mRNA_H-paniculata_contig1435.2621.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1435.2621.1
Unique NamemRNA_H-paniculata_contig1435.2621.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig1435.2621.1 vs. uniprot
Match: D8LEQ9_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEQ9_ECTSI)

HSP 1 Score: 160 bits (406), Expect = 1.140e-43
Identity = 90/174 (51.72%), Postives = 117/174 (67.24%), Query Frame = 1 
Query:   88 MSFSKTTILATVGWM-LTTARTTQALRVTTPSEGMSVVSSSTYPVEWTGASPDARFDIDLTYCGSYSFCFDN-NCGVFLESLCTEG-ARGCALDSNGGHDVIMPEPLGGLSGSGYKVRIAEVGRDFHNVRCSGDFYLVASRDVPMVGGGGAPSIAVVSPTAESVAIAGEEYTVE 600
            MS S  +++A  G +  TT  +T+AL+V TP+   +VVS   Y V W GAS D RF+IDL YCGSYS+CF+   CG +L ++C EG   GC   ++    V  PEPLGG S  GY++RIAEVG D +  RCS DFYL++S D P VG  G P+I VV+PTA+++AIAGE YTVE
Sbjct:    1 MSSSVASLVALAGILGHTTITSTEALQVLTPAVAETVVSGRPYIVSWNGASADDRFEIDLHYCGSYSYCFEEAECGFWLANVCAEGDGSGCMSQADQSSQVTFPEPLGGRSNEGYRIRIAEVGSDTY--RCSDDFYLMSSADAPAVGEDGGPTIEVVAPTADALAIAGEIYTVE 172
[Close]
BLAST of mRNA_H-paniculata_contig1435.2621.1 vs. uniprot
Match: A0A6H5KPZ5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPZ5_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 3.190e-39
Identity = 80/166 (48.19%), Postives = 104/166 (62.65%), Query Frame = 1 
Query:  109 ILATVGWMLTTARTTQALRVTTPSEGMSVVSSSTYPVEWTGASPDARFDIDLTYCGSYSFCFDN--NCGVFLESLCTEGARGCALDSNGGHDVIMPEPLGGLSGSGYKVRIAEVGRDFHNVRCSGDFYLVASRDVPMVGGGGAPSIAVVSPTAESVAIAGEEYTVE 600
            + A  G +  T  +T+ALRV TP+   SV S   Y V W GA  D RF++DL YCGSYSFCF    +CG ++ ++C E    C +  +    V  PEP+ G S +GY+VRI+EVG D  N RCS DFYLVAS DV   G  G P++ VV+P A ++A+AGE YTVE
Sbjct:    8 LTALAGVLGNTITSTEALRVLTPAVAESVASGRPYVVSWQGAQADDRFEVDLHYCGSYSFCFGEAEDCGFWIANVCNEADDACMIQDDQSSQVTFPEPVAGHSNNGYRVRISEVGTD--NFRCSEDFYLVASADVLEFGEPGGPTMEVVAPEANALAVAGETYTVE 171
[Close]
BLAST of mRNA_H-paniculata_contig1435.2621.1 vs. uniprot
Match: D7FH21_ECTSI (Imm downregulated 8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH21_ECTSI)

HSP 1 Score: 142 bits (359), Expect = 3.150e-37
Identity = 71/148 (47.97%), Postives = 101/148 (68.24%), Query Frame = 1 
Query:  157 ALRVTTPSEGMSVVSSSTYPVEWTGASPDARFDIDLTYCGSYSFCFDNNCGVFLESLCTEGARGCALDSNGGHDVIMPEPLGGLSGSGYKVRIAEVGRDFHNVRCSGDFYLVASRDVPMVGGGGAPSIAVVSPTAESVAIAGEEYTVE 600
            AL+V+TPS+G++V++  TY VEWTG S D RF+IDL YCGS   C +++CG ++ +LC  G  GC  D+ G +D++MPEP+ G SGSGYKVR+ ++  D  +  CS +FYL+AS + P VG    P++ V SP +  +A    EYTVE
Sbjct:   20 ALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGS--MCMEDDCGDWVTALCPYGEDGCP-DNEGDYDIVMPEPMSGTSGSGYKVRVWDI-HDEEDADCSDEFYLIASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVE 163
[Close]
BLAST of mRNA_H-paniculata_contig1435.2621.1 vs. uniprot
Match: A0A6H5JRG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRG9_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 4.500e-36
Identity = 71/148 (47.97%), Postives = 101/148 (68.24%), Query Frame = 1 
Query:  157 ALRVTTPSEGMSVVSSSTYPVEWTGASPDARFDIDLTYCGSYSFCFDNNCGVFLESLCTEGARGCALDSNGGHDVIMPEPLGGLSGSGYKVRIAEVGRDFHNVRCSGDFYLVASRDVPMVGGGGAPSIAVVSPTAESVAIAGEEYTVE 600
            AL+V+TPS+G++V++  TY VEWTG S D RF+IDL YCGS   C +++CG ++ +LC  G  GC  D+ G +D++MPEP+ G SGSGYKVR+ ++  D  +  CS +FYL+AS + P VG    P++ V SP +  +A    EYTVE
Sbjct:   19 ALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGS--MCMEDDCGDWVTALCPYGEDGCP-DNEGDYDIVMPEPMLGTSGSGYKVRVWDI-HDEEDADCSDEFYLLASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVE 162
[Close]
BLAST of mRNA_H-paniculata_contig1435.2621.1 vs. uniprot
Match: D8LI46_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI46_ECTSI)

HSP 1 Score: 140 bits (353), Expect = 5.510e-36
Identity = 73/148 (49.32%), Postives = 97/148 (65.54%), Query Frame = 1 
Query:  157 ALRVTTPSEGMSVVSSSTYPVEWTGASPDARFDIDLTYCGSYSFCFDNNCGVFLESLCTEGARGCALDSNGGHDVIMPEPLGGLSGSGYKVRIAEVGRDFHNVRCSGDFYLVASRDVPMVGGGGAPSIAVVSPTAESVAIAGEEYTVE 600
            AL V TP+EG  VV+S  Y VEWTG   + R++IDL YCGS   C ++ CG ++ +LC  G  GC  D+ G +D++MPEP+ G SGSGYKVR+A+V  D  +  CS +FYL+A  + P  G  G P + V SP++   A AGEEYTVE
Sbjct:    7 ALEVVTPAEGDIVVASRAYTVEWTGTGSNNRYEIDLYYCGS--MCMEDECGDWVTALCPYGEDGCP-DNEGDYDIVMPEPMSGTSGSGYKVRVADVDDD-DSGDCSDEFYLMAHAEAPSAGDAGGPYVTVTSPSSGDSAEAGEEYTVE 150
[Close]
BLAST of mRNA_H-paniculata_contig1435.2621.1 vs. uniprot
Match: A0A6H5JFT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFT9_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 1.050e-34
Identity = 72/148 (48.65%), Postives = 93/148 (62.84%), Query Frame = 1 
Query:  157 ALRVTTPSEGMSVVSSSTYPVEWTGASPDARFDIDLTYCGSYSFCFDNNCGVFLESLCTEGARGCALDSNGGHDVIMPEPLGGLSGSGYKVRIAEVGRDFHNVRCSGDFYLVASRDVPMVGGGGAPSIAVVSPTAESVAIAGEEYTVE 600
            AL V TP+ G  VVSS  Y VEW+G   + RF+IDL YC S   C ++ CG ++ +LC  G  GC  D+ G +D++MPEP+ G SGSGYKVR+A+V  D  +  CS +FYL+A  D P     G P + V SP+    A AGEEYTVE
Sbjct:   20 ALEVVTPAAGDMVVSSRAYTVEWSGTGSNKRFEIDLYYCNS--MCMEDECGEWVTALCPYGEDGCP-DNEGDYDIVMPEPMSGTSGSGYKVRVADVD-DEDSSDCSDEFYLMAHADAPSASDAGGPYVTVTSPSTGDSAEAGEEYTVE 163
[Close]
BLAST of mRNA_H-paniculata_contig1435.2621.1 vs. uniprot
Match: D7FN59_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN59_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 8.010e-34
Identity = 76/166 (45.78%), Postives = 103/166 (62.05%), Query Frame = 1 
Query:  109 ILATVGWMLTTARTTQALRVTTPSEGMSVVSSSTYPVEWTGASPDARFDIDLTYCGSYSFCFD--NNCGVFLESLCTEGARGCALDSNGGHDVIMPEPLGGLSGSGYKVRIAEVGRDFHNVRCSGDFYLVASRDVPMVGGGGAPSIAVVSPTAESVAIAGEEYTVE 600
            I A  G +      T+ALRV TP+   +VVS   Y V W GASPD RF+IDL YCGSYSFCF+  + CG ++ +LC EG   C    +    V +PEP+ G S SGY+VRI +VG +    RCS +FYL++S D     G   P++ VV+P++ ++A+AG  YTVE
Sbjct:    8 IAALTGMLGNIITDTEALRVLTPAVAETVVSDMPYIVSWKGASPDDRFEIDLHYCGSYSFCFEEADECGFWVTNLCAEGDDACMNQDDLMSQVTLPEPVDGHSNSGYRVRIGKVGTE--TFRCSDEFYLMSSADASDQDG---PTMEVVAPSSGALAVAGAVYTVE 168
[Close]
BLAST of mRNA_H-paniculata_contig1435.2621.1 vs. uniprot
Match: D7G3E8_ECTSI (Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E8_ECTSI)

HSP 1 Score: 118 bits (296), Expect = 6.480e-28
Identity = 54/95 (56.84%), Postives = 71/95 (74.74%), Query Frame = 3 
Query:  594 SGGEPMAVDIMFDYNNGFGNTVGRFRIDLYTNYGSGDCGGWVGSICDKPDIGCKDSAGNYNVVMPEVARAGKYKIRVGLFGDDSVYACSPAFEVL 878
            +GGE     + FDY+NG G++V RF IDLY++ GSGDCG +V +ICDKP IGCKDS G+Y+VV+P    +G Y IRVG+F DD VY CS +FE++
Sbjct:  152 AGGE---YTVEFDYDNGLGSSVNRFAIDLYSSGGSGDCGTYVTTICDKPSIGCKDSQGDYDVVIPSGTESGMYSIRVGVFEDDDVYGCSDSFEIV 243
[Close]
BLAST of mRNA_H-paniculata_contig1435.2621.1 vs. uniprot
Match: A0A6H5KP11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP11_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 3.700e-25
Identity = 49/84 (58.33%), Postives = 64/84 (76.19%), Query Frame = 3 
Query:  627 FDYNNGFGNTVGRFRIDLYTNYGSGDCGGWVGSICDKPDIGCKDSAGNYNVVMPEVARAGKYKIRVGLFGDDSVYACSPAFEVL 878
            FD++NGFG++V RF IDLY + GSGDCG +V SICDK  IGCKDS G+Y+VV+P    +G Y IRVG+F D  V+ CS +FE++
Sbjct:  160 FDHDNGFGSSVNRFSIDLYMSGGSGDCGTYVTSICDKSSIGCKDSQGDYDVVIPSDTESGMYSIRVGVFEDPDVFGCSDSFEII 243
[Close]
BLAST of mRNA_H-paniculata_contig1435.2621.1 vs. uniprot
Match: D8LI53_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI53_ECTSI)

HSP 1 Score: 109 bits (272), Expect = 5.420e-24
Identity = 51/102 (50.00%), Postives = 68/102 (66.67%), Query Frame = 3 
Query:  588 VHSGGEPMAVDIMFDYNNGFGNTVGRFRIDLYTNYGSGDCGGWVGSICDKPDIGCKDSAGNYNVVMPEVARAGKYKIRVGLFGDDSVYACSPAFEVLPVGDG 893
              +GGE     + FDY+NG G+ V RF+IDLY+  G+GDCG WV ++CDK  IGCKDS G+Y+V +P+    G Y IRVG F DD++Y CS  FE++    G
Sbjct:   62 AQAGGE---YTVEFDYDNGVGSRVDRFKIDLYSIGGTGDCGTWVMNLCDKEAIGCKDSMGDYDVEIPDTVVDGMYSIRVGRFEDDALYGCSGEFEIVGSSSG 160
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1435.2621.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D8LEQ9_ECTSI1.140e-4351.72EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE... [more]
A0A6H5KPZ5_9PHAE3.190e-3948.19Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FH21_ECTSI3.150e-3747.97Imm downregulated 8 n=1 Tax=Ectocarpus siliculosus... [more]
A0A6H5JRG9_9PHAE4.500e-3647.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LI46_ECTSI5.510e-3649.32EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5JFT9_9PHAE1.050e-3448.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FN59_ECTSI8.010e-3445.78EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7G3E8_ECTSI6.480e-2856.84Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus T... [more]
A0A6H5KP11_9PHAE3.700e-2558.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LI53_ECTSI5.420e-2450.00EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1435contigH-paniculata_contig1435:4033..6405 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons5
Model size990
Cds size537
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929141.7898607-UTR-H-paniculata_contig1435:4032..42601622929141.7898607-UTR-H-paniculata_contig1435:4032..4260Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1435 4033..4260 -
1691480747.6300063-UTR-H-paniculata_contig1435:4032..42601691480747.6300063-UTR-H-paniculata_contig1435:4032..4260Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1435 4033..4260 -
1622929141.8078823-UTR-H-paniculata_contig1435:4448..45841622929141.8078823-UTR-H-paniculata_contig1435:4448..4584Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1435 4449..4584 -
1691480747.6391194-UTR-H-paniculata_contig1435:4448..45841691480747.6391194-UTR-H-paniculata_contig1435:4448..4584Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1435 4449..4584 -
1622929141.8190491-UTR-H-paniculata_contig1435:4913..49151622929141.8190491-UTR-H-paniculata_contig1435:4913..4915Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1435 4914..4915 -
1691480747.649238-UTR-H-paniculata_contig1435:4913..49151691480747.649238-UTR-H-paniculata_contig1435:4913..4915Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1435 4914..4915 -
1622929141.887333-UTR-H-paniculata_contig1435:6318..64051622929141.887333-UTR-H-paniculata_contig1435:6318..6405Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1435 6319..6405 -
1691480747.6870983-UTR-H-paniculata_contig1435:6318..64051691480747.6870983-UTR-H-paniculata_contig1435:6318..6405Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1435 6319..6405 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929141.8403058-CDS-H-paniculata_contig1435:4915..52421622929141.8403058-CDS-H-paniculata_contig1435:4915..5242Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1435 4916..5242 -
1691480747.6590211-CDS-H-paniculata_contig1435:4915..52421691480747.6590211-CDS-H-paniculata_contig1435:4915..5242Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1435 4916..5242 -
1622929141.8586142-CDS-H-paniculata_contig1435:5549..56401622929141.8586142-CDS-H-paniculata_contig1435:5549..5640Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1435 5550..5640 -
1691480747.6684601-CDS-H-paniculata_contig1435:5549..56401691480747.6684601-CDS-H-paniculata_contig1435:5549..5640Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1435 5550..5640 -
1622929141.8732219-CDS-H-paniculata_contig1435:6199..63181622929141.8732219-CDS-H-paniculata_contig1435:6199..6318Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1435 6200..6318 -
1691480747.678067-CDS-H-paniculata_contig1435:6199..63181691480747.678067-CDS-H-paniculata_contig1435:6199..6318Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1435 6200..6318 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1435.2621.1prot_H-paniculata_contig1435.2621.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1435 4916..6318 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1435.2621.1

>prot_H-paniculata_contig1435.2621.1 ID=prot_H-paniculata_contig1435.2621.1|Name=mRNA_H-paniculata_contig1435.2621.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=179bp
MSFSKTTILATVGWMLTTARTTQALRVTTPSEGMSVVSSSTYPVEWTGAS
PDARFDIDLTYCGSYSFCFDNNCGVFLESLCTEGARGCALDSNGGHDVIM
PEPLGGLSGSGYKVRIAEVGRDFHNVRCSGDFYLVASRDVPMVGGGGAPS
IAVVSPTAESVAIAGEEYTVEVSRWRLI*
back to top

mRNA from alignment at H-paniculata_contig1435:4033..6405-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1435.2621.1 ID=mRNA_H-paniculata_contig1435.2621.1|Name=mRNA_H-paniculata_contig1435.2621.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2373bp|location=Sequence derived from alignment at H-paniculata_contig1435:4033..6405- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGAGGGTTGAACAGCGCCTCAAGAGTCAGAACGCTATATCATCTACCAA
AACAAGAGCGTTCATCCGTATCGCAAGTTAAAGCATCATGAGCTTCTCCA
AAACAACGATCCTCGCTACCGTAGGGTGGATGCTGACAACAGCTAGAACT
ACCCAGGCGCTGCGTGTCACTACGCCATCGGAGGGCATGAGTGTGGTCTC
TAGCAGGTCAGAGCAAAGCCCGTTCTTTCAGGCGTTGACTGTGTACTGTT
TGCTTACACTCCTACCCGCAGTAGTTGAGGTCGCAGTTGTGTTTTGGGAT
TGGTTAGCTCTAGATTGGTAATATATTTGGTACATGTGTACTGTATCCTA
CCCCGAGTAAGCAGTGTAAAGGGTTGCGCGGAGTTCGCAAAATTTGTACC
CTCGTTTGCGGTGTTCGGTATCTGGTAGAGCGGTCCATCTGTATTCCTAT
CTCCTCATGTACCGAGCGGGAATTCCCCCACCAAGTGGTCCAGCATAGAT
GGGGTCTGTTCAAGGTGTGTTTACCACTTCTAATAGTGCAGCAATATTGT
AGACAAGAATGGTAACTCGCCAGAGTTCCTTGTCTTTGCAGCTTGATATC
TTTCGCTCTGTATTTCTGACCCATCTACAGTATCTCTCCCCCCTCAGGAT
TGTGAGCATAAGATCAACGCCTGGTTGCCGTATGGCAGTCACCATGTCCT
TCCAATGATCCCTTCTGACGTTTTCTGTCCCTTCCCAAACTTGGCTTTAC
CTTCCATTGTTGTAGCACCTACCCTGTGGAGTGGACGGGTGCCTCGCCGG
ACGCACGATTCGACATTGACCTCACCTACTGTGGCTCCTACTCATTTTGT
TTCGACGTGAGTGTTCTTTATAAACCTATACAGTACTATGTAGTATCAGA
ACATGGTCGTAGGCAGGACAATGGTGCGAGGTGTTGTCCTTCTGCAGAGA
AGTGAGATTTGAACGGATATTTCAATAACTCCACCAAAATAATGCCCGAC
AGGAATATTGACCAGGCCAATCGGGTAATAACACAATCGCAAGAAGGTTC
CATCGCATATCCTTGTGCTATCTTGTGATCACATGTTGCCCTGGGCCCTC
CGTGAGGATGTGTGTTCACTTGCCACCTCCTCCGCACGAATTATGCCTCG
CGCTCATCCACAGAATAACTGCGGTGTCTTCCTCGAGAGCTTGTGCACAG
AGGGAGCTAGGGGTTGTGCTCTGGATTCAAACGGGGGTCATGATGTGATA
ATGCCAGAGCCACTAGGAGGGTTATCAGGTAGCGGCTACAAGGTACGAAT
CGCAGAGGTTGGACGGGACTTCCACAATGTTCGGTGCTCGGGCGACTTTT
ACTTGGTGGCGTCCAGAGACGTGCCCATGGTCGGGGGAGGTGGAGCTCCG
TCGATCGCTGTGGTATCCCCGACGGCCGAGTCCGTTGCTATTGCTGGGGA
GGAGTACACAGTGGAGGTGAGCCGATGGCGGTTGATATAATGGTCATCAG
CTTGCAAGGTTTGGAAACTTTAGTTTAAACCTGACGAACATCAGAGTATC
GTATCTGTCTTGCGTTTCATATTAGTCCTATCACTGCGTATTTTTGTTGT
CTTGAGGTCATACTAAGGGCAGGTCCGTATTTTTGATAGCTTTCGCTATG
GCACCAGCGCGGAACGCTCCATGCAACATTTTATTTCACACATAATGAAA
GTGTAGTGGAATGTTTTGTGCTGGATTTTTCGCCAGGGAATCCACGAAAC
TGACACGTGGCCACGCGAAGTCTAAACGTAAATTGTATTCCATCTCATGA
TCTTTTCGTGACTCTGTCCAGTTTGACTACAATAACGGGTTTGGGAACAC
GGTGGGACGGTTCAGGATCGATCTGTACACCAACTACGGCAGCGGCGACT
GCGGCGGCTGGGTTGGTTCCATCTGTGACAAGCCCGACATCGGTTGCAAA
GACTCGGGTGAGTTGTCATCTGTTTTGTTGTATTTGCACGAAATACTAGA
ATTGTCGCCATGAAATTTGGTTTTGACATACTATACTAAGGCGTTTCATC
ATTTCTTGATGGCTCATTGTCACTGACGGTCATCCCCTTCGTCATTTTTC
CCCCGGTCCGGTGTATATCTTCCATGAATTATGCTACTTGTGCAGCTGGA
AACTACAACGTTGTGATGCCAGAGGTAGCCAGAGCCGGTAAGTACAAGAT
CCGCGTGGGTCTGTTCGGGGACGACTCTGTGTACGCATGCTCTCCGGCTT
TTGAAGTCCTGCCTGTGGGGGACGGACTCTGGACTAGATAAATGAACGAA
GGATAGTATTTGTGTCTTTTTTTTCCCCCATTGATTTTATGTTAGGTCGG
TGGATGACCTCTAGATAATAGTG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig1435:4033..6405-

>mRNA_H-paniculata_contig1435.2621.1 ID=mRNA_H-paniculata_contig1435.2621.1|Name=mRNA_H-paniculata_contig1435.2621.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1074bp|location=Sequence derived from alignment at H-paniculata_contig1435:4033..6405- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGCTTCTCCAAAACAACGATCCTCGCTACCGTAGGGTGGATGCTGAC
AACAGCTAGAACTACCCAGGCGCTGCGTGTCACTACGCCATCGGAGGGCA
TGAGTGTGGTCTCTAGCAGATGAGCTTCTCCAAAACAACGATCCTCGCTA
CCGTAGGGTGGATGCTGACAACAGCTAGAACTACCCAGGCGCTGCGTGTC
ACTACGCCATCGGAGGGCATGAGTGTGGTCTCTAGCAGCACCTACCCTGT
GGAGTGGACGGGTGCCTCGCCGGACGCACGATTCGACATTGACCTCACCT
ACTGTGGCTCCTACTCATTTTGTTTCGACCACCTACCCTGTGGAGTGGAC
GGGTGCCTCGCCGGACGCACGATTCGACATTGACCTCACCTACTGTGGCT
CCTACTCATTTTGTTTCGACAATAACTGCGGTGTCTTCCTCGAGAGCTTG
TGCACAGAGGGAGCTAGGGGTTGTGCTCTGGATTCAAACGGGGGTCATGA
TGTGATAATGCCAGAGCCACTAGGAGGGTTATCAGGTAGCGGCTACAAGG
TACGAATCGCAGAGGTTGGACGGGACTTCCACAATGTTCGGTGCTCGGGC
GACTTTTACTTGGTGGCGTCCAGAGACGTGCCCATGGTCGGGGGAGGTGG
AGCTCCGTCGATCGCTGTGGTATCCCCGACGGCCGAGTCCGTTGCTATTG
CTGGGGAGGAGTACACAGTGGAGGTGAGCCGATGGCGGTTGATATAAAAT
AACTGCGGTGTCTTCCTCGAGAGCTTGTGCACAGAGGGAGCTAGGGGTTG
TGCTCTGGATTCAAACGGGGGTCATGATGTGATAATGCCAGAGCCACTAG
GAGGGTTATCAGGTAGCGGCTACAAGGTACGAATCGCAGAGGTTGGACGG
GACTTCCACAATGTTCGGTGCTCGGGCGACTTTTACTTGGTGGCGTCCAG
AGACGTGCCCATGGTCGGGGGAGGTGGAGCTCCGTCGATCGCTGTGGTAT
CCCCGACGGCCGAGTCCGTTGCTATTGCTGGGGAGGAGTACACAGTGGAG
GTGAGCCGATGGCGGTTGATATAA
back to top