mRNA_H-paniculata_contig14328.2614.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14328.2614.1
Unique NamemRNA_H-paniculata_contig14328.2614.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig14328.2614.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 2.780e-10
Identity = 34/77 (44.16%), Postives = 46/77 (59.74%), Query Frame = -2 
Query:   86 AKAVAIATSRDSLAAGGDAAWRPDDEYNPETLITVVESKNALSAAGNGGLRFSHLKYILNAFVSKEGFGPVVGSSWR 316
            A A AIA S      G    WRP++E++P+ LI V+ S+++ S AGN G RFSHLK I N  + +E F   + S WR
Sbjct:  512 AVADAIAESITEEENGSAPRWRPEEEFDPQVLIEVINSRSSNSGAGNDGQRFSHLKSITNTKIGREDFCGAMSSLWR 588
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14328.2614.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JH58_9PHAE2.780e-1044.16Reverse transcriptase domain-containing protein n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14328contigH-paniculata_contig14328:31..404 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size374
Cds size339
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929140.7552314-UTR-H-paniculata_contig14328:30..651622929140.7552314-UTR-H-paniculata_contig14328:30..65Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14328 31..65 +
1691480747.1431096-UTR-H-paniculata_contig14328:30..651691480747.1431096-UTR-H-paniculata_contig14328:30..65Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14328 31..65 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929140.767867-CDS-H-paniculata_contig14328:65..4041622929140.767867-CDS-H-paniculata_contig14328:65..404Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14328 66..404 +
1691480747.1535351-CDS-H-paniculata_contig14328:65..4041691480747.1535351-CDS-H-paniculata_contig14328:65..404Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14328 66..404 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14328.2614.1prot_H-paniculata_contig14328.2614.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14328 66..404 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14328.2614.1

>prot_H-paniculata_contig14328.2614.1 ID=prot_H-paniculata_contig14328.2614.1|Name=mRNA_H-paniculata_contig14328.2614.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=113bp
MLSTRATLQASSCSMEHRQEDPTTGPKPSLLTKAFRMYFRWEKRRPPLPA
ADRAFFDSTTVISVSGLYSSSGLQAASPPAASESRLVAMATAFAAAAAEI
LFPRSVPLSWHF*
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mRNA from alignment at H-paniculata_contig14328:31..404+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14328.2614.1 ID=mRNA_H-paniculata_contig14328.2614.1|Name=mRNA_H-paniculata_contig14328.2614.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=374bp|location=Sequence derived from alignment at H-paniculata_contig14328:31..404+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCACCCACTAAAAACCTCTGACTAGACTTCCAGTCATGCTCAGTACACGA
GCTACCCTACAGGCGTCGAGTTGTTCCATGGAGCACCGCCAGGAAGACCC
GACAACGGGGCCAAAACCTTCCTTACTCACGAAGGCGTTCAGGATGTACT
TCAGGTGGGAGAAACGTAGGCCACCGTTACCCGCTGCGGACAGGGCGTTC
TTCGACTCCACAACCGTTATCAGTGTTTCAGGGTTATACTCGTCGTCTGG
CCTCCAGGCGGCATCTCCACCCGCAGCGAGCGAATCCCGGCTTGTTGCTA
TGGCCACTGCTTTCGCCGCTGCCGCCGCCGAGATATTGTTCCCGAGGAGT
GTACCTTTATCGTGGCACTTTTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig14328:31..404+

>mRNA_H-paniculata_contig14328.2614.1 ID=mRNA_H-paniculata_contig14328.2614.1|Name=mRNA_H-paniculata_contig14328.2614.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at H-paniculata_contig14328:31..404+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTCAGTACACGAGCTACCCTACAGGCGTCGAGTTGTTCCATGGAGCA
CCGCCAGGAAGACCCGACAACGGGGCCAAAACCTTCCTTACTCACGAAGG
CGTTCAGGATGTACTTCAGGTGGGAGAAACGTAGGCCACCGTTACCCGCT
GCGGACAGGGCGTTCTTCGACTCCACAACCGTTATCAGTGTTTCAGGGTT
ATACTCGTCGTCTGGCCTCCAGGCGGCATCTCCACCCGCAGCGAGCGAAT
CCCGGCTTGTTGCTATGGCCACTGCTTTCGCCGCTGCCGCCGCCGAGATA
TTGTTCCCGAGGAGTGTACCTTTATCGTGGCACTTTTAGATGCTCAGTAC
ACGAGCTACCCTACAGGCGTCGAGTTGTTCCATGGAGCACCGCCAGGAAG
ACCCGACAACGGGGCCAAAACCTTCCTTACTCACGAAGGCGTTCAGGATG
TACTTCAGGTGGGAGAAACGTAGGCCACCGTTACCCGCTGCGGACAGGGC
GTTCTTCGACTCCACAACCGTTATCAGTGTTTCAGGGTTATACTCGTCGT
CTGGCCTCCAGGCGGCATCTCCACCCGCAGCGAGCGAATCCCGGCTTGTT
GCTATGGCCACTGCTTTCGCCGCTGCCGCCGCCGAGATATTGTTCCCGAG
GAGTGTACCTTTATCGTGGCACTTTTAG
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