mRNA_H-paniculata_contig1433.2615.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1433.2615.1 vs. uniprot
Match: D7G7K0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7K0_ECTSI) HSP 1 Score: 556 bits (1433), Expect = 8.850e-157 Identity = 470/1419 (33.12%), Postives = 617/1419 (43.48%), Query Frame = 2
Query: 3278 LRLTIPRIAIRACSSAAVAGDAQLVLEPKLCLGGSRGGAESRTKMSTDVGDGRRSSSGGVLSGGGLPSIAIAAEWLEGHLEMEDTGFTTFAPPQKKRGLFGGPPLIGGIEQASSPVVATSEKSAWQEDAHRLRWLSVRK---VSVGIGQTGIERMTGDECRSASNVDEV---------------GVNLDGVWAEWSPPLFFLAGKAGATVITCLKDSGLLPAPPFEVNTRYEPLTHWSPPSRTPRLTRLPAGEKAVGSAAAATAKPSPGPPPGFPALALGLPPIGLRDRAEACFANKILTGN-----VADVTAADSCKTTVCSRQGEELGSAGGDEQDVTVAASGEGNRTAPDADVATADINQNGKRIVQTFTASSWSQTEDEPRADGGSRAVKKMKQILIISGNDVRVEFPYMATACTGDMEYDDMLRWLRRFHPVV--------LRQKNKAKGEVNTGDSGGPPCTP-----APPQTCVADHDVLFSAAAGNNDTCDDVSGSGAGVKRRPPSGKISVGATAVPVKDAVPPLWRPGLIRGPATWSCQFVEAKTFGLTVDLTRENGGGGSSGSSGHGDDRVEFFGKMVPEICCSVSGISVFTATYAAAAAVSSGERDVGGACGRLRASDGRAGIVHPLPAVSPCYVASGAEATAYWRDRHRPAASATQETRNREAQKKVVSRSHTGVAVSASATAEERSVLQKHXXXXXSRQLSSTTKPSQLPSEERLQGIRFLDDLCTLPTMEGISTATTGNVESKARAMAAAGDLKTRHDRDLQPSKTSVGAEGLRGGARGG-SHRVMALVREMRGADGRVSGRSSVAAMMERTRHCAESRRRILHVARFSVVQMSSAAQTIAGICEGGEAGKGGSRPGARVVDILGEGVDGDWTPSTRLQIIKPVREVTLSVWKVMLHLRRALLLTPSSASPSSGKRFCS-----RNPNWDDVDALEYWARAWAVGGPAGPSGDTLHRLHVRDVAIRGKWPPQPLQNRSSEKENGNGNETEM------QNVPGNFFKNCSE-GIGTEVRVGEFLSEAVGDHFKLLQTEVILDGDRFASVECLNLTRTLGD---QPQXXXXXXXXXXXXXTTERASGPS--SISTSKDIPSLDH--RHESPSAHTAGTSSPLIIVGACFHELKARALAAT-----------------------------------------DGA-IPEAGSVS------TSPPAPPLSRGNRREAHGTTHRTAHGGTNLTRERTEASGRSGGETSSAQEAEVVDTNSSGSSLLLSSL--PWVVSLVNRPEGFLVEAEGVVIRAEHDEELGKKLDSLGRQVRGLVAAQAGLPGRWHPRRDGLCGDFHRLFWNPPKPEEVFDSTSRKPRDR--AWGTHVWLRARDVSIEIGDEPLEAWVEAMHPVWSRELSARVFRHSF 7210
+RLT+PR+ IRACS+A A SR T SGG S+ ++AE +EGH E+ED G T PP G PL G E S VAT + + HRLRWL++RK V+ G G E R +S G+ ++GVWAEWSP LFFLAG++GA +++ LK +G LPAP Y+PL +WSP + A + A A GPP GFP ALGLP +G RA ACFAN++ +G VAD+ S + E G GG D G + A GGSR K+ ++ S DVRVEFPY A C GDMEY D++RWLRRF + +GEV G PP+ C H + S A+ D G++ +P++D++ WSCQ+VEA+ F ++V + SG G ++P + C++SG+SV TA YA GG G DGR G V ++ EA K+ ST+ P+ +P A+ +G KTR D GA GG+ G SHRV RG GR S + A + TRHC +R+R L V++F+V+QM SA + AG RP +RVVDIL EGVDG WTP+T L+IIKPVREVTLS+WK MLHLRRA L S + SG S R P WDD ALEYW RAW GGP+GP+GDTLHRLH RDV+++ +WP QP + E + + + PG F + E G+ V V EFLSE+VG+HFK L+T V LDGD AS+ +++RTLGD P T A G + + +T+ + + +HE PS + S IVGACFHELKARA+A DGA + +AG T+ A RR G RTA + T++S +GG++ + + N+ G+ + + PW++ LV RP GFLVE EG V+RA H LG +LDSL Q + L A + +PGRWHP R G C DFHR+FW PP PEE F ++S +P+DR AWG HVWLRAR +++EI DEPLEAW EAMHPVWSR+L+ARVFR +
Sbjct: 688 IRLTVPRVGIRACSTAVALAAAP---------------PSSREVAGT---------SGGA-------SVTVSAESVEGHFEVEDPG--TMVPPPXXXG-----PL--GQEPQDSTAVATPRR-----ETHRLRWLAIRKATFVTGGSRSGGTESDVSGGRRGSSXXXXXXXXXXXXXXXXXXVDGLAVEGVWAEWSPALFFLAGQSGAMIVSSLKAAGFLPAPVSRSGLGYDPLQYWSPXXXXXXXXXVSPPRSAGMPSPDADAAARRGPPRGFPGDALGLPAVGATSRAAACFANRVFSGGDLLPAVADLLWRPS------EERAEHAGRGGG------------------------GDARAAGDTSGEAXXXXXXXXXXXXVGAAGGSRGKVKIPKVFTASVRDVRVEFPYQAGVCPGDMEYGDVVRWLRRFRCCSTTDGFGGEVADAGPRRGEVEVSGGWGEKVRRDDDKLLPPRRC---HSLPASTASSGGDA----------------------GSSHLPLRDSL-------------AWSCQYVEAREFDMSVAV------------SGXXXXXXXXSG-VLPILNCAISGVSVSTAGYAR-----------GGNVG-----DGRGGGVRRTSSLL-------------------------------EAAKR------------------------------------STSSPTPMPGG----------------------------------ALPPSGAAKTRQVDD------GTGATAAEGGSGGKLSHRVPGR----RGGLGRQSSSARFAVALGGTRHCPNTRKRFLRVSKFAVLQMFSADRRPAG------------RPASRVVDILAEGVDGHWTPATHLKIIKPVREVTLSIWKAMLHLRRAWLAHLSLSRGGSGGDASSVLGGDRCPPWDDPAALEYWVRAWVAGGPSGPAGDTLHRLHARDVSLKARWPVQPQSPAAHEHATASPSAXXXXXXXAKRKAPGTIFPDAEEYGVRMSVGVDEFLSESVGEHFKFLRTAVDLDGDCLASISTFSISRTLGDTCISPATAPRGPSGETSRDDTGGAPGGAGPAAATASGLRGEEGATKHEVPSFYLPTEPSERRIVGACFHELKARAMAVAXXXXXXXXXXXXXXXXXXXXXXCTNQTPRPSXXXXXXXXXXDGAGVGDAGGGDSWSREWTAGTAAGARSSTRRSPVGDGGRTAAVNASSA---TQSSAGAGGQSVGSGDPPGGGRNNRGAVVGTTRALEPWLLPLVTRPAGFLVEVEGAVVRAGHGRALGNRLDSLALQTKALAVALSEMPGRWHPLRGGPCDDFHRMFWKPPIPEEAFVASSARPQDRQGAWGVHVWLRARGLALEIADEPLEAWFEAMHPVWSRQLAARVFRRAL 1838
BLAST of mRNA_H-paniculata_contig1433.2615.1 vs. uniprot
Match: A0A6H5KIC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIC1_9PHAE) HSP 1 Score: 451 bits (1159), Expect = 1.580e-124 Identity = 533/1817 (29.33%), Postives = 698/1817 (38.41%), Query Frame = 2
Query: 2327 GVPTAATTEVDVKRSSMCLPIHLGELSCRAEVRTAAACCVSDDGNVSLEVDSSCRLGSCRLTLCQEGLSVLLWVARLVPTVPFHSSPLPPPLPPRNPLLYPFPPLAFPDKLNPIGLHPPNDREPNEDHEHGHGRGGGLRHFSAADHPTDCFVRRGLDSADGESWSTAEPAAPAVCPRVRVESRPPSECESGKKHAGMLQSGGGAAGRAVV-IRVAYAVDLDMCGVDLMVDGD-------AASTSDGGEGGEAYGGRNTESEKCDDATTAAVAPLDGVLNASSKP--IPQVSSSTPSTKPTTNGANMTSDVAEARRRSLGQRKKSSNRLRLTIPRIAIRACSSAAVAGDAQLVLEPKLCLGGSRGGAESRTKMSTDVGDGRRSSSGGVLSGGGLPSIAIAAEWLEGHLEMEDTGFTTFAPPQKKRGLFGGPPLIGGI-----EQASSPVVATSEKSAWQEDAHRLRWLSVRK---VSVGIGQTGIERMTGDECRSASN-----------------VDEVGVNLDGVWAEWSPPLFFLAGKAGAT---------------------------------------VITCLKDSGLLPAPPFEVNTRYEPLTHWSPPSRTPRLTRLPAGEKAVGSAAAATAKPSPGPPPGFPALALGLPPIGLRDRAEACFANKILTGNVADVTAADSCKTTVCSRQGEELGSAGGDEQDVTVAASGEGNRTAPDADVATADINQNGKRIVQTFTASSWSQTEDEPRADGGSRAVKKMKQILIISGNDVRVEFPYMATACTGDMEYDDMLRWLRRFHPVV--------LRQKNKAKGEVNTGDSGG-------PPCTPAPPQTCVADHDVLFSAAAGNNDTCDDVSGSGAGVKRRPPSGKISVGATAVPVKDAVPPLWRPGLIRGPATWSCQFVEAKTFGLTVDLTRENGGGGSSGSSGHGDDRVEFFGKMVPEICCSVSGISVFTATYAAAAAVSSGERDVGGACGRLRASDGRAGIVHPLPAVSPCYVASGAEATAYWRDRHRPAASATQETRNREAQKKVVSRSHTGVAVSASATAEERSVLQKHXXXXXSRQLSSTTKPSQLPSEERLQGIRFLDDLCTLPTMEGISTATTGNVESKARAMAA----AGDLKTRHDRDLQPSKTSVGAEGLRGGARGGSHRVMALVREMRGADGRVSGRSSVAAMMERTRHCAESRRRILHVARFSVVQMSSAAQTIAGICEGGEAGKGGSRPGARVVDILGEGVDGDWTPSTRLQIIKPVREVTLSVWKVMLHLRRALLLTPSSASPSSGKRFCS-----RNPNWDDVDALEYWARAWAVGGPAGPSGDTLHRLHVRDVAIRGKWPPQPLQNRSSEKENGNGNETE-------------------MQNVPGNFFKNCSE-GIGTEVRVGEFLSEAVGDHF-----------------KLLQTEVILDGDRFASVECLNLTRTLGD---QPQXXXXXXXXXXXXXTTERASGPSSISTSKDIPSLDH-----RHESPSAHTAGTSSPLIIVGACFHELKARALAAT----------------------------------DGAIPEAGSVSTSPPAPPLSRGNRREAHGT-THRTAHGGTNLTRERTEASGRS----GGETSSAQEAEVVDTNSSG--SSLLLSSLPWVVSLVNRPEGFLVEAEGVVIRAEHDEELGKKLDSLGRQVRGLVAAQAGLPGRWHPRRDGLCGDFHRLFWNPPKPEEVFDSTSRKPRDRAWGTHVWLRARDVSIEIGDEPLEAWVEAMHPVWSRELSARVFRHSFKQRRR 7225
G+ TAA V VKR CLPIHLG+L+ AE A + E+ +S RL R TL ++GL VLLW A+LVP + PPP P L H DR P + G R G R SAA+ R + G T E A + PR PPS S +RV+Y +D ++ +++ A +DG G +A+ P G + S P V+ P ++G SD EA +G ++ +RL +PR+ IRACS+A L P SS V+ G S+ ++AE LEGH E+E+ G T PP G G P A P A +E + + ++HRLRWL++RK V+ G G E + R +S E G+ ++GVWAEWSP LFFLAG++GA +++ LK +G L AP F Y+PL HWSPP R + A E V AAA GPP GFP AL LP IG RA ACFAN++ + D R G +G G A GGSR K+ + S DVRVEFPY A C GDMEY D++RWLRRF + +GEV G SGG P PP+ C H + SAA+ D G++ +P++D + WSCQ+VEA+ F ++V ++ G ++P + C++SG+SV TA YA GG G DGR G V ++ EA K+ ST+ P+ P LP E A V+ A AA G+L S G G RGG GR S + A + TRHC +R+R L V++F+V+QM S+ + +AG G + +RVVDIL EGVDG WTPS L+IIKPVREVTLS+WK MLHLRRA L PS + SG S R P WDD ALEYW RAWA GGP+GP+GDTLHRLH R+V ++ WP QP + E + + + VPG F + E G+ + V EFLSE+VG+HF + L+T V LD DR AS+ +++RTLGD P T A G + + + P L +HE PS + S IVGACFHELKAR +A DGA AG GT T R+ T + +SG+S GG+ + +++ N+ G S + PW++ LV RP GFLVE EG V+RA H LGK+LDSL Q + L A + +PGR AWG HVWLRAR V+ EI DEPLEAW EAMHPVWSR+L+ARVFR + RRR
Sbjct: 538 GLDTAA---VGVKRK--CLPIHLGKLALSAEAGIQGAARAA-------EIVASGRLAFGRFTLSRDGLLVLLWAAKLVP-----AFTRPPPQP-----------------LTSEETHRIFDRTP-QARSRGRARLGAARSRSAAE----VVGSRSPEDGRGGVGKTTE-AFSSPSPRQISRRAPPSRLPSPPXXXXXXXXXXXXXXXXXXQVRVSYVLDFEVDHAAVVLXXXXXXXXSRAQRPADGESGTKAHAPAXXXXXXXX--------PSGGGIRTSGSPGGSRSVAXXXXXXXPGSDG----SDAGEA---GVGTAA-AATIIRLAVPRVGIRACSTAVA-----LAAAPP--------------------------SSREVVGTWGGASVTVSAESLEGHFEVEEPG--TMVPPXXXXGPSGQEPYDSTAGKTKRRDAVLPEEAAAEVATPRRESHRLRWLAIRKATFVTGGSRSGGGESVLSGGRRDSSGRSGVPVPPLAVAXXXXXAGEDGLAVEGVWAEWSPALFFLAGQSGAMSVHLSCTETHEKLSHGGPYCDPVSPFFGSFFPAYLLVVKIVSSLKAAGFLSAPAFRSGLGYDPLQHWSPP-RPAGMPSPDANEPVVADAAARR-----GPPRGFPGDALRLPAIGATSRAAACFANRVFSCGDMPPAVIDLLWRPSEERAGH----------------AGRGXXXXXXXXXXXXXXXXXXXXXXXXXXX------XXRVGAAGGSRGKVKIPKAFTASVRDVRVEFPYQAGVCPGDMEYGDVVRWLRRFRCCSTTDWFGGGVPDAEPPRGEV--GFSGGWGEKVRRDDDKPLPPRRC---HSLPASAASSGGDA----------------------GSSHLPLRDNL-------------AWSCQYVEAREFDMSVAVS--------------GXXXXXXXSGVLPNLNCAISGVSVSTAGYAR-----------GGGVG-----DGRGGGVRRTSSLL-------------------------------EAAKR------------------------------------STSSPTPTPGG-------------ALPPFEA---AKARQVDDGTGATAAEWGGGGNL-------------SPGDPGRRGGL------------------GRQSSSARFAVALGGTRHCPNTRKRFLRVSKFAVLQMFSSDR---------QAGGGSA---SRVVDILAEGVDGHWTPSIHLKIIKPVREVTLSIWKAMLHLRRAWLAQPSLSRGGSGDNASSVVGGDRCPPWDDPAALEYWVRAWAAGGPSGPAGDTLHRLHARNVLLKALWPVQPQSPTAHEHATASPSAAPGXXXXXXXXXXXXXXXXXXKKKVPGTIFPHAEEYGVRMSIGVDEFLSESVGEHFNGCVEVSAPCLPLLRRSRFLRTAVDLDDDRLASISTFSISRTLGDTCISPTAARPGSTEEASRDDTGGAPGGAGPAAAT-APGLRGEEGATKHEVPSFYPPTEPSERRIVGACFHELKARVMAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGA--SAGDAXXXXXXXXXXXXXXXXXXGTPTRRSPVCEEGRTASVSTSSGQSSAGAGGQFAGSRDPPGGGRNNRGAMSRTTRALEPWLLPLVTRPAGFLVEVEGAVVRAGHRRALGKRLDSLALQTKALAVALSEMPGR------------------------------------AWGVHVWLRARGVAFEIADEPLEAWFEAMHPVWSRQLAARVFRRALLLRRR 2002 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1433.2615.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1433.2615.1 >prot_H-paniculata_contig1433.2615.1 ID=prot_H-paniculata_contig1433.2615.1|Name=mRNA_H-paniculata_contig1433.2615.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=2426bp MGLLVWLGLAGFKWLLLAIVTVLGLGKTAAWLASRVVNAFAPGWLRKRPIback to top mRNA from alignment at H-paniculata_contig1433:1569..25572- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1433.2615.1 ID=mRNA_H-paniculata_contig1433.2615.1|Name=mRNA_H-paniculata_contig1433.2615.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=24004bp|location=Sequence derived from alignment at H-paniculata_contig1433:1569..25572- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1433:1569..25572- >mRNA_H-paniculata_contig1433.2615.1 ID=mRNA_H-paniculata_contig1433.2615.1|Name=mRNA_H-paniculata_contig1433.2615.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=14556bp|location=Sequence derived from alignment at H-paniculata_contig1433:1569..25572- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |