mRNA_H-paniculata_contig14330.2616.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14330.2616.1
Unique NamemRNA_H-paniculata_contig14330.2616.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14330.2616.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14330contigH-paniculata_contig14330:928..1383 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size458
Cds size309
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929141.1243317-CDS-H-paniculata_contig14330:927..12361622929141.1243317-CDS-H-paniculata_contig14330:927..1236Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14330 928..1236 +
1691480747.3618383-CDS-H-paniculata_contig14330:927..12361691480747.3618383-CDS-H-paniculata_contig14330:927..1236Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14330 928..1236 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929141.1369758-UTR-H-paniculata_contig14330:1236..13831622929141.1369758-UTR-H-paniculata_contig14330:1236..1383Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14330 1237..1383 +
1691480747.372815-UTR-H-paniculata_contig14330:1236..13831691480747.372815-UTR-H-paniculata_contig14330:1236..1383Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14330 1237..1383 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14330.2616.1prot_H-paniculata_contig14330.2616.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14330 928..1236 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14330.2616.1

>prot_H-paniculata_contig14330.2616.1 ID=prot_H-paniculata_contig14330.2616.1|Name=mRNA_H-paniculata_contig14330.2616.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=103bp
FVCALFDSFKIILNHSDFVNPWRTRPRSGQPLVKSLVPLNVFGSKFNFDL
VIFLPYLQCPGCRSQISVHLHQRLATILVNSFFVILYSSLQFVIFANFFS
SR*
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mRNA from alignment at H-paniculata_contig14330:928..1383+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14330.2616.1 ID=mRNA_H-paniculata_contig14330.2616.1|Name=mRNA_H-paniculata_contig14330.2616.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=456bp|location=Sequence derived from alignment at H-paniculata_contig14330:928..1383+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTGTCTGTGCCCTCTTTGATTCGTTCAAAATAATTCTCAATCACTCTGA
TTTTGTCAATCCTTGGAGAACCCGTCCTCGTAGCGGCCAGCCATTAGTAA
AGAGTCTCGTGCCACTCAATGTCTTTGGATCGAAATTTAATTTTGATTTG
GTCATATTCCTGCCATACTTGCAGTGTCCTGGCTGCAGGTCTCAGATCTC
AGTCCACCTGCACCAACGTCTCGCTACAATACTAGTTAATTCCTTTTTCG
TCATCCTCTATAGTTCGTTACAGTTCGTTATATTCGCGAATTTTTTTTCA
TCCCGATAAGGAAGTGTTCTTTTTTAGTGCGACGTTATCTCAGGTGGACC
GGGGTCCAAGAATTTCTGGCCAGTGTGAGCTAGCTATCTCACTATGAACC
AAACAGGACCAAATCGAAGTTCGTAAACACACTAATAATGACACTTTTGA
CGGGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig14330:928..1383+

>mRNA_H-paniculata_contig14330.2616.1 ID=mRNA_H-paniculata_contig14330.2616.1|Name=mRNA_H-paniculata_contig14330.2616.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=618bp|location=Sequence derived from alignment at H-paniculata_contig14330:928..1383+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTGTCTGTGCCCTCTTTGATTCGTTCAAAATAATTCTCAATCACTCTGA
TTTTGTCAATCCTTGGAGAACCCGTCCTCGTAGCGGCCAGCCATTAGTAA
AGAGTCTCGTGCCACTCAATGTCTTTGGATCGAAATTTAATTTTGATTTG
GTCATATTCCTGCCATACTTGCAGTGTCCTGGCTGCAGGTCTCAGATCTC
AGTCCACCTGCACCAACGTCTCGCTACAATACTAGTTAATTCCTTTTTCG
TCATCCTCTATAGTTCGTTACAGTTCGTTATATTCGCGAATTTTTTTTCA
TCCCGATAATTTGTCTGTGCCCTCTTTGATTCGTTCAAAATAATTCTCAA
TCACTCTGATTTTGTCAATCCTTGGAGAACCCGTCCTCGTAGCGGCCAGC
CATTAGTAAAGAGTCTCGTGCCACTCAATGTCTTTGGATCGAAATTTAAT
TTTGATTTGGTCATATTCCTGCCATACTTGCAGTGTCCTGGCTGCAGGTC
TCAGATCTCAGTCCACCTGCACCAACGTCTCGCTACAATACTAGTTAATT
CCTTTTTCGTCATCCTCTATAGTTCGTTACAGTTCGTTATATTCGCGAAT
TTTTTTTCATCCCGATAA
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