mRNA_H-paniculata_contig14326.2613.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14326.2613.1
Unique NamemRNA_H-paniculata_contig14326.2613.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14326.2613.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14326contigH-paniculata_contig14326:378..3243 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size341
Cds size264
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14326.2613.1prot_H-paniculata_contig14326.2613.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14326 2150..3243 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929140.6558824-UTR-H-paniculata_contig14326:377..4531622929140.6558824-UTR-H-paniculata_contig14326:377..453Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14326 378..453 +
1691480747.0921237-UTR-H-paniculata_contig14326:377..4531691480747.0921237-UTR-H-paniculata_contig14326:377..453Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14326 378..453 +
1622929140.6735826-UTR-H-paniculata_contig14326:2148..21491622929140.6735826-UTR-H-paniculata_contig14326:2148..2149Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14326 2149..2149 +
1691480747.1005168-UTR-H-paniculata_contig14326:2148..21491691480747.1005168-UTR-H-paniculata_contig14326:2148..2149Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14326 2149..2149 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929140.6850636-CDS-H-paniculata_contig14326:2149..22241622929140.6850636-CDS-H-paniculata_contig14326:2149..2224Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14326 2150..2224 +
1691480747.1120548-CDS-H-paniculata_contig14326:2149..22241691480747.1120548-CDS-H-paniculata_contig14326:2149..2224Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14326 2150..2224 +
1622929140.7023513-CDS-H-paniculata_contig14326:2797..28791622929140.7023513-CDS-H-paniculata_contig14326:2797..2879Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14326 2798..2879 +
1691480747.1255243-CDS-H-paniculata_contig14326:2797..28791691480747.1255243-CDS-H-paniculata_contig14326:2797..2879Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14326 2798..2879 +
1622929140.7179108-CDS-H-paniculata_contig14326:3136..32431622929140.7179108-CDS-H-paniculata_contig14326:3136..3243Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14326 3137..3243 +
1691480747.1335702-CDS-H-paniculata_contig14326:3136..32431691480747.1335702-CDS-H-paniculata_contig14326:3136..3243Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14326 3137..3243 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14326.2613.1

>prot_H-paniculata_contig14326.2613.1 ID=prot_H-paniculata_contig14326.2613.1|Name=mRNA_H-paniculata_contig14326.2613.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=88bp
MRDGHFAMDGIDTADVGNRTNSSVEPRAHHPRVRSYPNWRMMRQLALLPG
VVGSKINGSQNWSMSIVNRQSCWPLAFASFLFCGLVS*
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mRNA from alignment at H-paniculata_contig14326:378..3243+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14326.2613.1 ID=mRNA_H-paniculata_contig14326.2613.1|Name=mRNA_H-paniculata_contig14326.2613.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2866bp|location=Sequence derived from alignment at H-paniculata_contig14326:378..3243+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CATGGTTGCCCCCATAAAACTCTGTTACGCGAACGTGTGGGTTAGGCTGC
AAGGAGAACTGGGAGAACAAATAAACGTGAGTCTTTGAGGATAACTATAA
CCAATAATCTACGTGTGATTAATACATTGGGAGGCATTAAGAACCTCTTC
ATATTTCCCATAGACAAAGAGCGAAGCACTGCTTATATTTGGTGGCAGAA
TACGGTAGTTTGGGACTAGTCAGGGAGGAAGATGCCTCCGCTTCGGCGTG
TTACCCCCGCTCGGAGACTACTACCACACTGATGCTACAGCCTGAACTAT
GGAGCTAAAGCATTTTTCGTGCGCTTGAGATCATGAGCTCTATATTGTAA
GAGATTACACTCAATTTGATTCCAATGAGCTAGATCAACTACTTAATGGA
AAATTGAAAGCACTTGAAAAATGTTGCGTCCATGACATTCTCTCTTCGAC
TTCACAGAACCTGCCCAGTAATTTGTTTACATGGGCTATTATAACCCCCA
GAAGCCCAGGTCGAACACTTGAGCGCTGTGGGATACCAATTGAGCTGCGG
AGTGGTCAGGTCGATCATTGCAAGAGTGCTACGCAGGATTGCATGTGCAA
AGGTTTTATTCGCGTGAAATTTGGCAACATAACCCCACACAATAATTGAT
GGGCAATTAGATCCTTGAAAGTCTTTCGGACTTTCTCGAGCCATTTTGTA
GAAATCCTTTTTTGGCAAGGAGAAAGCGTGACTGGCGCGCCGAAAAATTC
CCTAACAAAATAAGGGTACTCCATCCGAAATCGATTTTCTGGCAATCGAT
TGAGAATCGTATCTTTCGTCTCGGTAAGACTCGGTCTCGGTTGTGGCTGA
TTCGTCGGCCTGCTGTGTCTGCGTACACGTTGGGGCATTTCCGCACAAGA
TGTGTGGTGTGCCGGGGTTGTGCAACGTTGAAAGCCTGTGGAGTTCGGCC
GGAGGCAGCCGAAGGCAGCTTGCCCACAATGTAGCGAGCCTTCCTTTCGT
GGATGTAACCTACCCGCAATACCAAGTTAGGACCCGCTGTAAAGTGTAGC
AACTCACCTCCTTACACATTTCTAACATGGTGTTATTCGTAATATTCGAG
TGGTTGCCGTTTACTATCAACTCTAGAACGACTGATGACCCAGGAAGACA
AAAATCGTTCAGACATCATATGTACCGCACCCACGGTCGCTGTCTTCTAC
AACATCAATGACGTACGTGCGTAGGGAAGCGCCCCGTCCTCAAGGATCGA
GAAAACCCAAAGGGGGAAGGAGGCTTCTGCATGAGGTTACTTGGCAACTC
CGCTCGCTCACTACAGTGGCCGTCCGTCCATGCAGCTGCTCGTCGGGTCT
TTCGCACGCCGTCAATCATCTCGGCCTTTCTCGTATTGCTCATCGATGCC
ACTTTCTCGACCGGTTCTCATGTTTCCTTTGCCCATCGTCGAATAAACGA
AAAAACGGAACCTTCTACAGCACCTAGCCATGGTACTTGAGGTGATTTTC
TTCGCGCGGTGGGGCCAGCGTTCCCTGTGACCACCTGTGGGTATTCGCTC
TTGACCCCACGTCGTCGCATGCACCACTCCCAACTCGACGCACGTATTCG
CTGGTACGCGTTGGTGATTCCCGGCCTACCTTCTTCATTCTCAAAGTCCG
ATTCCTTGTCGTGTTTGACAGCTGACCATGATGTAGTTATATGCCATAAA
TCTCCACGAGTGCGTGACGTTACCGTTGACTGGCAATCGCGCCCCCGGTG
CTCTGTTATCTTTTGCTACAGGATGCGGGATGGTCATTTCGCGATGGATG
GCATCGATACTGCTGATGTGGGAAACCGCACGAATTCATCAGTGGAGGCA
AGGACTGCGTACGCTACCTTCGTTGTTATTTTCTCTATTCTCCAGACAGT
CGCCATCGCGAGTTTACCGTGACCCGAAGTTCTGTTTTTTGCAAAATAGC
CGTACACCAGCGTGGGGACTATAGCGTTCGACAAGGTACATGCTCTTTAT
CAACCTCGAAGCTTGGGCGAAAGAGGAGGATGCCGGAGAAAAGTCGCTGA
TGATATCGCAGGTGTCTTGTCGATTGCTGTCGTGTGTGTTTCCACCGGCA
GGCAATGGAGACGAACTTGTGTCGAACATGTATCTCGTGTTCGTCAAGCG
AACAAGGGGAAGTGCTGGCGAGCTCGCCGTGAACGAGATGTTCCTGGTGC
ACAATTCGTACGACATGCTCAACATGCGGGTAGTAACGTGTGGCTGGAGT
TTACCTGCGTTACACGAATGAAATGTTGATCATTCGTGAGGACCGTCTTT
CTTGACCGGACCCGTCCATTTATGATGCCCACCCACCTCAGTTGGCTGGT
GTTTATGTGCCACGCTTGTATTGTTCTCTGATCTTATTGAGAAACTTACT
TGTGTCCTCTGCCCTTGCAGCCAAGAGCTCATCACCCTCGAGTGAGATCC
TACCCCAATTGGCGCATGATGAGACAATTGGCTTTGTTGCCAGGGGTTGT
TGGTGAGTGCACTTGGGATTGTGTTTAACACTGCTCATCCTTGTAACGCT
AGACAACCGCTTTGTGCAAGTCCTCTAGTATCGATAGGGATATGCTTCAG
CTCATCAGAGGAAGCTACGTGCAACTACTGTGTTTCTGCTCGCGAGTGTA
AACACGTGTCCGCACTGTGCGGCTAACCTGCTGCATTTCTCCTCGTACAT
TTTCCTTTTTCCCCGTTGGCAATGTTTATATTGTTCCATGTGTCGTCGGT
CTCGTGCAGGGTCAAAAATAAATGGCAGCCAAAATTGGAGTATGTCCATC
GTGAACCGCCAATCGTGCTGGCCCCTCGCGTTCGCTAGTTTTCTTTTCTG
CGGCCTGGTGAGTTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig14326:378..3243+

>mRNA_H-paniculata_contig14326.2613.1 ID=mRNA_H-paniculata_contig14326.2613.1|Name=mRNA_H-paniculata_contig14326.2613.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=528bp|location=Sequence derived from alignment at H-paniculata_contig14326:378..3243+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGGGATGGTCATTTCGCGATGGATGGCATCGATACTGCTGATGTGGG
AAACCGCACGAATTCATCAGTGGAGATGCGGGATGGTCATTTCGCGATGG
ATGGCATCGATACTGCTGATGTGGGAAACCGCACGAATTCATCAGTGGAG
CCAAGAGCTCATCACCCTCGAGTGAGATCCTACCCCAATTGGCGCATGAT
GAGACAATTGGCTTTGTTGCCAGGGGTTGTTGCCAAGAGCTCATCACCCT
CGAGTGAGATCCTACCCCAATTGGCGCATGATGAGACAATTGGCTTTGTT
GCCAGGGGTTGTTGGGTCAAAAATAAATGGCAGCCAAAATTGGAGTATGT
CCATCGTGAACCGCCAATCGTGCTGGCCCCTCGCGTTCGCTAGTTTTCTT
TTCTGCGGCCTGGTGAGTTGAGGTCAAAAATAAATGGCAGCCAAAATTGG
AGTATGTCCATCGTGAACCGCCAATCGTGCTGGCCCCTCGCGTTCGCTAG
TTTTCTTTTCTGCGGCCTGGTGAGTTGA
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