mRNA_H-paniculata_contig14359.2622.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14359.2622.1
Unique NamemRNA_H-paniculata_contig14359.2622.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14359.2622.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14359contigH-paniculata_contig14359:356..1280 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size385
Cds size384
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929142.420374-CDS-H-paniculata_contig14359:356..6621622929142.420374-CDS-H-paniculata_contig14359:356..662Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14359 357..662 -
1691480747.6978712-CDS-H-paniculata_contig14359:356..6621691480747.6978712-CDS-H-paniculata_contig14359:356..662Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14359 357..662 -
1622929142.4300363-CDS-H-paniculata_contig14359:1202..12801622929142.4300363-CDS-H-paniculata_contig14359:1202..1280Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14359 1203..1280 -
1691480747.7154653-CDS-H-paniculata_contig14359:1202..12801691480747.7154653-CDS-H-paniculata_contig14359:1202..1280Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14359 1203..1280 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14359.2622.1prot_H-paniculata_contig14359.2622.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14359 357..1280 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14359.2622.1

>prot_H-paniculata_contig14359.2622.1 ID=prot_H-paniculata_contig14359.2622.1|Name=mRNA_H-paniculata_contig14359.2622.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=128bp
PVAVGCSTAITVTEGIPGCSMGWPTLDPRLRLEPTACYSVLRRREASDPT
LLPFPPTPATKSDKNRNSSTRQNRSDNSSSHERCVTFAKDANVREDKRST
SSTNIAESAKGEAEKVVALMGMVAMHEG
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mRNA from alignment at H-paniculata_contig14359:356..1280-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14359.2622.1 ID=mRNA_H-paniculata_contig14359.2622.1|Name=mRNA_H-paniculata_contig14359.2622.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=925bp|location=Sequence derived from alignment at H-paniculata_contig14359:356..1280- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCAGTGGCAGTGGGGTGTTCAACTGCTATCACCGTTACCGAGGGGATACC
GGGCTGCTCTATGGGATGGCCTACTCTGGTACGTTTTTCAGACACTGCAC
CAAGTCTCGGGGTTTAACTTCTATTGTGGAATAGGATAATTGCATGTTGT
TGCTGTAGACTGACCTCGTGCAACCGCACGACTGGTTTTAAAAGATACAG
GAACCACGAAAGGAAGCACAGTCAATGCCGGACGGTCGGGTAGCAAAGAG
AGAAGAGATGCCATTTGGTGTATAAACAGCTATTTTTCTCGACATAATTG
ATCCAGTGTGCAGTTAGTGCGTTGGCAGGCACGCAGCAACACTCATGATC
AGCGAATGAAGGACTATTCACATTTGATTGTAATCAGCGTGTCCCTGCCT
GTATCGTCACTCAATACAACCTAACCAGCATGACTGCTGCTCAGTGAAAG
TACTGCCCCACTGGAGTGCAGTTGAGCTGGAAAGTTGCACTGCAGCCGAC
GATGTGAAACGTGGGGTTCTTCTTGTTTCGTAACTGTCAGTAGTGCAAGG
CATGAATGCGACACCTTAGCCCCGAACCAAACTCGCCGCATTCCACCGTG
CCCCGCGATTGGCCACAGGACCCGCGGTTGAGGCTGGAGCCAACGGCCTG
CTACTCGGTGCTCCGGCGCCGCGAAGCAAGCGATCCCACGCTTTTGCCAT
TTCCGCCGACACCCGCAACCAAATCTGACAAAAACAGAAACAGCAGCACT
AGGCAAAATCGCAGCGACAACAGTAGTAGCCATGAACGGTGCGTTACCTT
CGCCAAAGACGCGAACGTGCGGGAAGATAAGAGGAGCACCAGCAGCACCA
ACATCGCGGAAAGCGCCAAGGGAGAGGCGGAGAAAGTCGTCGCCTTGATG
GGGATGGTGGCGATGCATGAGGGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig14359:356..1280-

>mRNA_H-paniculata_contig14359.2622.1 ID=mRNA_H-paniculata_contig14359.2622.1|Name=mRNA_H-paniculata_contig14359.2622.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=768bp|location=Sequence derived from alignment at H-paniculata_contig14359:356..1280- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCAGTGGCAGTGGGGTGTTCAACTGCTATCACCGTTACCGAGGGGATACC
GGGCTGCTCTATGGGATGGCCTACTCTGCCAGTGGCAGTGGGGTGTTCAA
CTGCTATCACCGTTACCGAGGGGATACCGGGCTGCTCTATGGGATGGCCT
ACTCTGGACCCGCGGTTGAGGCTGGAGCCAACGGCCTGCTACTCGGTGCT
CCGGCGCCGCGAAGCAAGCGATCCCACGCTTTTGCCATTTCCGCCGACAC
CCGCAACCAAATCTGACAAAAACAGAAACAGCAGCACTAGGCAAAATCGC
AGCGACAACAGTAGTAGCCATGAACGGTGCGTTACCTTCGCCAAAGACGC
GAACGTGCGGGAAGATAAGAGGAGCACCAGCAGCACCAACATCGCGGAAA
GCGCCAAGGGAGAGGCGGAGAAAGTCGTCGCCTTGATGGGGATGGTGGCG
ATGCATGAGGGAGACCCGCGGTTGAGGCTGGAGCCAACGGCCTGCTACTC
GGTGCTCCGGCGCCGCGAAGCAAGCGATCCCACGCTTTTGCCATTTCCGC
CGACACCCGCAACCAAATCTGACAAAAACAGAAACAGCAGCACTAGGCAA
AATCGCAGCGACAACAGTAGTAGCCATGAACGGTGCGTTACCTTCGCCAA
AGACGCGAACGTGCGGGAAGATAAGAGGAGCACCAGCAGCACCAACATCG
CGGAAAGCGCCAAGGGAGAGGCGGAGAAAGTCGTCGCCTTGATGGGGATG
GTGGCGATGCATGAGGGA
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