mRNA_H-paniculata_contig14315.2607.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig14315.2607.1 vs. uniprot
Match: A0A6H5KAG6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAG6_9PHAE) HSP 1 Score: 196 bits (499), Expect = 5.590e-51 Identity = 104/210 (49.52%), Postives = 135/210 (64.29%), Query Frame = 1 Query: 40 VPNTFKQATKSPYTDKWMEAMKKELHSLDEHQVADFIPASSIPPNHTVIGTRWVFKVKADGKFKARLVIQGWSQKHGIDCGSTFAPVCRLESQIMLLALATAKDWTVHALDVQVAFLNGKLKESIDIWVAP----------KPN-----------------WNHTIDNKLRSMGFAPTISDPCV-----NDDDILVTEPMDELLMDVRNQ 573 VPNT+KQA SP + +W +AM KEL SLD+H VAD IP SS+P +VIGTRWV++VK DG+FKAR+V+QGW+Q+HGIDC +TFAPVC++ SQ +LLA+A A+ W V A+DVQ AFLNGKL E + + AP KP WN TID LR GF PT SDPCV + I++T +D++L+ V + Sbjct: 643 VPNTYKQAMNSPQSTEWEQAMLKELASLDDHDVADLIPVSSVPAGCSVIGTRWVYRVKTDGRFKARVVVQGWAQQHGIDCFTTFAPVCKIGSQRLLLAIAAAQGWPVIAMDVQTAFLNGKLSEDVYTYQAPGFEKIESSTGKPLVWKLKKSLYGLRQSPSVWNLTIDKDLRGKGFTPTASDPCVYTKGSGNSYIMLTLFVDDILLTVATR 852
BLAST of mRNA_H-paniculata_contig14315.2607.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE) HSP 1 Score: 166 bits (421), Expect = 1.090e-40 Identity = 91/270 (33.70%), Postives = 145/270 (53.70%), Query Frame = 1 Query: 28 SSYTVPNTFKQATKSPYTDKWMEAMKKELHSLDEHQVADFIPASSIPPNHTVIGTRWVFKVKADGKFKARLVIQGWSQKHGIDCGSTFAPVCRLESQIMLLALATAKDWTVHALDVQVAFLNGKLKESIDIWVA----------------------------PKPNWNHTIDNKLRSMGFAPTISDPCVND--------------DDILVTEPMDELLMDVRNQLMNKFTITDLGEVSLVLGLEVLRNKQTSTLQLSQHKFV*VQHVIGK 711 +S VP T+++A +S D+W AM KE+ SL +H VAD +P S+PP IG+RW++K+KA G KARL++QGW Q+HGIDCG T+APV R SQ++L+A+A + + V +DV AFL ++E + + A P+ N+ + ++ +GF +SDPCV DD + ++ D++ QL +KF +TD G L+LG+E+ ++ + +SQHK+ V +++ K Sbjct: 885 ASIPVPTTYQEAMRSMDADQWKAAMDKEMKSLKDHDVADLVPIQSLPPGAKPIGSRWLYKMKATGVMKARLIVQGWGQRHGIDCGGTYAPVSRFSSQLVLMAIAAERGYVVETMDVVTAFLQSNVEEEVYVRQAKGYEITDEVTGLPLVMKLKKSLYGLKQSPR-NFGNAFAKGIKEIGFTALLSDPCVYVYGAGPTYAILCVYVDDCTLAGKTPSVVQDLKKQLSDKFKMTDGGPAELLLGMEI--SQSDGEIIVSQHKY--VMNILDK 1149
BLAST of mRNA_H-paniculata_contig14315.2607.1 vs. uniprot
Match: A0A6H5K9R3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9R3_9PHAE) HSP 1 Score: 165 bits (417), Expect = 2.440e-40 Identity = 99/259 (38.22%), Postives = 142/259 (54.83%), Query Frame = 1 Query: 40 VPNTFKQATKSPYTDKWMEAMKKELHSLDEHQVADFIPASSIPPNHTVIGTRWVFKVKADGKFKARLVIQGWSQKHGIDCGSTFAPVCRLESQIMLLALATAKDWTVHALDVQVAFLNGKLKESIDIWVAPKPN-----------------------------WNHTIDNKLRSMGFAPTISDPCV-----ND---------DDILVTEPMDELLMDVRNQLMNKFTITDLGEVSLVLGLEVLRNKQTSTLQLSQHKFV 687 +PNTFK+A SP T + A+ KEL S +H+V +P +S+P + V+GTR+VFK KAD +FK RLV+QG Q+ GID G +A VCR+ S + A+A + W V +DV VAFL + + D+WV P P W TID L +GF PT SDPCV D +DIL++ +L+ D++ +L ++F ITD+GEV L+LG++V R+ + TL +SQ +V Sbjct: 379 IPNTFKEAINSPETKQCKVAIGKELDSRAKHRVFKLVPITSVPKHEKVLGTRFVFKQKADERFKVRLVVQGHVQESGIDDGRRYARVCRIGSVRIFFAIACERGWPVWQMDVAVAFLQPTIDK--DVWVKPAPGQDAKDPATGGIMVYKLERSLYGLAQSPVLWYDTIDEVLVVIGFRPTQSDPCVYIHGSGDTLVILTLYVNDILISGKDPDLVADLKKELQDRFEITDIGEVRLILGMKVTRSYENGTLVVSQKGYV 635
BLAST of mRNA_H-paniculata_contig14315.2607.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE) HSP 1 Score: 160 bits (405), Expect = 1.450e-38 Identity = 93/255 (36.47%), Postives = 138/255 (54.12%), Query Frame = 1 Query: 40 VPNTFKQATKSPYTDKWMEAMKKELHSLDEHQVADFIPASSIPPNHTVIGTRWVFKVKADGKFKARLVIQGWSQKHGIDCGSTFAPVCRLESQIMLLALATAKDWTVHALDVQVAFLNGKLKESIDI-------------------------WVAPKP-NWNHTIDNKLRSMGFAPTISDPCV-----NDDDILVTEPMDELLMD---------VRNQLMNKFTITDLGEVSLVLGLEVLRNKQTSTLQLSQHKF 684 VP T ++A SP KW A ++E+ SL + +V +P S++PP I ++WVFK KADG FK R+V QGW+Q G+DCGST+APVCR++S M+ + + +DV AFL ++E + + +A P NW +TID L +GF SDPCV N I +T +D+LL+ V+ +L +F +TDLGE SLVLG+E+ R+++ +TL +SQ + Sbjct: 1150 VPRTIQEARASPDATKWNAAAEREMKSLSDRKVYKLVPRSAVPPERKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAY 1404
BLAST of mRNA_H-paniculata_contig14315.2607.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE) HSP 1 Score: 160 bits (405), Expect = 1.480e-38 Identity = 93/255 (36.47%), Postives = 138/255 (54.12%), Query Frame = 1 Query: 40 VPNTFKQATKSPYTDKWMEAMKKELHSLDEHQVADFIPASSIPPNHTVIGTRWVFKVKADGKFKARLVIQGWSQKHGIDCGSTFAPVCRLESQIMLLALATAKDWTVHALDVQVAFLNGKLKESIDI-------------------------WVAPKP-NWNHTIDNKLRSMGFAPTISDPCV-----NDDDILVTEPMDELLMD---------VRNQLMNKFTITDLGEVSLVLGLEVLRNKQTSTLQLSQHKF 684 VP T ++A SP KW A ++E+ SL + +V +P S++PP I ++WVFK KADG FK R+V QGW+Q G+DCGST+APVCR++S M+ + + +DV AFL ++E + + +A P NW +TID L +GF SDPCV N I +T +D+LL+ V+ +L +F +TDLGE SLVLG+E+ R+++ +TL +SQ + Sbjct: 1315 VPRTIQEARASPDATKWNAAAEREMKSLSDRKVYKLVPRSAVPPERKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAY 1569
BLAST of mRNA_H-paniculata_contig14315.2607.1 vs. uniprot
Match: A0A6H5KE92_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE92_9PHAE) HSP 1 Score: 157 bits (398), Expect = 7.700e-38 Identity = 90/259 (34.75%), Postives = 135/259 (52.12%), Query Frame = 1 Query: 40 VPNTFKQATKSPYTDKWMEAMKKELHSLDEHQVADFIPASSIPPNHTVIGTRWVFKVKADGKFKARLVIQGWSQKHGIDCGSTFAPVCRLESQIMLLALATAKDWTVHALDVQVAFLNGKLKESIDIWVAPKPN-----------------------------WNHTIDNKLRSMGFAPTISDPCVND--------------DDILVTEPMDELLMDVRNQLMNKFTITDLGEVSLVLGLEVLRNKQTSTLQLSQHKFV 687 +PNT+ +A SP ++W A KE+ +L +H V + +P SS+P ++GT++VFK K DG+FKARLV+ G Q+ G D G ++APVCR+ S M A+ +W ++ LDV AFLN D++V P P WN T+D L G+ T SDPCV DDIL+T +L+ + +L ++F +TD+GEV +LG++V R+ + TL +SQ +V Sbjct: 341 IPNTYDEAMSSPQREEWKGACSKEMDNLRKHNVYNLVPLSSVPKGEKILGTKFVFKKKLDGRFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDR--DVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYV 597
BLAST of mRNA_H-paniculata_contig14315.2607.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE) HSP 1 Score: 157 bits (397), Expect = 1.010e-37 Identity = 90/255 (35.29%), Postives = 135/255 (52.94%), Query Frame = 1 Query: 40 VPNTFKQATKSPYTDKWMEAMKKELHSLDEHQVADFIPASSIPPNHTVIGTRWVFKVKADGKFKARLVIQGWSQKHGIDCGSTFAPVCRLESQIMLLALATAKDWTVHALDVQVAFLNGKLKESIDIWVAP--------------------------KPNWNHTIDNKLRSMGFAPTISDPCV-----NDDDILVTEPMDELLMD---------VRNQLMNKFTITDLGEVSLVLGLEVLRNKQTSTLQLSQHKF 684 VP T ++A P ++W A ++E+ SL E QV +P +++PP I ++WVFK KA G FK RLV QGW+Q G+DCG+T+APVCR +S ML +A + + +DV AFL + E++ + P NW HTID L +GF P SD CV +D + +T +D+LL+ ++ +L +F +TD+GEV LVLG+E+ R++ TL +SQ + Sbjct: 458 VPRTIEEARAMPDGEQWNAAAEREIASLKERQVYKLVPRTAVPPGRKRIKSKWVFKRKAGGSFKGRLVAQGWNQVPGLDCGNTYAPVCRFQSIRMLACIAVQFNLELDQMDVSTAFLYADILENVFVEQPPGFEVKDKDGGDLVMQLQKSLYGLAQSPSNWFHTIDPFLVEIGFVPLKSDTCVYLYDHDDVQVYLTLYVDDLLLAGNNSRAISMIKKKLTQRFKMTDMGEVKLVLGMEIKRDRNQGTLTISQEAY 712
BLAST of mRNA_H-paniculata_contig14315.2607.1 vs. uniprot
Match: A0A6H5KCZ9_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCZ9_9PHAE) HSP 1 Score: 155 bits (392), Expect = 1.450e-37 Identity = 82/252 (32.54%), Postives = 135/252 (53.57%), Query Frame = 1 Query: 40 VPNTFKQATKSPYTDKWMEAMKKELHSLDEHQVADFIPASSIPPNHTVIGTRWVFKVKADGKFKARLVIQGWSQKHGIDCGSTFAPVCRLESQIMLLALATAKDWTVHALDVQVAFLNGKLKESIDIWVA----------------------------PKPNWNHTIDNKLRSMGFAPTISDPCVNDDDILVTEPMDELLMDVRNQLMNKFTITDLGEVSLVLGLEVLRNKQTSTLQLSQHKFV*VQHVIGK 711 +P T+++A +S D+W AM KE+ SL +H VAD +P +PP IG+RW++K+KA G KARL++QGW Q+HGIDCG T+ PV R SQ++ +A+A + + V +DV AFL K++E + + A P+ N+ + ++ +G +SDPC + ++ QL +KF +TD G L+LG+E+ +++ + +SQHK+ V +++ K Sbjct: 325 IPTTYQEAMRSMDADQWKAAMDKEIRSLKDHDVADLVPVQRLPPGAKPIGSRWLYKMKATGVMKARLIVQGWGQRHGIDCGGTYGPVSRFSSQLVFMAIAAERGYDVETMDVVTAFLQSKVEEEVYVRQAKGYEITDEVTGLPLVMKLKKSLYGLKQSPR-NFGNAFAKGIKEIGSTALLSDPC-------------DTKCCLKKQLSDKFKMTDGGPAELLLGMEI--SQRDGEITVSQHKY--VMNILDK 558
BLAST of mRNA_H-paniculata_contig14315.2607.1 vs. uniprot
Match: A0A6H5KTY2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTY2_9PHAE) HSP 1 Score: 152 bits (384), Expect = 7.240e-37 Identity = 89/259 (34.36%), Postives = 135/259 (52.12%), Query Frame = 1 Query: 40 VPNTFKQATKSPYTDKWMEAMKKELHSLDEHQVADFIPASSIPPNHTVIGTRWVFKVKADGKFKARLVIQGWSQKHGIDCGSTFAPVCRLESQIMLLALATAKDWTVHALDVQVAFLNGKLKESIDIWVAPKPN-----------------------------WNHTIDNKLRSMGFAPTISDPCV------ND--------DDILVTEPMDELLMDVRNQLMNKFTITDLGEVSLVLGLEVLRNKQTSTLQLSQHKFV 687 +PNT+ +A SP ++W A KE+ ++ +H V + +P SS+ ++GT++VFK K DG+FKARLV+ G Q+ G D G ++APVCR+ S M A+ +W ++ LDV AFLN D++V P P WN T+D L G+ T SDPCV N DDIL+T +L+ + +L ++F +TD+GEV +LG++V R+ + TL +SQ +V Sbjct: 185 IPNTYDEAMSSPQREEWKGACSKEMDNMRKHDVYNLVPLSSVLKGEKILGTKFVFKKKLDGRFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDR--DVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNSIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVPRDYEQRTLAISQEHYV 441
BLAST of mRNA_H-paniculata_contig14315.2607.1 vs. uniprot
Match: A0A6H5KS50_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS50_9PHAE) HSP 1 Score: 154 bits (388), Expect = 7.400e-37 Identity = 89/256 (34.77%), Postives = 131/256 (51.17%), Query Frame = 1 Query: 40 VPNTFKQATKSPYTDKWMEAMKKELHSLDEHQVADFIPASSIPPNHTVIGTRWVFKVKADGKFKARLVIQGWSQKHGIDCGSTFAPVCRLESQIMLLALATAKDWTVHALDVQVAFLNGKLKESIDIWVAPKPN-----------------------------WNHTIDNKLRSMGFAPTISDPCVND---------------DDILVTEPMDELLMDVRNQLMNKFTITDLGEVSLVLGLEVLRNKQTSTLQLSQ 675 +PNT+ +A SP ++W A KE+ +L +H V + +P SS+P ++GT++VF K DG+FKARLV+ G Q G D G ++APVCR+ S M A+ +W ++ LDV AFLN D++V P P WN T+D L G+ T SDPCV DDIL+T +L+ + +L N+F +TD+GEV +LG++V R+ + TL +SQ Sbjct: 284 IPNTYDEAMSSPQREEWKGACSKEMDNLRKHNVYNLVPLSSVPKGEQILGTKFVFTKKLDGRFKARLVVGGHRQAPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDR--DVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVCLTSGNTIVILTVCVDDILITGGDQQLVDQPKKELTNRFEMTDMGEVKRILGIDVQRDYEQGTLAISQ 537 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14315.2607.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig14315.2607.1 >prot_H-paniculata_contig14315.2607.1 ID=prot_H-paniculata_contig14315.2607.1|Name=mRNA_H-paniculata_contig14315.2607.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=128bp MSSANPTKTPGTKTGQSTASNNDSLLDAAVTTEYQAMVGSLIFLTQFTRFback to top mRNA from alignment at H-paniculata_contig14315:59..1572+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig14315.2607.1 ID=mRNA_H-paniculata_contig14315.2607.1|Name=mRNA_H-paniculata_contig14315.2607.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1514bp|location=Sequence derived from alignment at H-paniculata_contig14315:59..1572+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig14315:59..1572+ >mRNA_H-paniculata_contig14315.2607.1 ID=mRNA_H-paniculata_contig14315.2607.1|Name=mRNA_H-paniculata_contig14315.2607.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=768bp|location=Sequence derived from alignment at H-paniculata_contig14315:59..1572+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |