mRNA_H-paniculata_contig14320.2612.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14320.2612.1
Unique NamemRNA_H-paniculata_contig14320.2612.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14320.2612.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14320contigH-paniculata_contig14320:4135..6570 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1351
Cds size1350
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14320.2612.1prot_H-paniculata_contig14320.2612.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14320 4135..6570 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929140.5710566-CDS-H-paniculata_contig14320:4134..46851622929140.5710566-CDS-H-paniculata_contig14320:4134..4685Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14320 4135..4685 -
1691480747.04475-CDS-H-paniculata_contig14320:4134..46851691480747.04475-CDS-H-paniculata_contig14320:4134..4685Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14320 4135..4685 -
1622929140.589128-CDS-H-paniculata_contig14320:5072..52801622929140.589128-CDS-H-paniculata_contig14320:5072..5280Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14320 5073..5280 -
1691480747.0618649-CDS-H-paniculata_contig14320:5072..52801691480747.0618649-CDS-H-paniculata_contig14320:5072..5280Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14320 5073..5280 -
1622929140.6026273-CDS-H-paniculata_contig14320:5687..61521622929140.6026273-CDS-H-paniculata_contig14320:5687..6152Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14320 5688..6152 -
1691480747.071251-CDS-H-paniculata_contig14320:5687..61521691480747.071251-CDS-H-paniculata_contig14320:5687..6152Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14320 5688..6152 -
1622929140.6181524-CDS-H-paniculata_contig14320:6444..65701622929140.6181524-CDS-H-paniculata_contig14320:6444..6570Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14320 6445..6570 -
1691480747.0799973-CDS-H-paniculata_contig14320:6444..65701691480747.0799973-CDS-H-paniculata_contig14320:6444..6570Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14320 6445..6570 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14320.2612.1

>prot_H-paniculata_contig14320.2612.1 ID=prot_H-paniculata_contig14320.2612.1|Name=mRNA_H-paniculata_contig14320.2612.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=450bp
GSVTSSGSGKYVGIGGGSEERTRSRRKSVGALQGFGSLITRRVSRGSNAS
SHSDFSDSGGRKASGGVGELSTKAVDRLRKTNTVPGGLSSSSMAIMGGGG
LGGLGSPAAIGGHRKRESWGMTAAEKAAVQTLEIRRPDDLPHSNKAWKVL
GRSPPPPGAVGSGGGSLAIGRGRSKKASSLSSKNLGTRSSSVPLGPQVTH
GSAHQLKLPSEPPSSTSLSLQGFHHPVGSWSAFSAVTATPSVDSTGETPS
SSRDIGGGRGGGGGAAGGPRDNHLRQQQYGTHRYANSTTTHPDIIHNNAT
HDLVFSPPISMAAADRAPAHGSAGGITLATSGWSTDEEDFVMMGAATPPP
PPPPPPPPPPPPLGLGLSRRQDSDLGGSGSGSMGMFAAEIEVRVGRPPLD
RQDSTAAAAAAARAEQTRRVAVAEADYKEAAHRHAMEDPTYRGIRGAPRG
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mRNA from alignment at H-paniculata_contig14320:4135..6570-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14320.2612.1 ID=mRNA_H-paniculata_contig14320.2612.1|Name=mRNA_H-paniculata_contig14320.2612.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2436bp|location=Sequence derived from alignment at H-paniculata_contig14320:4135..6570- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCAGCGTAACAAGCAGCGGGTCAGGGAAATATGTTGGTATCGGAGGCGG
CAGCGAGGAAAGAACGAGGTCTCGAAGAAAATCCGTGGGGGCGCTGCAAG
GGTTCGGCAGCTTAATAACTCGCAGGGTGATGGAAGCAAAAAAGCGAACG
AAAAACTCGATACAATAGTCACGTAGAGGTGGGGGGGGAGTAAGGAATGT
AAGAAATAAGTAGCATGTGAAAAGTATTTTTGATTTTGATTTTGCATCCA
TCGTCAAAATCGGATGTGTTTTTCAAAGGGTCTATTCCTATTGAAAAATA
GTCATTCGTATTGTTTCTTAAACGCCTGTTTTTGTGTACCATAGTTTTCT
ATGTGGACGGAGGCTTTTAATATATATATATATATTTTTTTTGCTCTCCC
TCTCAATCTCACTAACAGGTCTCGCGCGGATCGAACGCTTCCTCCCACAG
CGACTTCTCAGACTCGGGGGGCAGAAAGGCCAGCGGGGGCGTGGGCGAAC
TATCCACAAAAGCCGTAGACCGCCTGAGGAAGACAAACACAGTGCCCGGA
GGCCTGAGCTCATCCAGCATGGCCATCATGGGCGGCGGCGGGCTGGGGGG
GCTAGGCTCTCCCGCCGCCATCGGCGGACATCGAAAGCGAGAAAGTTGGG
GTATGACTGCCGCTGAAAAGGCTGCTGTGCAGACGCTGGAGATCAGGAGG
CCGGATGATTTGCCCCACAGCAATAAAGCGTGGAAGGTCCTTGGACGGTC
GCCGCCCCCGCCAGGAGCGGTGGGGAGCGGCGGTGGGTCATTGGCCATTG
GGCGGGGGAGGTCGAAAAAGGCTTCTTCGTTGTCGTCGAAGAATTTGGGG
ACGCGATCGAGCTCGGTTCCTTTGGGACCGCAGGTAGAGAGACAAAGTTT
TACTTAATTATGTGATATAATAAGCGCCATTCTTAACCCGTTTGAGGTTC
AATGTTTTTCAAAACCCCTTCGTGTCACGTGCACGAGTCGACCATAGTTC
TCTTGAGCCAAAGATTATTATGCTGACGAGTGAACCACTGCTCTTTTCAA
AGGGGAGTAAATCGGCCCTAGATAATCGCACCTGTAGTCATTTTCCAGCA
TATGTACAAGGCCATACTGCATAAAAAAAATATTACCCCGAAAACGGATT
CCAGGAACAGATTTCCGAGGTGTGAGTTGTGAAACTGTCGTCTAAATTTC
TTAAGCTCGTGGATAAGTAATCCAGTCCCTCCCTCCCCCCAGCCATTTAC
ATACCCTGTACTTCCCACACCCCTCCCAACTTGATGACAGGTAACACATG
GGAGCGCCCACCAGCTCAAGCTACCCTCGGAGCCACCCTCCTCGACGTCG
TTGTCGTTGCAAGGTTTTCACCACCCTGTCGGATCATGGTCTGCCTTCAG
CGCGGTGACCGCCACGCCGTCCGTCGACAGCACGGGTGAGACACCATCGT
CATCGAGAGATATCGGCGGAGGCAGAGGCGGAGGCGGAGGCGCAGCAGGT
GCTAGGAGTAGGGGTCGGGGTGGGGAGAGATGGGGAGGTGGCGGAGGCGT
TGTGGGTCATTTAGAAGAAAAAGTAAAACTCACTTGGTATTACTGTAGTT
ACTGAATTTGTTGTTATTCACGACACACCGATGTATGTATGATCGCGCAT
GATGACGAGTTTGAATGTGGCTTGTAATGCAATCGCGGATGTTGTAGGGA
GTTGAACACCGGAAGTTCGCGGAGATTGGCGAGGTAAGGAATCCACTGAG
TGCAGCAGGCGCGCGACCCAGAAAAAAACGACCTAAAAATGTCCATATTT
TGTGTATATATCCCTTTTTTTGTTGTTTCTCCAATTGCAAGAAAGTGATA
TTTAATACGTATCATATTACACCCCGCACGTTCAGGCGGCCCCCGGGATA
ACCATCTTCGTCAACAACAGTACGGCACCCACCGCTACGCCAATAGCACC
ACCACCCATCCAGACATCATCCACAACAATGCCACCCACGATCTTGTTTT
CAGCCCTCCCATCTCCATGGCGGCAGCCGACCGCGCTCCGGCCCACGGAA
GTGCTGGCGGCATCACGCTGGCCACTAGCGGCTGGTCCACCGACGAGGAA
GATTTTGTCATGATGGGTGCCGCGACGCCGCCTCCGCCGCCGCCGCCACC
CCCACCCCCACCGCCGCCGCCGCTGGGGTTAGGGTTAAGTCGGCGGCAGG
ACAGCGACTTAGGCGGCAGCGGTAGTGGCAGTATGGGGATGTTTGCAGCG
GAAATCGAGGTAAGAGTCGGGCGGCCACCTTTGGACCGGCAGGACTCAAC
GGCGGCGGCGGCGGCGGCTGCGCGAGCCGAGCAGACACGGCGCGTGGCGG
TCGCCGAGGCGGACTATAAGGAAGCAGCGCACCGGCATGCAATGGAGGAC
CCGACGTACAGGGGGATCCGCGGGGCGCCTCGTGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig14320:4135..6570-

>mRNA_H-paniculata_contig14320.2612.1 ID=mRNA_H-paniculata_contig14320.2612.1|Name=mRNA_H-paniculata_contig14320.2612.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2700bp|location=Sequence derived from alignment at H-paniculata_contig14320:4135..6570- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCAGCGTAACAAGCAGCGGGTCAGGGAAATATGTTGGTATCGGAGGCGG
CAGCGAGGAAAGAACGAGGTCTCGAAGAAAATCCGTGGGGGCGCTGCAAG
GGTTCGGCAGCTTAATAACTCGCAGGGGCAGCGTAACAAGCAGCGGGTCA
GGGAAATATGTTGGTATCGGAGGCGGCAGCGAGGAAAGAACGAGGTCTCG
AAGAAAATCCGTGGGGGCGCTGCAAGGGTTCGGCAGCTTAATAACTCGCA
GGGTCTCGCGCGGATCGAACGCTTCCTCCCACAGCGACTTCTCAGACTCG
GGGGGCAGAAAGGCCAGCGGGGGCGTGGGCGAACTATCCACAAAAGCCGT
AGACCGCCTGAGGAAGACAAACACAGTGCCCGGAGGCCTGAGCTCATCCA
GCATGGCCATCATGGGCGGCGGCGGGCTGGGGGGGCTAGGCTCTCCCGCC
GCCATCGGCGGACATCGAAAGCGAGAAAGTTGGGGTATGACTGCCGCTGA
AAAGGCTGCTGTGCAGACGCTGGAGATCAGGAGGCCGGATGATTTGCCCC
ACAGCAATAAAGCGTGGAAGGTCCTTGGACGGTCGCCGCCCCCGCCAGGA
GCGGTGGGGAGCGGCGGTGGGTCATTGGCCATTGGGCGGGGGAGGTCGAA
AAAGGCTTCTTCGTTGTCGTCGAAGAATTTGGGGACGCGATCGAGCTCGG
TTCCTTTGGGACCGCAGGTCTCGCGCGGATCGAACGCTTCCTCCCACAGC
GACTTCTCAGACTCGGGGGGCAGAAAGGCCAGCGGGGGCGTGGGCGAACT
ATCCACAAAAGCCGTAGACCGCCTGAGGAAGACAAACACAGTGCCCGGAG
GCCTGAGCTCATCCAGCATGGCCATCATGGGCGGCGGCGGGCTGGGGGGG
CTAGGCTCTCCCGCCGCCATCGGCGGACATCGAAAGCGAGAAAGTTGGGG
TATGACTGCCGCTGAAAAGGCTGCTGTGCAGACGCTGGAGATCAGGAGGC
CGGATGATTTGCCCCACAGCAATAAAGCGTGGAAGGTCCTTGGACGGTCG
CCGCCCCCGCCAGGAGCGGTGGGGAGCGGCGGTGGGTCATTGGCCATTGG
GCGGGGGAGGTCGAAAAAGGCTTCTTCGTTGTCGTCGAAGAATTTGGGGA
CGCGATCGAGCTCGGTTCCTTTGGGACCGCAGGTAACACATGGGAGCGCC
CACCAGCTCAAGCTACCCTCGGAGCCACCCTCCTCGACGTCGTTGTCGTT
GCAAGGTTTTCACCACCCTGTCGGATCATGGTCTGCCTTCAGCGCGGTGA
CCGCCACGCCGTCCGTCGACAGCACGGGTGAGACACCATCGTCATCGAGA
GATATCGGCGGAGGCAGAGGCGGAGGCGGAGGCGCAGCAGGTAACACATG
GGAGCGCCCACCAGCTCAAGCTACCCTCGGAGCCACCCTCCTCGACGTCG
TTGTCGTTGCAAGGTTTTCACCACCCTGTCGGATCATGGTCTGCCTTCAG
CGCGGTGACCGCCACGCCGTCCGTCGACAGCACGGGTGAGACACCATCGT
CATCGAGAGATATCGGCGGAGGCAGAGGCGGAGGCGGAGGCGCAGCAGGC
GGCCCCCGGGATAACCATCTTCGTCAACAACAGTACGGCACCCACCGCTA
CGCCAATAGCACCACCACCCATCCAGACATCATCCACAACAATGCCACCC
ACGATCTTGTTTTCAGCCCTCCCATCTCCATGGCGGCAGCCGACCGCGCT
CCGGCCCACGGAAGTGCTGGCGGCATCACGCTGGCCACTAGCGGCTGGTC
CACCGACGAGGAAGATTTTGTCATGATGGGTGCCGCGACGCCGCCTCCGC
CGCCGCCGCCACCCCCACCCCCACCGCCGCCGCCGCTGGGGTTAGGGTTA
AGTCGGCGGCAGGACAGCGACTTAGGCGGCAGCGGTAGTGGCAGTATGGG
GATGTTTGCAGCGGAAATCGAGGTAAGAGTCGGGCGGCCACCTTTGGACC
GGCAGGACTCAACGGCGGCGGCGGCGGCGGCTGCGCGAGCCGAGCAGACA
CGGCGCGTGGCGGTCGCCGAGGCGGACTATAAGGAAGCAGCGCACCGGCA
TGCAATGGAGGACCCGACGTACAGGGGGATCCGCGGGGCGCCTCGTGGGG
CGGCCCCCGGGATAACCATCTTCGTCAACAACAGTACGGCACCCACCGCT
ACGCCAATAGCACCACCACCCATCCAGACATCATCCACAACAATGCCACC
CACGATCTTGTTTTCAGCCCTCCCATCTCCATGGCGGCAGCCGACCGCGC
TCCGGCCCACGGAAGTGCTGGCGGCATCACGCTGGCCACTAGCGGCTGGT
CCACCGACGAGGAAGATTTTGTCATGATGGGTGCCGCGACGCCGCCTCCG
CCGCCGCCGCCACCCCCACCCCCACCGCCGCCGCCGCTGGGGTTAGGGTT
AAGTCGGCGGCAGGACAGCGACTTAGGCGGCAGCGGTAGTGGCAGTATGG
GGATGTTTGCAGCGGAAATCGAGGTAAGAGTCGGGCGGCCACCTTTGGAC
CGGCAGGACTCAACGGCGGCGGCGGCGGCGGCTGCGCGAGCCGAGCAGAC
ACGGCGCGTGGCGGTCGCCGAGGCGGACTATAAGGAAGCAGCGCACCGGC
ATGCAATGGAGGACCCGACGTACAGGGGGATCCGCGGGGCGCCTCGTGGG
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