATGTTTCTGGACGAA CAATCTCGCAAAGGATCCAAAGGTGGCATTGCCGGCCGCGGCTTCGCCAT GGCCACAACCACATCGGGGACCTGTTTCGAATGCGGCGAGAATGGACACA TCCGCAGGAACTGCCCCCGAAAGAGAGGCAAGGGAAGAATGCAGAGGACC AAGCCGGCGGGAGCCGCCAAGTGGTGCTCCGTTCACTTCACGACCAAACA CTCCGACGAAGAATGCTACGAGCAAGGAGCGAAGCGGCCGGAAAAATCGA ACGACACGGGCAAGGCTTTCTCGGCATGTACGCACTGCACGCACTGCTCT TCAGCTAGCTACAAGAAGGGGCCAGCCACTGCGAAGGAGTCGAGCAGCAA GAAATCCGCAATCGACTTTAGTGCGGACGGCGACGAGTCCGATGAAGAAT TCATGTACGCCACCACTCATAACGGCAAGGAAGTCAAAGTCAACACTGCA GGAGCCACCCTACTTGTAGACACCGGCGCAACAGAGACCATGCTCGACGA CCGCCTCATCCCAGACCTGAAGGAGATCATGCAAGAGTACAAGCAACTCG TGAAGCCGAAGGCCATCACGGTTGC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig14368:4297..6221-

>mRNA_H-paniculata_contig14368.2626.1 ID=mRNA_H-paniculata_contig14368.2626.1|Name=mRNA_H-paniculata_contig14368.2626.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=270bp|location=Sequence derived from alignment at H-paniculata_contig14368:4297..6221- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGAGCTGGTCAACACGCCCATGGAGCCAGGACAGAACCCGGACGA
CTACTTCAATCAGAAGCACCTCCTTCGACACAAGGTCCAGAAGATGGGGG
AGACCATCTCGGACCGCTACTTCAAGGATATATGAATGGAGGAGCTGGTC
AACACGCCCATGGAGCCAGGACAGAACCCGGACGACTACTTCAATCAGAA
GCACCTCCTTCGACACAAGGTCCAGAAGATGGGGGAGACCATCTCGGACC
GCTACTTCAAGGATATATGA
back to top