mRNA_H-paniculata_contig14315.2607.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14315.2607.1
Unique NamemRNA_H-paniculata_contig14315.2607.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig14315.2607.1 vs. uniprot
Match: A0A6H5KAG6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAG6_9PHAE)

HSP 1 Score: 196 bits (499), Expect = 5.590e-51
Identity = 104/210 (49.52%), Postives = 135/210 (64.29%), Query Frame = 1
Query:   40 VPNTFKQATKSPYTDKWMEAMKKELHSLDEHQVADFIPASSIPPNHTVIGTRWVFKVKADGKFKARLVIQGWSQKHGIDCGSTFAPVCRLESQIMLLALATAKDWTVHALDVQVAFLNGKLKESIDIWVAP----------KPN-----------------WNHTIDNKLRSMGFAPTISDPCV-----NDDDILVTEPMDELLMDVRNQ 573
            VPNT+KQA  SP + +W +AM KEL SLD+H VAD IP SS+P   +VIGTRWV++VK DG+FKAR+V+QGW+Q+HGIDC +TFAPVC++ SQ +LLA+A A+ W V A+DVQ AFLNGKL E +  + AP          KP                  WN TID  LR  GF PT SDPCV      +  I++T  +D++L+ V  +
Sbjct:  643 VPNTYKQAMNSPQSTEWEQAMLKELASLDDHDVADLIPVSSVPAGCSVIGTRWVYRVKTDGRFKARVVVQGWAQQHGIDCFTTFAPVCKIGSQRLLLAIAAAQGWPVIAMDVQTAFLNGKLSEDVYTYQAPGFEKIESSTGKPLVWKLKKSLYGLRQSPSVWNLTIDKDLRGKGFTPTASDPCVYTKGSGNSYIMLTLFVDDILLTVATR 852          
BLAST of mRNA_H-paniculata_contig14315.2607.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE)

HSP 1 Score: 166 bits (421), Expect = 1.090e-40
Identity = 91/270 (33.70%), Postives = 145/270 (53.70%), Query Frame = 1
Query:   28 SSYTVPNTFKQATKSPYTDKWMEAMKKELHSLDEHQVADFIPASSIPPNHTVIGTRWVFKVKADGKFKARLVIQGWSQKHGIDCGSTFAPVCRLESQIMLLALATAKDWTVHALDVQVAFLNGKLKESIDIWVA----------------------------PKPNWNHTIDNKLRSMGFAPTISDPCVND--------------DDILVTEPMDELLMDVRNQLMNKFTITDLGEVSLVLGLEVLRNKQTSTLQLSQHKFV*VQHVIGK 711
            +S  VP T+++A +S   D+W  AM KE+ SL +H VAD +P  S+PP    IG+RW++K+KA G  KARL++QGW Q+HGIDCG T+APV R  SQ++L+A+A  + + V  +DV  AFL   ++E + +  A                            P+ N+ +     ++ +GF   +SDPCV                DD  +      ++ D++ QL +KF +TD G   L+LG+E+  ++    + +SQHK+  V +++ K
Sbjct:  885 ASIPVPTTYQEAMRSMDADQWKAAMDKEMKSLKDHDVADLVPIQSLPPGAKPIGSRWLYKMKATGVMKARLIVQGWGQRHGIDCGGTYAPVSRFSSQLVLMAIAAERGYVVETMDVVTAFLQSNVEEEVYVRQAKGYEITDEVTGLPLVMKLKKSLYGLKQSPR-NFGNAFAKGIKEIGFTALLSDPCVYVYGAGPTYAILCVYVDDCTLAGKTPSVVQDLKKQLSDKFKMTDGGPAELLLGMEI--SQSDGEIIVSQHKY--VMNILDK 1149          
BLAST of mRNA_H-paniculata_contig14315.2607.1 vs. uniprot
Match: A0A6H5K9R3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9R3_9PHAE)

HSP 1 Score: 165 bits (417), Expect = 2.440e-40
Identity = 99/259 (38.22%), Postives = 142/259 (54.83%), Query Frame = 1
Query:   40 VPNTFKQATKSPYTDKWMEAMKKELHSLDEHQVADFIPASSIPPNHTVIGTRWVFKVKADGKFKARLVIQGWSQKHGIDCGSTFAPVCRLESQIMLLALATAKDWTVHALDVQVAFLNGKLKESIDIWVAPKPN-----------------------------WNHTIDNKLRSMGFAPTISDPCV-----ND---------DDILVTEPMDELLMDVRNQLMNKFTITDLGEVSLVLGLEVLRNKQTSTLQLSQHKFV 687
            +PNTFK+A  SP T +   A+ KEL S  +H+V   +P +S+P +  V+GTR+VFK KAD +FK RLV+QG  Q+ GID G  +A VCR+ S  +  A+A  + W V  +DV VAFL   + +  D+WV P P                              W  TID  L  +GF PT SDPCV      D         +DIL++    +L+ D++ +L ++F ITD+GEV L+LG++V R+ +  TL +SQ  +V
Sbjct:  379 IPNTFKEAINSPETKQCKVAIGKELDSRAKHRVFKLVPITSVPKHEKVLGTRFVFKQKADERFKVRLVVQGHVQESGIDDGRRYARVCRIGSVRIFFAIACERGWPVWQMDVAVAFLQPTIDK--DVWVKPAPGQDAKDPATGGIMVYKLERSLYGLAQSPVLWYDTIDEVLVVIGFRPTQSDPCVYIHGSGDTLVILTLYVNDILISGKDPDLVADLKKELQDRFEITDIGEVRLILGMKVTRSYENGTLVVSQKGYV 635          
BLAST of mRNA_H-paniculata_contig14315.2607.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 160 bits (405), Expect = 1.450e-38
Identity = 93/255 (36.47%), Postives = 138/255 (54.12%), Query Frame = 1
Query:   40 VPNTFKQATKSPYTDKWMEAMKKELHSLDEHQVADFIPASSIPPNHTVIGTRWVFKVKADGKFKARLVIQGWSQKHGIDCGSTFAPVCRLESQIMLLALATAKDWTVHALDVQVAFLNGKLKESIDI-------------------------WVAPKP-NWNHTIDNKLRSMGFAPTISDPCV-----NDDDILVTEPMDELLMD---------VRNQLMNKFTITDLGEVSLVLGLEVLRNKQTSTLQLSQHKF 684
            VP T ++A  SP   KW  A ++E+ SL + +V   +P S++PP    I ++WVFK KADG FK R+V QGW+Q  G+DCGST+APVCR++S  M+  +    +     +DV  AFL   ++E + +                          +A  P NW +TID  L  +GF    SDPCV     N   I +T  +D+LL+          V+ +L  +F +TDLGE SLVLG+E+ R+++ +TL +SQ  +
Sbjct: 1150 VPRTIQEARASPDATKWNAAAEREMKSLSDRKVYKLVPRSAVPPERKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAY 1404          
BLAST of mRNA_H-paniculata_contig14315.2607.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 160 bits (405), Expect = 1.480e-38
Identity = 93/255 (36.47%), Postives = 138/255 (54.12%), Query Frame = 1
Query:   40 VPNTFKQATKSPYTDKWMEAMKKELHSLDEHQVADFIPASSIPPNHTVIGTRWVFKVKADGKFKARLVIQGWSQKHGIDCGSTFAPVCRLESQIMLLALATAKDWTVHALDVQVAFLNGKLKESIDI-------------------------WVAPKP-NWNHTIDNKLRSMGFAPTISDPCV-----NDDDILVTEPMDELLMD---------VRNQLMNKFTITDLGEVSLVLGLEVLRNKQTSTLQLSQHKF 684
            VP T ++A  SP   KW  A ++E+ SL + +V   +P S++PP    I ++WVFK KADG FK R+V QGW+Q  G+DCGST+APVCR++S  M+  +    +     +DV  AFL   ++E + +                          +A  P NW +TID  L  +GF    SDPCV     N   I +T  +D+LL+          V+ +L  +F +TDLGE SLVLG+E+ R+++ +TL +SQ  +
Sbjct: 1315 VPRTIQEARASPDATKWNAAAEREMKSLSDRKVYKLVPRSAVPPERKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAY 1569          
BLAST of mRNA_H-paniculata_contig14315.2607.1 vs. uniprot
Match: A0A6H5KE92_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE92_9PHAE)

HSP 1 Score: 157 bits (398), Expect = 7.700e-38
Identity = 90/259 (34.75%), Postives = 135/259 (52.12%), Query Frame = 1
Query:   40 VPNTFKQATKSPYTDKWMEAMKKELHSLDEHQVADFIPASSIPPNHTVIGTRWVFKVKADGKFKARLVIQGWSQKHGIDCGSTFAPVCRLESQIMLLALATAKDWTVHALDVQVAFLNGKLKESIDIWVAPKPN-----------------------------WNHTIDNKLRSMGFAPTISDPCVND--------------DDILVTEPMDELLMDVRNQLMNKFTITDLGEVSLVLGLEVLRNKQTSTLQLSQHKFV 687
            +PNT+ +A  SP  ++W  A  KE+ +L +H V + +P SS+P    ++GT++VFK K DG+FKARLV+ G  Q+ G D G ++APVCR+ S  M  A+    +W ++ LDV  AFLN       D++V P P                              WN T+D  L   G+  T SDPCV                DDIL+T    +L+   + +L ++F +TD+GEV  +LG++V R+ +  TL +SQ  +V
Sbjct:  341 IPNTYDEAMSSPQREEWKGACSKEMDNLRKHNVYNLVPLSSVPKGEKILGTKFVFKKKLDGRFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDR--DVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYV 597          
BLAST of mRNA_H-paniculata_contig14315.2607.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE)

HSP 1 Score: 157 bits (397), Expect = 1.010e-37
Identity = 90/255 (35.29%), Postives = 135/255 (52.94%), Query Frame = 1
Query:   40 VPNTFKQATKSPYTDKWMEAMKKELHSLDEHQVADFIPASSIPPNHTVIGTRWVFKVKADGKFKARLVIQGWSQKHGIDCGSTFAPVCRLESQIMLLALATAKDWTVHALDVQVAFLNGKLKESIDIWVAP--------------------------KPNWNHTIDNKLRSMGFAPTISDPCV-----NDDDILVTEPMDELLMD---------VRNQLMNKFTITDLGEVSLVLGLEVLRNKQTSTLQLSQHKF 684
            VP T ++A   P  ++W  A ++E+ SL E QV   +P +++PP    I ++WVFK KA G FK RLV QGW+Q  G+DCG+T+APVCR +S  ML  +A   +  +  +DV  AFL   + E++ +   P                            NW HTID  L  +GF P  SD CV     +D  + +T  +D+LL+          ++ +L  +F +TD+GEV LVLG+E+ R++   TL +SQ  +
Sbjct:  458 VPRTIEEARAMPDGEQWNAAAEREIASLKERQVYKLVPRTAVPPGRKRIKSKWVFKRKAGGSFKGRLVAQGWNQVPGLDCGNTYAPVCRFQSIRMLACIAVQFNLELDQMDVSTAFLYADILENVFVEQPPGFEVKDKDGGDLVMQLQKSLYGLAQSPSNWFHTIDPFLVEIGFVPLKSDTCVYLYDHDDVQVYLTLYVDDLLLAGNNSRAISMIKKKLTQRFKMTDMGEVKLVLGMEIKRDRNQGTLTISQEAY 712          
BLAST of mRNA_H-paniculata_contig14315.2607.1 vs. uniprot
Match: A0A6H5KCZ9_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCZ9_9PHAE)

HSP 1 Score: 155 bits (392), Expect = 1.450e-37
Identity = 82/252 (32.54%), Postives = 135/252 (53.57%), Query Frame = 1
Query:   40 VPNTFKQATKSPYTDKWMEAMKKELHSLDEHQVADFIPASSIPPNHTVIGTRWVFKVKADGKFKARLVIQGWSQKHGIDCGSTFAPVCRLESQIMLLALATAKDWTVHALDVQVAFLNGKLKESIDIWVA----------------------------PKPNWNHTIDNKLRSMGFAPTISDPCVNDDDILVTEPMDELLMDVRNQLMNKFTITDLGEVSLVLGLEVLRNKQTSTLQLSQHKFV*VQHVIGK 711
            +P T+++A +S   D+W  AM KE+ SL +H VAD +P   +PP    IG+RW++K+KA G  KARL++QGW Q+HGIDCG T+ PV R  SQ++ +A+A  + + V  +DV  AFL  K++E + +  A                            P+ N+ +     ++ +G    +SDPC             +    ++ QL +KF +TD G   L+LG+E+  +++   + +SQHK+  V +++ K
Sbjct:  325 IPTTYQEAMRSMDADQWKAAMDKEIRSLKDHDVADLVPVQRLPPGAKPIGSRWLYKMKATGVMKARLIVQGWGQRHGIDCGGTYGPVSRFSSQLVFMAIAAERGYDVETMDVVTAFLQSKVEEEVYVRQAKGYEITDEVTGLPLVMKLKKSLYGLKQSPR-NFGNAFAKGIKEIGSTALLSDPC-------------DTKCCLKKQLSDKFKMTDGGPAELLLGMEI--SQRDGEITVSQHKY--VMNILDK 558          
BLAST of mRNA_H-paniculata_contig14315.2607.1 vs. uniprot
Match: A0A6H5KTY2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTY2_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 7.240e-37
Identity = 89/259 (34.36%), Postives = 135/259 (52.12%), Query Frame = 1
Query:   40 VPNTFKQATKSPYTDKWMEAMKKELHSLDEHQVADFIPASSIPPNHTVIGTRWVFKVKADGKFKARLVIQGWSQKHGIDCGSTFAPVCRLESQIMLLALATAKDWTVHALDVQVAFLNGKLKESIDIWVAPKPN-----------------------------WNHTIDNKLRSMGFAPTISDPCV------ND--------DDILVTEPMDELLMDVRNQLMNKFTITDLGEVSLVLGLEVLRNKQTSTLQLSQHKFV 687
            +PNT+ +A  SP  ++W  A  KE+ ++ +H V + +P SS+     ++GT++VFK K DG+FKARLV+ G  Q+ G D G ++APVCR+ S  M  A+    +W ++ LDV  AFLN       D++V P P                              WN T+D  L   G+  T SDPCV      N         DDIL+T    +L+   + +L ++F +TD+GEV  +LG++V R+ +  TL +SQ  +V
Sbjct:  185 IPNTYDEAMSSPQREEWKGACSKEMDNMRKHDVYNLVPLSSVLKGEKILGTKFVFKKKLDGRFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDR--DVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNSIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVPRDYEQRTLAISQEHYV 441          
BLAST of mRNA_H-paniculata_contig14315.2607.1 vs. uniprot
Match: A0A6H5KS50_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS50_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 7.400e-37
Identity = 89/256 (34.77%), Postives = 131/256 (51.17%), Query Frame = 1
Query:   40 VPNTFKQATKSPYTDKWMEAMKKELHSLDEHQVADFIPASSIPPNHTVIGTRWVFKVKADGKFKARLVIQGWSQKHGIDCGSTFAPVCRLESQIMLLALATAKDWTVHALDVQVAFLNGKLKESIDIWVAPKPN-----------------------------WNHTIDNKLRSMGFAPTISDPCVND---------------DDILVTEPMDELLMDVRNQLMNKFTITDLGEVSLVLGLEVLRNKQTSTLQLSQ 675
            +PNT+ +A  SP  ++W  A  KE+ +L +H V + +P SS+P    ++GT++VF  K DG+FKARLV+ G  Q  G D G ++APVCR+ S  M  A+    +W ++ LDV  AFLN       D++V P P                              WN T+D  L   G+  T SDPCV                 DDIL+T    +L+   + +L N+F +TD+GEV  +LG++V R+ +  TL +SQ
Sbjct:  284 IPNTYDEAMSSPQREEWKGACSKEMDNLRKHNVYNLVPLSSVPKGEQILGTKFVFTKKLDGRFKARLVVGGHRQAPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDR--DVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVCLTSGNTIVILTVCVDDILITGGDQQLVDQPKKELTNRFEMTDMGEVKRILGIDVQRDYEQGTLAISQ 537          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14315.2607.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KAG6_9PHAE5.590e-5149.52Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KY84_9PHAE1.090e-4033.70Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K9R3_9PHAE2.440e-4038.22Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KJH6_9PHAE1.450e-3836.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J842_9PHAE1.480e-3836.47Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KE92_9PHAE7.700e-3834.75Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KL37_9PHAE1.010e-3735.29Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KCZ9_9PHAE1.450e-3732.54Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KTY2_9PHAE7.240e-3734.36Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KS50_9PHAE7.400e-3734.77Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14315contigH-paniculata_contig14315:59..1572 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score76.3
Seed ortholog evalue1.2e-11
Seed eggNOG ortholog400682.PAC_15712907
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3A5XY@33154,3C0JZ@33208,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Exons3
Model size1423
Cds size384
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14315.2607.1prot_H-paniculata_contig14315.2607.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14315 847..1230 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929139.4288025-UTR-H-paniculata_contig14315:58..4691622929139.4288025-UTR-H-paniculata_contig14315:58..469Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14315 59..469 +
1691480746.6438365-UTR-H-paniculata_contig14315:58..4691691480746.6438365-UTR-H-paniculata_contig14315:58..469Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14315 59..469 +
1622929139.439262-UTR-H-paniculata_contig14315:545..6431622929139.439262-UTR-H-paniculata_contig14315:545..643Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14315 546..643 +
1691480746.6657066-UTR-H-paniculata_contig14315:545..6431691480746.6657066-UTR-H-paniculata_contig14315:545..643Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14315 546..643 +
1622929139.4518576-UTR-H-paniculata_contig14315:658..8461622929139.4518576-UTR-H-paniculata_contig14315:658..846Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14315 659..846 +
1691480746.6766996-UTR-H-paniculata_contig14315:658..8461691480746.6766996-UTR-H-paniculata_contig14315:658..846Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14315 659..846 +
1622929139.6616511-UTR-H-paniculata_contig14315:1230..15721622929139.6616511-UTR-H-paniculata_contig14315:1230..1572Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14315 1231..1572 +
1691480746.702402-UTR-H-paniculata_contig14315:1230..15721691480746.702402-UTR-H-paniculata_contig14315:1230..1572Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14315 1231..1572 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929139.4658933-CDS-H-paniculata_contig14315:846..12301622929139.4658933-CDS-H-paniculata_contig14315:846..1230Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14315 847..1230 +
1691480746.6891427-CDS-H-paniculata_contig14315:846..12301691480746.6891427-CDS-H-paniculata_contig14315:846..1230Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14315 847..1230 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14315.2607.1

>prot_H-paniculata_contig14315.2607.1 ID=prot_H-paniculata_contig14315.2607.1|Name=mRNA_H-paniculata_contig14315.2607.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=128bp
MSSANPTKTPGTKTGQSTASNNDSLLDAAVTTEYQAMVGSLIFLTQFTRF
DICFSVIQAARFMSAPTQQHLAAVKRTLRYLRGYSDISITYSRSKLELVG
YSDASYCTMSTTGTMFFSANELVHFAS*
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mRNA from alignment at H-paniculata_contig14315:59..1572+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14315.2607.1 ID=mRNA_H-paniculata_contig14315.2607.1|Name=mRNA_H-paniculata_contig14315.2607.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1514bp|location=Sequence derived from alignment at H-paniculata_contig14315:59..1572+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTCATCGACAGCGACAGCATTATACCTCCAGCTATACAGTGCCCAACAC GTTCAAACAGGCTACTAAATCCCCATATACGGACAAGTGGATGGAGGCAA TGAAGAAGGAACTGCACAGCTTAGACGAACACCAAGTCGCCGATTTCATC CCAGCTAGCTCCATTCCACCCAACCACACAGTCATCGGCACGCGCTGGGT GTTTAAAGTGAAAGCAGACGGAAAATTCAAGGCTCGACTCGTGATACAAG GCTGGTCTCAAAAACACGGAATAGACTGCGGGAGCACTTTTGCACCAGTA TGCAGACTGGAGAGCCAGATAATGCTACTCGCGCTTGCAACAGCAAAGGA TTGGACAGTCCACGCATTGGATGTTCAAGTTGCTTTTCTGAACGGCAAAC TGAAGGAAAGCGTCTTCTGTAAACAAGCACCTGCTTCTAGAAGACAGACT CCACTACAAGACAAATCTACGTGATGAGCTTAAAGAGATCGATATATGGG TTGCGCCAAAGCCCAATTGGAACCATACCATCGACAATAAGCTGAGGAGT ATGGGCTTTGCACCGACCATCTCGGATCCTTGTGTGTACAGTAAATGAAG CAACGACGACGACATCCTAGTTACAGAACCAATGGACGAACTACTAATGG ATGTTCGCAACCAACTCATGAACAAGTTCACTATCACGGACCTTGGAGAG GTATCGCTTGTTCTTGGCCTGGAGGTACTGCGCAACAAACAAACTAGCAC CCTTCAGCTGTCACAGCACAAGTTCGTATAGGTTCAACATGTCATCGGCA AATCCTACCAAGACGCCAGGTACTAAAACGGGCCAAAGCACTGCTAGTAA TAATGACAGCCTACTGGATGCAGCAGTCACGACGGAATATCAAGCCATGG TAGGGAGCCTCATCTTCCTGACTCAGTTTACAAGATTCGACATCTGCTTC AGCGTCATCCAAGCAGCACGGTTCATGAGTGCACCAACCCAACAGCACTT GGCCGCAGTAAAGCGCACTCTTCGCTATTTGCGGGGCTACTCTGATATTT CAATCACTTACAGCAGAAGCAAACTGGAACTGGTCGGCTACTCTGACGCA TCGTACTGCACAATGTCTACAACGGGCACGATGTTCTTCTCTGCTAACGA ATTGGTACACTTTGCGTCTTGACTTCAGAATATCTCAGCTACAAGCACAA CTAAGGCGGAACTCATCGCACTAGCCGCATGCACTAAACAGGGTATTCAC CTTCTAGGGATCTGCAGAGAACTTGAGCTTCAACTCAACAGCTGTCAAGT TCGCAGTGACAACAGAGGCGCCCTCCATATCCCAGCAAATAGCAATCAAT CCAGCCGCAGCATACATCTAGCCATCAGATTTGCAGCATTTCGCGACTGG GTCAGGAGCAAGCAGCTCATCATCGACCACGTATCAAGTTCAGACCAGCT AGCCGACATCCTCATCAAGCGCTGTGAGAGAGTGACGTTTGCTCGGCTGT GCGCCAACATTTCG
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Coding sequence (CDS) from alignment at H-paniculata_contig14315:59..1572+

>mRNA_H-paniculata_contig14315.2607.1 ID=mRNA_H-paniculata_contig14315.2607.1|Name=mRNA_H-paniculata_contig14315.2607.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=768bp|location=Sequence derived from alignment at H-paniculata_contig14315:59..1572+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCATCGGCAAATCCTACCAAGACGCCAGGTACTAAAACGGGCCAAAG
CACTGCTAGTAATAATGACAGCCTACTGGATGCAGCAGTCACGACGGAAT
ATCAAGCCATGGTAGGGAGCCTCATCTTCCTGACTCAGTTTACAAGATTC
GACATCTGCTTCAGCGTCATCCAAGCAGCACGGTTCATGAGTGCACCAAC
CCAACAGCACTTGGCCGCAGTAAAGCGCACTCTTCGCTATTTGCGGGGCT
ACTCTGATATTTCAATCACTTACAGCAGAAGCAAACTGGAACTGGTCGGC
TACTCTGACGCATCGTACTGCACAATGTCTACAACGGGCACGATGTTCTT
CTCTGCTAACGAATTGGTACACTTTGCGTCTTGAATGTCATCGGCAAATC
CTACCAAGACGCCAGGTACTAAAACGGGCCAAAGCACTGCTAGTAATAAT
GACAGCCTACTGGATGCAGCAGTCACGACGGAATATCAAGCCATGGTAGG
GAGCCTCATCTTCCTGACTCAGTTTACAAGATTCGACATCTGCTTCAGCG
TCATCCAAGCAGCACGGTTCATGAGTGCACCAACCCAACAGCACTTGGCC
GCAGTAAAGCGCACTCTTCGCTATTTGCGGGGCTACTCTGATATTTCAAT
CACTTACAGCAGAAGCAAACTGGAACTGGTCGGCTACTCTGACGCATCGT
ACTGCACAATGTCTACAACGGGCACGATGTTCTTCTCTGCTAACGAATTG
GTACACTTTGCGTCTTGA
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