mRNA_H-paniculata_contig1431.2603.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1431.2603.1
Unique NamemRNA_H-paniculata_contig1431.2603.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1431.2603.1 vs. uniprot
Match: A0A6H5L3G2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3G2_9PHAE)

HSP 1 Score: 571 bits (1471), Expect = 1.450e-187
Identity = 389/786 (49.49%), Postives = 455/786 (57.89%), Query Frame = 2
Query:  464 PCRLEAVVPLSATALPSSLLESG-------------GGRVR--VALSDFIARRFQVTIAG-SPMARSFGIRSG----PIGPFCLETNWVRVSSGAGGCGCSITVVLDVTGAPASPW-------GFLQDASGVKGGSDGGVLAGVL-GVVKKALLGCDQRGGGLNANQARSHVKCIMDQRHLRDLVTSSNGIAFIADGAILPRIGGAENVPMKVSQGAIPFQSPPSLRHEFTLPHRGIISGMLLPRGVTIIVGGGYHGKSTLLRALAVGVYDKAPGDGREFAVTDPNAVTVRAEDGRSVSGVDISPFISALPTSVA-RPAQESDEGAEKGSGRVGATVAVAEAKTPAATSGEGVERDCR----------STKCFSTRGASGSTSQAANVMEALEAGATALLLDEDTCAGNFMIRDSRMRAMVSHEPITPFIYRVSNLWLELGVSSVIVVGGCGDYFDVHDTAILVDNYIAMDATERAHSISRRFCVGRVQFAGRGLVHRLQWPGNLSPRTVVPESVFATRKKSAKRRAWAACVNEYSRSVPKR---GCGDVNATNMTNGTESAEDTVVAKQQQDTSVVVATVNVNGAGGAVGMGSAWPECVDEDSQVEEVDHEEEPVG---------GGISRLCSCTCYCGAAGSLAGDDGNTVRVGNASADVSRVEQIVGGAAQTRGCALGVEWVLRATQRSPG-LTVGRALDALDAALRKGEGSG------LAPLLELTNNLERRGAGGDDVSSYGP-----------VAKPRRFEVAAALNRLAGVRFACAASV 2614
            P RL A    SATALP +  +S              G R    VAL DF+ARR    IA  SP A S GIRS      +G F LETN   VS+  G    +++VV +V  A            G  Q+    +G   G  +A VL G+VK+ALLG    GGGL+A  AR+HV+ + DQRHLR LV +S+G+AF+ADG +LPR GG+++ PM++S+GA+PF SP SLR EF LPHRG++ GML+PRGVT+IVGGGYHGKSTLLRALA+GVYDK PGDGRE AV DP AVT+RAEDGR VS VDISPFIS+LP++VA  P + +  G                        G  VE +            +T+ FST  ASGSTSQAANVMEALEAGATALLLDEDTCAGNFMIRDSRMRAMVSHEPITPFIYRVS+LWLELGVSSVIVVGGCGDYFDVHDTA+LVDNY+  DATERAHSISRRFCVGRVQ+AGRGLVHRL WPG+  PR VVPESV             AA V   S    KR   G GD     +                           V  + G+VG G  W   +D  S  +    E    G         G      +  C CG  G   G  G  V       D+SRV Q+VGG    RGCALGV++V RAT+RSPG L+V  ALD LDAA   G G G      L  L      +   G      ++              VA PRRFEVAAAL+R  GV+F  AA V
Sbjct:   79 PVRLAATATASATALPDACFQSTPSSPPPTAATNPTGNRTGKPVALCDFLARRLHAAIAAASPAASSHGIRSDYDSEAVGQFVLETNRAAVSAATG----AVSVVFEVLPARGXXXXXXXXXCGXAQEQQQDRG--RGAEMAEVLRGIVKQALLGSVHPGGGLDAAAARAHVESVEDQRHLRRLVAASDGVAFVADGCVLPRRGGSDDRPMEISRGAVPFHSPESLRREFRLPHRGVVKGMLVPRGVTVIVGGGYHGKSTLLRALAMGVYDKVPGDGRELAVADPGAVTIRAEDGRPVSSVDISPFISSLPSAVAVPPVRAAPAGGVAXXXXXXXXXXXXXXXXVGDAEGGTVETNXXXXXXXXXEGVTTERFSTGAASGSTSQAANVMEALEAGATALLLDEDTCAGNFMIRDSRMRAMVSHEPITPFIYRVSSLWLELGVSSVIVVGGCGDYFDVHDTALLVDNYVVSDATERAHSISRRFCVGRVQYAGRGLVHRLPWPGDPQPRAVVPESVLIR---------LAAAVGAGSNVKRKREGDGRGDDGGVGL---------------------------VEESSGSVGDG--WRRQIDSTSNGDRFCDESTIAGNAKGGRWNPGHPQAEDASPCCCGR-GHRGGSRGPPV-------DLSRVGQLVGGGGMERGCALGVDFVARATERSPGFLSVSGALDLLDAATGCGGGRGSDGGLGLEALFVRDTGVAAEGRDTQQATAAESTTANSILGRPLVALPRRFEVAAALHRFPGVQFRSAAPV 812          
BLAST of mRNA_H-paniculata_contig1431.2603.1 vs. uniprot
Match: D7FWM0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWM0_ECTSI)

HSP 1 Score: 348 bits (893), Expect = 2.300e-106
Identity = 218/393 (55.47%), Postives = 260/393 (66.16%), Query Frame = 2
Query:  548 VALSDFIARRFQVTIAG-SPMARSFGIRSG----PIGPFCLETNWVRVSSGAGGCGCSITVVLDVTGAPASPWGFLQDASGV-----KGGSDGGVLAGVL-GVVKKALLGCDQRGGGLNANQARSHVKCIMDQRHLRDLVTSSNGIAFIADGAILPRIGGAENVPMKVSQGAIPFQSPPSLRHEFTLPHRGIISGMLLPRGVTIIVGGGYHGKSTLLRALAVGVYDKAPGDGREFAVTDPNAVTVRAEDGRSVSGVDISPFISALPTSVARP-AQESDEGAEKGSGRVGATVAV---------AEAKTPAATSG---------EGVERDCRSTKCFSTRGASGSTSQAANVMEALEAGATALLLDEDTCAGNFMIRDSRMRAMVSHEPITPFI 1636
            VAL DF+ARR    IA  SP A S GIRS      +G F LETN   VS+  G    +++VV +V  A                   +    G  +A VL G+VK+ALLG    GGGL+A  AR+HV+ + DQRHLR LV +S+G+AF+ADG +LPR GG+++ PM++S+GA+PF+SP SLR EF LPHRG++ GML+PRGVT+IVGGGYHGKSTLLRALAVGVYDK PGDGRE AV DP AVT+RAEDGR VS VDISPFIS+LP++VA P A+ +  G                       AE  T     G         EGV     +T+ FST  ASGSTSQAANV+EALEAGATALLLDEDTCAGNFMIRDSRMRAMVSHEPITP +
Sbjct:  109 VALCDFLARRLHAAIAAASPAASSHGIRSDYDSEAVGQFVLETNRAAVSAATG----AVSVVFEVLPARGXXXXXXXXXXXXXXXXXQDRGRGAEMAEVLRGIVKQALLGSVHPGGGLDAAAARAHVESVEDQRHLRRLVAASDGVAFVADGCVLPRRGGSDDRPMEISRGAVPFRSPESLRGEFRLPHRGVVKGMLVPRGVTVIVGGGYHGKSTLLRALAVGVYDKVPGDGRELAVADPGAVTIRAEDGRPVSAVDISPFISSLPSAVAAPPARAAPVGXXXXXXXXXXXXXXXXXXXXXXXAEGGTAETNGGSXXXXXXXXEGV-----TTERFSTGAASGSTSQAANVVEALEAGATALLLDEDTCAGNFMIRDSRMRAMVSHEPITPVV 492          
BLAST of mRNA_H-paniculata_contig1431.2603.1 vs. uniprot
Match: A0A7S2AK97_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AK97_9STRA)

HSP 1 Score: 294 bits (752), Expect = 9.970e-88
Identity = 160/324 (49.38%), Postives = 206/324 (63.58%), Query Frame = 2
Query:  884 RSHVKCIMDQRHLRDLVTSSNGIAFIADGAILPRIGGAENVPMKVSQGAIPFQSPPSLRHEFTLPHRG-IISGMLLPRGVTIIVGGGYHGKSTLLRALAVGVYDKAPGDGREFAVTDPNAVTVRAEDGRSVSGVDISPFISALPTSVARPAQESDEGAEKGSGRVGATVAVAEAKTPAATSGEGVERDCRSTKCFSTRGASGSTSQAANVMEALEAGATALLLDEDTCAGNFMIRDSRMRAMVSHEPITPFIYRVSNLWLELGVSSVIVVGGCGDYFDVHDTAILVDNYIAMDATERAHSISRRFCVGRVQFAGRGLVHRLQWP 1852
            RS+V+ + +Q  LR  +  + G+ F+ADGA+LPR G  +  P+  + G +PF+SPPSL    T+   G  + GM++  GVT+I GGG+HGKSTLLRALA GVY+K PGDGREF VTD +A+TVRAEDGR V  VD+SPFI++LP+                                         +       FST  ASGSTSQAA V+EA+E GA  L++DEDT A NFM RD RMRA+V+HEPITP +YRV+ LW  LGVSS++V+GG GD+ DV D  +L+D+Y A DAT +A  IS+ F  G VQ+AGRG  HRL WP
Sbjct:   15 RSYVRSVEEQDGLRSALREAGGVGFVADGAMLPRRGDDDPRPVYAASGVVPFESPPSLAKTLTIRSTGRAVRGMMISAGVTLIAGGGFHGKSTLLRALAAGVYNKVPGDGREFVVTDASAMTVRAEDGRVVRSVDVSPFITSLPS-----------------------------------------KSNLDPSNFSTTCASGSTSQAAAVIEAVELGAKTLIIDEDTSAANFMSRDGRMRALVTHEPITPLLYRVTGLWESLGVSSIVVIGGNGDWLDVADCVVLLDDYKASDATRQAAFISKTFSSGLVQYAGRGSAHRLPWP 297          
BLAST of mRNA_H-paniculata_contig1431.2603.1 vs. uniprot
Match: UPI0005611AC1 (ABC-ATPase domain-containing protein n=1 Tax=Leptolyngbya sp. KIOST-1 TaxID=1229172 RepID=UPI0005611AC1)

HSP 1 Score: 290 bits (742), Expect = 1.050e-83
Identity = 199/485 (41.03%), Postives = 269/485 (55.46%), Query Frame = 2
Query:  464 PCRLEAVVPLSATALPSSLLESGGGRVRVALSDFIARRFQVTIAGSPMARSFGIRSGPIG-----PFCLETNWVRVSSGAGGCGCSITVVLDVT-GAPASPWGFLQDASGVKGGSDGGVLAGVL-GVVKKALLGCDQRGGGLNANQARSHVKCIMDQRHLRDLVTSSNGIAFIADGAILPRIGGAENVPMKVSQGAIPFQSPPSLRHEFTLPHRGIISGMLLPRGVTIIVGGGYHGKSTLLRALAVGVYDKAPGDGREFAVTDPNAVTVRAEDGRSVSGVDISPFISALPTSVARPAQESDEGAEKGSGRVGATVAVAEAKTPAATSGEGVERDCRSTKCFSTRGASGSTSQAANVMEALEAGATALLLDEDTCAGNFMIRDSRMRAMVS--HEPITPFIYRVSNLWLELGVSSVIVVGGCGDYFDVHDTAILVDNYIAMDATERAHSISRRFCVGRVQFAGRGLVHRLQWPGNLSPRTVVPESV 1891
            P R+  VVP +    P+ L E     +  ALSD++ R F     GS      G +SG +G        L  +  RV++GA        V L  T G PA    F +  +G +      +L G +  +V++ L+      G L+A Q   HV    D   LR  ++  + +AF+ADGAILPR  G +  P+  +  A+PF+SP SLR   T PH G I+GM +P G+T+IVGGGYHGKSTLLRA+  GVY+  PGDGR   VTDP AV VRAEDGRS++GV+I+PFI +LP                                             +ST+ FST  ASGSTSQAAN++EA+EAGATALL+DEDT A NFMIRD RM+A+++   EPITPF+ +V  L+ +  +S+V+V+GG GDYFDV DT I +D ++  D TERA +I+      R +  G+         G +SPRTV P+S+
Sbjct:   49 PSRVRVVVPQAVAGFPNRLWELPCRAI--ALSDYLTREFHRAAQGSQRTSGSG-KSGLVGIVRPSQAILNRSAARVTAGA--------VELRFTVGLPA----FGRRIAGRQAAD---LLCGTVPALVRQTLVY-----GALDAAQLEHHVNTAEDAEALRSQLSHHHLVAFVADGAILPRRSGVDECPL--ADQAVPFKSPDSLRVTLTCPHAGAITGMGVPCGITLIVGGGYHGKSTLLRAIEAGVYNHVPGDGRHQVVTDPAAVKVRAEDGRSIAGVNIAPFIGSLPQG-------------------------------------------KSTQTFSTPNASGSTSQAANIIEAIEAGATALLVDEDTSATNFMIRDRRMQALIAKDREPITPFVDKVQQLYSDYNISTVLVMGGSGDYFDVADTVIALDEFVPQDVTERAKTIAAELKTERDREGGQSF-------GAISPRTVQPDSI 458          
BLAST of mRNA_H-paniculata_contig1431.2603.1 vs. uniprot
Match: K9TRD5_9CYAN (Putative ATPase of the ABC class n=2 Tax=Oscillatoriaceae TaxID=1892254 RepID=K9TRD5_9CYAN)

HSP 1 Score: 288 bits (736), Expect = 8.360e-83
Identity = 198/478 (41.42%), Postives = 258/478 (53.97%), Query Frame = 2
Query:  464 PCRLEAVVPLSATALPSSLLESGGGRVRVALSDFIARRFQVTIAGSPMARSFGIRSGPIG-----PFCLETNWVRVSSGAGGCGCSITVVLDVTGAPASPWGFLQDASGVKGGSDGGVLAGVLGVVKKALLGCDQRGGGLNANQARSHVKCIMDQRHLRDLVTSSNGIAFIADGAILPRIGGAENVPMKVSQGAIPFQSPPSLRHEFTLPHRGIISGMLLPRGVTIIVGGGYHGKSTLLRALAVGVYDKAPGDGREFAVTDPNAVTVRAEDGRSVSGVDISPFISALPTSVARPAQESDEGAEKGSGRVGATVAVAEAKTPAATSGEGVERDCRSTKCFSTRGASGSTSQAANVMEALEAGATALLLDEDTCAGNFMIRDSRMRAMVSHE--PITPFIYRVSNLWLELGVSSVIVVGGCGDYFDVHDTAILVDNYIAMDATERAHSISRRFCVGRVQFAGR---GLVHRLQWPGNLSP 1867
            P +L   VP S    P  L  S       AL D++ R F          R  G +SG I         LE     ++S           +    G PA     L   +G     D      +  +V+KAL   +     LN  Q R+ V+ I D   LRD +   N IAFIA+GAILPR  G ++ P+  ++ AIPF SP SL+ EF  P+RG I+GM +P G+T+IVGGGYHGKSTLLRA+ VGVY+  PGDGREF +TDP A+ +RAEDGRSV GVDISPFI+ LP                                             RST+ FST  ASGSTSQAAN+MEALEAG T LL+DEDT A NFMIRD RM+A+++ E  PITPFI ++ +L   LGVS+++V+GG GDYFDV   A+ +DN++A D T+RA +++  +  GR    G     + +R+  P +L P
Sbjct:   48 PSKLSVRVPQSVAGFPQELYHSPSRNT--ALGDYLTREFTQAARQVSTRRGTG-KSGQIAIAKVTQEVLERTCAFINSDE-------VEIRFTVGLPAQGRRILGHLAGEMLCDD------IPRIVEKALFYRN-----LNVAQIRTQVETIEDADWLRDRLPEQNLIAFIANGAILPRRSGVDDRPLNPTE-AIPFVSPDSLQVEFNCPNRGKITGMGIPSGITLIVGGGYHGKSTLLRAIEVGVYNHIPGDGREFVITDPGAMKIRAEDGRSVVGVDISPFINHLPQG-------------------------------------------RSTQQFSTANASGSTSQAANIMEALEAGTTVLLVDEDTAATNFMIRDRRMQALIAKEKEPITPFIDKIKSL-TTLGVSTILVMGGSGDYFDVASRAVAMDNFVAYDVTDRAKAVAAEYATGRQSEGGEDFGAIANRVPIPNSLDP 459          
BLAST of mRNA_H-paniculata_contig1431.2603.1 vs. uniprot
Match: A0A6H2NQ39_9CYAN (ATPase n=2 Tax=Pseudanabaenales TaxID=2881377 RepID=A0A6H2NQ39_9CYAN)

HSP 1 Score: 283 bits (724), Expect = 3.960e-81
Identity = 193/484 (39.88%), Postives = 266/484 (54.96%), Query Frame = 2
Query:  464 PCRLEAVVPLSATALPSSLLESGGGRVRVALSDFIARRFQVTIAGSPMARSFGIRSGPIGPFCLETNWVRVSSGAGGCGCSITVVLDVTGAPASPWGFLQDASGVKGGSDGGVLAGVLGVVKKALLGCDQRGGGLNANQARSHVKCIMDQRHLRDLVTSSNGIAFIADGAILPRIGGAENVPMKVSQGAIPFQSPPSLRHEFTLPHRGIISGMLLPRGVTIIVGGGYHGKSTLLRALAVGVYDKAPGDGREFAVTDPNAVTVRAEDGRSVSGVDISPFISALPTSVARPAQESDEGAEKGSGRVGATVAVAEAKTPAATSGEGVERDCRSTKCFSTRGASGSTSQAANVMEALEAGATALLLDEDTCAGNFMIRDSRMRAMVS--HEPITPFIYRVSNLWLELGVSSVIVVGGCGDYFDVHDTAILVDNYIAMDATERAHSISRRFCVGRVQFAGRGLVHRLQWPGNLSPRTVVPESVFATRKK 1909
            P R+  VVP S    P+ +       +  AL+D++ R F   +AGS   +S   +SG I      +  +   S A     ++ +   V G PA    F +  +G +        A +L      L+      G LN      HV+   D   LR  + + N +AF+ADGAILPR  G +  P+  +  A+PFQSPPSLR   T PH G ++GM +P+G+T+IVGGGYHGKSTLLRA+A G+Y+  PGDGR   VTDP AV VRAEDGRS++GV+ISPFI +LP                                             +ST+ FST  ASGSTSQAAN++EA+EAGATALL+DEDT A NFMIRD RM+A+++   EPITPFI +V  L  + G+S+V+V+GG GDYFDV DT I +D +   D T +A +I+ ++   R +  G          G+L+ RT+ P+S+  ++ K
Sbjct:   49 PSRVRVVVPQSVAGFPAEVWHPPCRAI--ALADYLTREFH-QVAGSSQRKSGSGKSGLIS-IVRPSQAILARSAARVTAEAVELRFSV-GLPA----FGRRIAGYQ-------AADLLCETVPDLVAQTLFYGALNGASLAQHVQTAEDAEALRSQLAAHNLVAFVADGAILPRRSGVDERPL--ADQAVPFQSPPSLRVTLTCPHAGDVTGMGIPQGITLIVGGGYHGKSTLLRAIASGIYNHIPGDGRHQVVTDPTAVKVRAEDGRSIAGVNISPFIGSLPQG-------------------------------------------KSTQQFSTPNASGSTSQAANIIEAIEAGATALLVDEDTSATNFMIRDRRMQALIAKDREPITPFIDKVQQLDTDYGMSTVLVMGGSGDYFDVADTVIAMDEFCPQDVTSQAKAIAAQYQTERDREGGAHF-------GDLTRRTIQPQSIDPSKGK 464          
BLAST of mRNA_H-paniculata_contig1431.2603.1 vs. uniprot
Match: A0A352X460_9CYAN (ATPase n=1 Tax=Cyanobacteria bacterium UBA11367 TaxID=2055774 RepID=A0A352X460_9CYAN)

HSP 1 Score: 282 bits (722), Expect = 7.430e-81
Identity = 190/487 (39.01%), Postives = 262/487 (53.80%), Query Frame = 2
Query:  464 PCRLEAVVPLSATALPSSLLESGGGRVRVALSDFIARRFQVTIAGSPMARSFGIRSGPI-----GPFCLETNWVRVSSGAGGCGCSITVVLDVTGAPASPWGFLQDASGVKGGSDGGVLAGVLGVVKKALLGCDQRGGGLNANQARSHVKCIMDQRHLRDLVTSSNGIAFIADGAILPRIGGAENVPMKVSQGAIPFQSPPSLRHEFTLPHRGIISGMLLPRGVTIIVGGGYHGKSTLLRALAVGVYDKAPGDGREFAVTDPNAVTVRAEDGRSVSGVDISPFISALPTSVARPAQESDEGAEKGSGRVGATVAVAEAKTPAATSGEGVERDCRSTKCFSTRGASGSTSQAANVMEALEAGATALLLDEDTCAGNFMIRDSRMRAMVSH--EPITPFIYRVSNLWLELGVSSVIVVGGCGDYFDVHDTAILVDNYIAMDATERAHSISRRFCVGRVQFAGRGLVHRLQWPGNLSPRTVVPESVFATR 1903
            P ++  +VP S    PS L +S    +  AL D+I R F+  +      R  G  SG I     G   LE +   ++            V  + G PA           + G     +L   + ++    L    +   LNA   + HV+   D   LR  +T    +AFI DGAILPR  G ++ P+  +  A+PFQSPPSL+ +F  P+RG++ GM +P+GVT+IVGGGYHGKSTLLRA+ +GVY+  PGDGRE  VT+P AV +RAEDGRS++ VDISPFI+ LP                                             RST+ FST  ASGSTSQAAN++EALEAG   LL+DEDT A NFMIRD RM+ +++   EPITPFI +V  L+ + GVS+++V+GG GDYFD+ DTAI +DN+   D T+ A  I+ ++   R++  G          G + PR ++PES+  +R
Sbjct:   49 PSQVRVIVPQSVAGFPSQLYQSLSRAI--ALRDYITREFERVVKNFSSHRGTG-NSGLIAITFVGQSILERSCTFINE-------KFVEVRFLVGLPAR-------GRSISGRQAVEMLCEDVPLIVNQTL----KYRALNAKAIQHHVETAEDADWLRQELTKQGLVAFIPDGAILPRTSGVDDRPL--ADEAVPFQSPPSLQVKFNCPNRGLLVGMGIPKGVTLIVGGGYHGKSTLLRAIELGVYNHIPGDGRELVVTNPAAVKIRAEDGRSIASVDISPFINQLPQG-------------------------------------------RSTRQFSTTNASGSTSQAANIIEALEAGTELLLVDEDTAATNFMIRDRRMQQLIAKDKEPITPFIDKVRQLYTDCGVSTILVMGGSGDYFDLADTAIAMDNFQPQDVTKEAKEIAEKYRTERLKEGGDKF-------GTIHPRILLPESIDPSR 462          
BLAST of mRNA_H-paniculata_contig1431.2603.1 vs. uniprot
Match: UPI00034AF133 (ABC-ATPase domain-containing protein n=1 Tax=Oscillatoria sp. PCC 10802 TaxID=1173028 RepID=UPI00034AF133)

HSP 1 Score: 282 bits (722), Expect = 7.430e-81
Identity = 196/487 (40.25%), Postives = 261/487 (53.59%), Query Frame = 2
Query:  464 PCRLEAVVPLSATALPSSLLESGGGRVRVALSDFIARRFQVTIAGSPMARSFG----IRSGPIGPFCLETNWVRVSSGAGGCGCSITVVLDVTGAPASPWGFLQDASGVKGGSDGGVLAG-VLGVVKKALLGCDQRGGGLNANQARSHVKCIMDQRHLRDLVTSSNGIAFIADGAILPRIGGAENVPMKVSQGAIPFQSPPSLRHEFTLPHRGIISGMLLPRGVTIIVGGGYHGKSTLLRALAVGVYDKAPGDGREFAVTDPNAVTVRAEDGRSVSGVDISPFISALPTSVARPAQESDEGAEKGSGRVGATVAVAEAKTPAATSGEGVERDCRSTKCFSTRGASGSTSQAANVMEALEAGATALLLDEDTCAGNFMIRDSRMRAMVSHE--PITPFIYRVSNLWLELGVSSVIVVGGCGDYFDVHDTAILVDNYIAMDATERAHSISRRFCVGRVQFAGRGLVHRLQWPGNLSPRTVVPESVFATR 1903
            P +L  ++P S    P  L  S    +  AL D++ R+F      S   R  G    I    +G   LE     ++            V  V G PA       D   + G     +L   +  +V+K+L     +   LNA + + HV+ + D   LR ++ +   +AFIADGAILPR  G +  P   +  A+PFQSPP+L+ EFT P+RG+I+GM +P GVT+IVGGGYHGKSTLL A+ +GVY+  PGDGREFAVT   AV +RAEDGR V+GVDISPF+  LP                                             RS   FST  ASGSTSQAAN+MEALEAGA  LL+DEDT A NFMIRD RM+ +V+ E  PI+PFI +V  L+ + GVS+++V+GG GDYFDV DT I ++N+   + TERA +I+R    GRV   G+         G +  R  VP+S+  +R
Sbjct:   50 PSKLRVLLPQSVAGTPRDLYRSRSREI--ALLDYLTRQFDRAARDSASRRGTGNSGLIAIAQLGQEVLERTSAFIND-------EFVEVRFVAGLPA-------DGRRILGRQAAQLLCDDIPQIVEKSL-----KYSRLNAAEIQRHVETVEDADWLRQMLPARGLVAFIADGAILPRRTGVDWRP---APDAVPFQSPPALQVEFTCPNRGLITGMGVPAGVTLIVGGGYHGKSTLLSAIELGVYNHIPGDGREFAVTQKEAVKIRAEDGRGVAGVDISPFVRHLPQG-------------------------------------------RSATEFSTMNASGSTSQAANIMEALEAGARLLLVDEDTAATNFMIRDRRMQMLVAKEKEPISPFIDKVRPLYQDAGVSTILVMGGSGDYFDVADTVIAMENFQPQEVTERARAIARECGTGRVSEGGQHF-------GRIPRRVPVPDSINPSR 462          
BLAST of mRNA_H-paniculata_contig1431.2603.1 vs. uniprot
Match: A0A6P0MSK6_9CYAN (ABC-ATPase domain-containing protein n=1 Tax=Symploca sp. SIO2C1 TaxID=2607783 RepID=A0A6P0MSK6_9CYAN)

HSP 1 Score: 281 bits (720), Expect = 1.320e-80
Identity = 192/487 (39.43%), Postives = 263/487 (54.00%), Query Frame = 2
Query:  464 PCRLEAVVPLSATALPSSLLESGGGRVRVALSDFIARRFQVTIAGSPMARSFGIRSGPI-----GPFCLETNWVRVSSGAGGCGCSITVVLDVTGAPASPWGFLQDASGVKGGSDGGVLAGVLGVVKKALLGCDQRGGGLNANQARSHVKCIMDQRHLRDLVTSSNGIAFIADGAILPRIGGAENVPMKVSQGAIPFQSPPSLRHEFTLPHRGIISGMLLPRGVTIIVGGGYHGKSTLLRALAVGVYDKAPGDGREFAVTDPNAVTVRAEDGRSVSGVDISPFISALPTSVARPAQESDEGAEKGSGRVGATVAVAEAKTPAATSGEGVERDCRSTKCFSTRGASGSTSQAANVMEALEAGATALLLDEDTCAGNFMIRDSRMRAMVSH--EPITPFIYRVSNLWLELGVSSVIVVGGCGDYFDVHDTAILVDNYIAMDATERAHSISRRFCVGRVQFAGRGLVHRLQWPGNLSPRTVVPESVFATR 1903
            P +L   +P S    P +L  S    +  AL D++ R+F      +   R  G +SG I     G   LE     ++         +  V  + G PA      +  SG++      +   +  +V K+LL      G L+  + +  V+ I D   LR  +   + +AFIADGA LPR  G +  P+   + A+PFQSPP L+ EFT P+RG+I+GM +P GVT+IVGGGYHGKSTLLRA+ +GVY+  PGDGRE  VT+P AV +RAEDGRS++GVDISPFI+ LP S                                           R T  FST  ASGSTSQAAN++EALEAGA  LL+DEDT A NFMIRD RM+ +++   EPITPFI +V  L+ + G+S+++V+GG GDYFDV DT I +DN+   D T +A  I+++    R    G          G ++PR  +PES+  +R
Sbjct:   46 PSKLRVQIPQSVAGFPPNLYNSPSREI--ALRDYLTRQFDEAAGENSSYRGSG-KSGLIAITHVGQEVLERTSAFINQ-------EVLEVRFLVGLPARG----RRISGLQAAEM--LCEDIPEIVDKSLLY-----GSLDPQEIQQQVETIEDADWLRQQLAERSLVAFIADGATLPRRSGIDTRPLL--EEAVPFQSPPQLQVEFTCPNRGLITGMGIPAGVTLIVGGGYHGKSTLLRAIELGVYNHIPGDGRELVVTNPAAVKIRAEDGRSIAGVDISPFINQLPQS-------------------------------------------RPTTNFSTPNASGSTSQAANIIEALEAGAQLLLVDEDTAATNFMIRDRRMQQLIAKDKEPITPFIDKVRQLYTDYGISTILVIGGSGDYFDVADTVIAMDNFQPTDVTSKAKEIAQQHRTERTSEGGNQF-------GKITPRIPLPESIDPSR 459          
BLAST of mRNA_H-paniculata_contig1431.2603.1 vs. uniprot
Match: A0A7C3BAR6_9CHLR (ABC-ATPase domain-containing protein (Fragment) n=1 Tax=Caldilineae bacterium TaxID=2420332 RepID=A0A7C3BAR6_9CHLR)

HSP 1 Score: 281 bits (720), Expect = 1.540e-80
Identity = 198/483 (40.99%), Postives = 262/483 (54.24%), Query Frame = 2
Query:  464 PCRLEAVVPLSATALPSSLLESGGGRVRVALSDFIARRFQVTIAGSPMARSFGIRSGPI-----GPFCLETNWVRVSSGAGGCGCSITVVLDVTGAPASPWGFLQDASGVKGGSDGGVLAGVLGVVKKALLGCDQRGGGLNANQARSHVKCIMDQRHLRDLVTSSNGIAFIADGAILPRIGGAENVPMKVSQGAIPFQSPPSLRHEFTLPHRGIISGMLLPRGVTIIVGGGYHGKSTLLRALAVGVYDKAPGDGREFAVTDPNAVTVRAEDGRSVSGVDISPFISALPTSVARPAQESDEGAEKGSGRVGATVAVAEAKTPAATSGEGVERDCRSTKCFSTRGASGSTSQAANVMEALEAGATALLLDEDTCAGNFMIRDSRMRAMVS--HEPITPFIYRVSNLWLELGVSSVIVVGGCGDYFDVHDTAILVDNYIAMDATERAHSISRRFCVGRVQFAGRGLVHRLQWPGNLSPRTVVPESV 1891
            P RL   VP S     +S+  +    +  AL DF+ RRF      +   R  G RSG +     G   LE   V V+S              V G PA+    L   +      D  ++      V++ALL  +Q    L       H++ + D   LR  + +   +AF+ADGAILPR  G ++ PM+  +GA+PF+SP SLR    LPH G I+GM +PRGVT+IVGGGYHGKSTLL A+  GVY+  PGDGREF VTD  AV VRAEDGR ++GVDISPFI+ LP  +                                            T+ F+T  ASGSTSQAAN++EALEAGA  LL+DEDT A NFMIRD RM+ +++  HEPITPFI +V  L+ + GVS+++V+GG GDYFDV DT I ++NY   DATERA  I+R++   R    G          G+++PR  +P+S+
Sbjct:   49 PSRLRVRVPQSVARFGTSMFSNKSREI--ALRDFLCRRFAAACRRTAERRGSG-RSGLLAMDTPGQEVLERTAVLVTS-------EWIEARFVAGLPAAGRRILGRQAVEMLCEDLPMI------VEQALLARNQPREAL-----MEHLRVVEDADALRQQLDALGLVAFVADGAILPRRSGVDDRPME--RGAVPFESPDSLRVTVELPHAGRITGMGIPRGVTLIVGGGYHGKSTLLAAIERGVYNHIPGDGREFVVTDAAAVKVRAEDGRRIAGVDISPFIANLPFGI-------------------------------------------DTRSFTTDNASGSTSQAANIIEALEAGARVLLVDEDTAATNFMIRDHRMQELIAKEHEPITPFIDKVRLLYQDYGVSTILVMGGSGDYFDVADTVIAMENYRPWDATERAKEIARKYAAERRPEGGERF-------GSITPRIPLPDSL 458          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1431.2603.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L3G2_9PHAE1.450e-18749.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWM0_ECTSI2.300e-10655.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2AK97_9STRA9.970e-8849.38Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
UPI0005611AC11.050e-8341.03ABC-ATPase domain-containing protein n=1 Tax=Lepto... [more]
K9TRD5_9CYAN8.360e-8341.42Putative ATPase of the ABC class n=2 Tax=Oscillato... [more]
A0A6H2NQ39_9CYAN3.960e-8139.88ATPase n=2 Tax=Pseudanabaenales TaxID=2881377 RepI... [more]
A0A352X460_9CYAN7.430e-8139.01ATPase n=1 Tax=Cyanobacteria bacterium UBA11367 Ta... [more]
UPI00034AF1337.430e-8140.25ABC-ATPase domain-containing protein n=1 Tax=Oscil... [more]
A0A6P0MSK6_9CYAN1.320e-8039.43ABC-ATPase domain-containing protein n=1 Tax=Sympl... [more]
A0A7C3BAR6_9CHLR1.540e-8040.99ABC-ATPase domain-containing protein (Fragment) n=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1431contigH-paniculata_contig1431:17939..24632 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score352.8
Seed ortholog evalue4.2e-94
Seed eggNOG ortholog2880.D7FWM0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Predicted ATPase of the ABC class
EggNOG OGs2QT9W@2759,COG3044@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size2824
Cds size2445
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1431.2603.1prot_H-paniculata_contig1431.2603.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1431 18174..24488 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929139.0200584-UTR-H-paniculata_contig1431:17938..181731622929139.0200584-UTR-H-paniculata_contig1431:17938..18173Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1431 17939..18173 +
1691480746.370265-UTR-H-paniculata_contig1431:17938..181731691480746.370265-UTR-H-paniculata_contig1431:17938..18173Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1431 17939..18173 +
1622929139.1293273-UTR-H-paniculata_contig1431:24488..246321622929139.1293273-UTR-H-paniculata_contig1431:24488..24632Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1431 24489..24632 +
1691480746.449511-UTR-H-paniculata_contig1431:24488..246321691480746.449511-UTR-H-paniculata_contig1431:24488..24632Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1431 24489..24632 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929139.0383863-CDS-H-paniculata_contig1431:18173..188361622929139.0383863-CDS-H-paniculata_contig1431:18173..18836Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1431 18174..18836 +
1691480746.382315-CDS-H-paniculata_contig1431:18173..188361691480746.382315-CDS-H-paniculata_contig1431:18173..18836Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1431 18174..18836 +
1622929139.0533924-CDS-H-paniculata_contig1431:19164..194141622929139.0533924-CDS-H-paniculata_contig1431:19164..19414Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1431 19165..19414 +
1691480746.3959885-CDS-H-paniculata_contig1431:19164..194141691480746.3959885-CDS-H-paniculata_contig1431:19164..19414Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1431 19165..19414 +
1622929139.0691946-CDS-H-paniculata_contig1431:19800..202251622929139.0691946-CDS-H-paniculata_contig1431:19800..20225Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1431 19801..20225 +
1691480746.4091663-CDS-H-paniculata_contig1431:19800..202251691480746.4091663-CDS-H-paniculata_contig1431:19800..20225Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1431 19801..20225 +
1622929139.0886557-CDS-H-paniculata_contig1431:21832..218891622929139.0886557-CDS-H-paniculata_contig1431:21832..21889Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1431 21833..21889 +
1691480746.419654-CDS-H-paniculata_contig1431:21832..218891691480746.419654-CDS-H-paniculata_contig1431:21832..21889Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1431 21833..21889 +
1622929139.1013417-CDS-H-paniculata_contig1431:22378..225281622929139.1013417-CDS-H-paniculata_contig1431:22378..22528Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1431 22379..22528 +
1691480746.429487-CDS-H-paniculata_contig1431:22378..225281691480746.429487-CDS-H-paniculata_contig1431:22378..22528Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1431 22379..22528 +
1622929139.1126235-CDS-H-paniculata_contig1431:23588..244881622929139.1126235-CDS-H-paniculata_contig1431:23588..24488Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1431 23589..24488 +
1691480746.4393444-CDS-H-paniculata_contig1431:23588..244881691480746.4393444-CDS-H-paniculata_contig1431:23588..24488Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1431 23589..24488 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1431.2603.1

>prot_H-paniculata_contig1431.2603.1 ID=prot_H-paniculata_contig1431.2603.1|Name=mRNA_H-paniculata_contig1431.2603.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=815bp
MSKLETPGQHAKDTFVLQEKQAVTTSARSVDASEKPERRAWAPAVGDTWD
LHLDSQAETAVRISLLSIPSPRHPTRPCRLEAVVPLSATALPSSLLESGG
GRVRVALSDFIARRFQVTIAGSPMARSFGIRSGPIGPFCLETNWVRVSSG
AGGCGCSITVVLDVTGAPASPWGFLQDASGVKGGSDGGVLAGVLGVVKKA
LLGCDQRGGGLNANQARSHVKCIMDQRHLRDLVTSSNGIAFIADGAILPR
IGGAENVPMKVSQGAIPFQSPPSLRHEFTLPHRGIISGMLLPRGVTIIVG
GGYHGKSTLLRALAVGVYDKAPGDGREFAVTDPNAVTVRAEDGRSVSGVD
ISPFISALPTSVARPAQESDEGAEKGSGRVGATVAVAEAKTPAATSGEGV
ERDCRSTKCFSTRGASGSTSQAANVMEALEAGATALLLDEDTCAGNFMIR
DSRMRAMVSHEPITPFIYRVSNLWLELGVSSVIVVGGCGDYFDVHDTAIL
VDNYIAMDATERAHSISRRFCVGRVQFAGRGLVHRLQWPGNLSPRTVVPE
SVFATRKKSAKRRAWAACVNEYSRSVPKRGCGDVNATNMTNGTESAEDTV
VAKQQQDTSVVVATVNVNGAGGAVGMGSAWPECVDEDSQVEEVDHEEEPV
GGGISRLCSCTCYCGAAGSLAGDDGNTVRVGNASADVSRVEQIVGGAAQT
RGCALGVEWVLRATQRSPGLTVGRALDALDAALRKGEGSGLAPLLELTNN
LERRGAGGDDVSSYGPVAKPRRFEVAAALNRLAGVRFACAASVGVPAAVG
SSVADGVDALEEKG*
back to top

mRNA from alignment at H-paniculata_contig1431:17939..24632+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1431.2603.1 ID=mRNA_H-paniculata_contig1431.2603.1|Name=mRNA_H-paniculata_contig1431.2603.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6694bp|location=Sequence derived from alignment at H-paniculata_contig1431:17939..24632+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGCAAACTGAGCGGTGGCGAGGTTGCTAGGTTCTGACGATAATGACTGC GTGATTGAACTCTACTACATCTGTCGGTGGGAAAGATTACAGCAGAGACT TTCCAAGGCAAGTTTTTTACGAAAGATAACAGTTCAGTGCTGTCACCGAC GCAGCCTCAACTGGCGTCAAACACCGTCAGTCACCACTGTATCGTGACTC GTTCCATTGCGTTGGCAATCTGATAATACAGTATCATGTCGAAGCTGGAA ACGCCAGGGCAACACGCAAAAGACACCTTTGTCTTGCAAGAAAAACAAGC TGTGACAACAAGCGCACGGAGCGTGGACGCTAGTGAAAAACCAGAGCGCC GAGCGTGGGCACCAGCTGTCGGGGATACGTGGGACCTGCACCTCGATAGC CAAGCGGAGACGGCAGTACGTATCTCCCTGCTTTCCATTCCATCTCCAAG ACACCCAACAAGACCATGCAGACTCGAAGCAGTAGTACCGCTCTCGGCAA CGGCGCTGCCGTCGTCGCTTCTTGAGTCTGGCGGAGGTCGAGTGCGCGTG GCCCTCTCGGACTTCATCGCTCGACGGTTTCAGGTCACCATCGCCGGGTC CCCGATGGCCCGCTCTTTTGGTATCCGGTCCGGCCCGATTGGTCCTTTTT GTCTTGAAACCAACTGGGTTCGGGTTAGCTCGGGTGCAGGCGGCTGTGGG TGCAGTATTACGGTTGTTCTGGACGTTACTGGTGCTCCCGCGAGCCCCTG GGGATTTCTTCAAGATGCATCTGGAGTTAAGGGTGGGAGTGATGGCGGAG TGTTGGCGGGTGTTTTAGGAGTGGTGAAGAAAGCTCTGTTGGGCTGCGAT CAGCGGGGAGGGGGACTGAACGCTAACCAAGCTCGATCGCACGTCAAGGT GAGCGGGAGAATCTTTCTAATCGTGACAGCACACTGCATTTACTTTTGTA GTAAAGGCTAAATGAAGGTTAGGATGGAAGCGCCTGAAATGTGTACCAAA GGACACCCAAAGGGAATAATGTTGGTACATCGTCGAGAACTTGATGAGAC CGACTTCGATATGCTTCTTGATTACTGGCTCATGCTCTCTTTTTTTGCGA AGCTGAAGTTAAAAAAAGAGTAAGGACACAAAACACGTATGCAAAATCTG AAACAACGAAAAACAGTTGCCTCCGTAAGTTACTCTGGTTCTCTGTTCCC CTCTTGGTGAACAAAAAACTGCGCAGTGTATCATGGACCAGAGACACTTG CGAGACCTCGTGACTTCGAGCAACGGCATCGCTTTCATCGCAGACGGAGC AATCCTGCCTCGAATTGGAGGGGCAGAAAACGTGCCAATGAAGGTATCGC AAGGGGCTATACCTTTTCAGAGTCCTCCCTCCCTACGACACGAGTTCACC CTCCCTCATCGTGGCATCATTTCGGGCATGTTGCTGCCACGGGGTGTCAC TATCATTGTGGGTGGCGGGTATCACGGTGAGAAAATGCGTCGGGCCTGCT AGACGTCATTGTACATGGCCTCGTCGATTTTTGGCTGTGTGATTCTTGAC TGTATTGTCCACTTGGTCAGCTCGCGCGCCTCACTGAAGAAAAAAACATC GCTTTGCAATTTCTTCGTCGGCCTTATGAATTTCTTAGCCAGCGGTGAAC TGTGAACCCAAGCACAGCTTGTGAACTTTAAGATTACCTCTCCCTCGTGG CACATGGATATATTGTCGATGTTGGGGCGCGGGGTTCATACTTCCTCCCC GTTTTTCAAACTTGGAACTTGCAACGACTTGTCGATGCCCGCGCTAAAAA TCAAGCTAGATGGCCTCAAGCTGCGCCGGCGCTTCCCCCGAAATTTTTCA TTTTTTTTGCAGGAAAATCGACGTTGCTACGAGCTCTAGCAGTCGGCGTC TACGACAAGGCCCCCGGCGACGGACGCGAGTTTGCCGTCACGGATCCCAA TGCGGTAACAGTTCGCGCGGAGGATGGACGCTCGGTCTCGGGCGTCGACA TATCTCCTTTCATCTCGGCGCTTCCGACCAGCGTCGCCCGACCCGCACAA GAGAGTGACGAGGGTGCAGAGAAAGGATCTGGAAGAGTCGGGGCAACAGT GGCGGTGGCCGAGGCAAAAACACCTGCGGCTACCTCGGGGGAGGGGGTCG AGCGAGATTGTAGGTCGACAAAGTGCTTCTCGACTAGGGGCGCTAGTGGC AGCACGTCCCAGGCGGCCAATGTAATGGAGGCACTTGAGGCCGGAGCTAC CGCGCTGCTGCTAGACGAAGATACCTGCGCAGGAAATGTAGGTGTTTTAT GAATGTTGTGCTCCAATGACAGAACAAGACGAGCTCTTCGTGTTGTAGTC TTTTGTCATGGGTCTAATCTTATAACGCTTCTACCTGATCAATCGTGTGG CAATACCTGGTGTCATCGGTGCACAAATGGTAAGCACTGCTTTCTTCCTG TTTGATGCATTCTGTTTGGTCGATCTAGGTGGCAGGTAGATAACCCATAG ACGCTAAAGCTGGGATTCATCCAAGAACAGTTGTACTTTTTATAAGACGC CAACGAATGTCCATTTTGTCGTGTAGAGATGATATGGGAAAGTGCGACTC AATCTTCCCAAGCACCATAAGGGCGCACCAAGAAGCACGACATAAAAACC TGCGCGGTGTAGTAGCTCAACCTAGCCCATCGCCCCATACCTTGACTGTA AAGCAAGTTCTATGTCCTCGCAGATTTCCGCGTAGGTAGATGGCTGACCG CAAATTATCGCTGGCTGGCATAAAAGCGGCGATCGGCGCCCTCGATCTGG ATTGTGGCCGCTCGCAGAAACGCTCAAGTACTTCAGGATCAGTACTCAAG TCCAAGTGAGAATTGGCTCGATGGGCTTTACTTTCACCTTATATTTCAAC GTACCCTCATTTACACCTGAGTAAACTCTAGCTTCATGATCCAGGCCGAC AGTAGTGGTCACTATCTCAGCTTCAGCCAGGGCAACTAGATGGTCAGCTG CCGTTGCGGAAAGCTAGAGAAACGCGGAATTTTTATTTACAGCCGAGTTA TGAAACGATGTGAAGAGTCGAGCTACTGCGCCGCGTAGATTTGTCAGTCT CATGTTTCTATGGTATATGCTCGTGTCGTTTGAGCAGATAGATTTGCATT TTAGTATATCATCTCTACGTGAAACTGACTAGGGAAAGCAACCTCGACAC TGACAGCCCGGTTTATCGAGTCACAGGCATTGCCATTTTCCATAACTACC CGGTGTAAAGCGTCTGTCTTTTTCGCAGGAAGACCCCGCCGAGTGTTTCA ACGTTTTTGTGTTCTAAGAGCGTCTCCTCGTAAGAAACTGTGTCATTGTT TTTCTCATCTCCTGTAAAGAGAGCTCGGACGGACCAAATCTACTTAGGCA ACCAGCGTGAGCGGCGCCATAGAGCAAGTTTTTGATATTTAGTTGTTCGT GCGTGAAGATTCAATGTATTTTTGTTTAGAGAAGACGAAGAGTATTGAGT ATTTCTGCAAAGTGTCCCTGTTGCCAGGTTGGAATAACCAGAGATTTCCG TATCTTCAAGTCGTACCTGCGCGACATCGATGAACACAATTTCCACTTCT TGGGTATATTAAAAAGTGAAATGGTTTCGTTGTTCTATACGTTATTTGTT AATTGTGATGCATTTGGTCTTTTCTTGGTTTACACTGTGCACATAAATAG ACTGACGGCAAATGAGCCAAACGACTCCTTCCAATATACGAAATACGGTC TTCATATTACCTAGTAACATCACCCAGGAATTAAGGCTAATGGTGCTGCT GCTACTGCTTCTGCTGTGATGCCCCGTCGGCGTCTTCTTATTCTCTTGCG CTCCCTCCTGTTCTCTTAAATGTCGCAATCTCCCCCCCTGGCAGTTTATG ATCAGGGATAGCCGCATGAGAGCAATGGTTAGCCACGAGCCTATCACGCC GGTGAGTGCCAGAAACTCTTCAAGTTATGCACGCGTATCAGGATCTCACG GGTCCTGTTTTTCTTTCGTGTTGAATCTGGGGGAGGGTTAACGACTACTT GTGGAGAATGACTTCGACTAGCCGAATATGTTGCATTTTAGCCGTGACAA CGACCACTACTGTGTAAAGTAGATCGTGGTATGTGGATTTCTCCGTCACA CAATAGCGCAGGGTTTCTGGCATCGAAGCTACTTCCCGCGAAAATTACTG GTTTATCCCACGAGGCTACAGTAATAATCCTTCGTCTGGCTGCCATTTAG TACTTTATTTGGACTCACGCCTACGAGAATGCAGTATCTTGGATGCGCTC CTCTTACACCGTTAGCCCCAGTTCGCACACAAGACCATGTTGGCGACGTG GTTGGTAGTCGCTGACACCGCGATATCCTTCTACTAAACACCCAATTATT ATTTCTGTCAAACGATGTGACCCTGTGCCGTCCGCTGGAGTTCATTTATC GCGTAAGCAACCTCTGGCTAGAGCTCGGAGTGTCGTCGGTGATTGTGGTC GGCGGATGTGGAGATTACTTTGACGTGCACGACACGGCAATCCTCGTGGA TAACTACATCGCCATGGATGCCACGGAGCGTGCGCACAGCGTAAGTACCT CTGTTTCTCTACGTATTGTCGTGGAACTGTGGTAATCATGAGCAACTTCA CTCTTTCGGACATCAAATTTGTGATGTCCTCTTCCAATTCGACACCAATT CCCGTGAAATCAGGAGATGTAAATAATAACTTACGCTGGTGTATGTTGGT CGCACGCTAAATATCAACATCGACGTCTTCGTTAGGTATCCCCCAAAGTA GTTACTCTCACGTACACCTTTCGTGACGGTGTCTGAGCGATGTGCAGTGC CCACTGAAGAGCAATCGACGGAAGAACTGAGGACCTTCGGTAAAGGTCTT TTTGTAGTGCTGAGGCAGTGGTCGATTGAGCAAATGTAATGCTGCAGCCC AAGTGATACCTGGATACCTTTGAAACGCGACACCAGCAGCTGCAATTCGT CTGGACTCCAAAAGGATAGCACATGTTATATTTCCCAGGGTTGAATACTG GCAGCACCTACCAGTATATCGATATCGACTAAACAGCGCGGAGCGCAAGG CAAGTACTTCAGCGCGAGCCCAAGGTCCCCCCGGCTTGTACGGGATTCTC GCCGGAGGGATACAAAGGACGCATTTTGTCTTCATCTCTCTGCCAAATTG AGTGCAAAAACTTGCTAGCGTGACAGCGAGAAACAGTCGATATATAGAAA ATGAAATAAAACAATTGTGACAATGAGGCTAACTGTCCTCAACAGACGTT GGGTGATTGTCACCCGTTTTAAGGTGTTTCCTAAGGTGGCCACTACATGA TGAATATTTTACAGTCTCTGGTTCCGGCCAAACAGGTTTGACCGGTCAAT CCTTGCATAGTGCAGGAGTTATGTTGCTCATTGAGGCAGGTGTATTATGT ACATAAGTGAAACATCAAAATACTGCTATCTCGAAGATTTCTCATCCAGC ATCAGTATACTGCCGGCGTCCGTATAACTTGGAAATTCGCGTGTCAGTGC CCAATTCTAATACATCCCATACACCACACGTTCCATTCCTGCACCCGATG CCCCCTTGCTCCCCCACGCCTCTCTTATCCGTCTCACCGATCGTCTGTAG ATTTCTCGCCGGTTTTGTGTGGGTCGAGTCCAGTTCGCGGGAAGGGGGCT CGTCCACCGCTTGCAATGGCCAGGAAATCTGTCACCCCGCACGGTAGTCC CGGAATCCGTCTTCGCAACAAGGAAAAAATCCGCAAAGCGAAGGGCGTGG GCTGCTTGTGTGAATGAATACTCTAGGAGCGTGCCCAAACGCGGCTGCGG AGACGTCAACGCAACGAATATGACTAACGGCACTGAAAGCGCTGAGGATA CGGTAGTAGCTAAGCAGCAGCAGGATACTTCGGTTGTTGTCGCCACGGTT AACGTGAACGGGGCTGGCGGTGCGGTTGGAATGGGTTCTGCATGGCCGGA GTGTGTTGACGAGGATAGCCAAGTAGAGGAGGTAGACCATGAGGAGGAAC CGGTTGGAGGGGGCATATCCCGATTGTGCTCATGTACTTGTTATTGTGGT GCAGCTGGTTCTCTCGCCGGCGACGACGGTAATACGGTTCGAGTGGGGAA TGCTTCGGCAGATGTCTCGCGCGTCGAGCAGATCGTGGGAGGGGCGGCGC AGACCCGCGGTTGCGCGCTCGGTGTGGAGTGGGTGCTGCGCGCGACGCAG AGATCTCCCGGTCTTACCGTCGGTAGGGCGTTGGATGCGTTGGACGCTGC TCTGCGAAAGGGGGAAGGGAGTGGGTTGGCTCCATTGCTTGAGTTGACAA ATAATTTAGAGAGACGCGGTGCGGGTGGTGATGATGTGTCATCGTACGGT CCAGTTGCGAAGCCGAGAAGGTTTGAAGTCGCGGCGGCCTTGAACAGGCT TGCCGGGGTGCGGTTCGCGTGTGCAGCGAGTGTTGGTGTGCCCGCTGCTG TTGGGTCGTCCGTAGCTGATGGGGTCGACGCGCTCGAGGAGAAGGGGTAG CTCTTGACGCGAGTGTTCGGTGGTTTAGTTGGTGGTGTGGTGAGCATACT GCGTTTTGCATTCCGCTATCTGAAGTTTTAAACTAAACTAAATCAAACAC TGTAGCGCGGTTTTATTTGTCTCGACCCATAAAATAGTTCCTGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig1431:17939..24632+

>mRNA_H-paniculata_contig1431.2603.1 ID=mRNA_H-paniculata_contig1431.2603.1|Name=mRNA_H-paniculata_contig1431.2603.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4890bp|location=Sequence derived from alignment at H-paniculata_contig1431:17939..24632+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGAAGCTGGAAACGCCAGGGCAACACGCAAAAGACACCTTTGTCTT
GCAAGAAAAACAAGCTGTGACAACAAGCGCACGGAGCGTGGACGCTAGTG
AAAAACCAGAGCGCCGAGCGTGGGCACCAGCTGTCGGGGATACGTGGGAC
CTGCACCTCGATAGCCAAGCGGAGACGGCAGTACGTATCTCCCTGCTTTC
CATTCCATCTCCAAGACACCCAACAAGACCATGCAGACTCGAAGCAGTAG
TACCGCTCTCGGCAACGGCGCTGCCGTCGTCGCTTCTTGAGTCTGGCGGA
GGTCGAGTGCGCGTGGCCCTCTCGGACTTCATCGCTCGACGGTTTCAGGT
CACCATCGCCGGGTCCCCGATGGCCCGCTCTTTTGGTATCCGGTCCGGCC
CGATTGGTCCTTTTTGTCTTGAAACCAACTGGGTTCGGGTTAGCTCGGGT
GCAGGCGGCTGTGGGTGCAGTATTACGGTTGTTCTGGACGTTACTGGTGC
TCCCGCGAGCCCCTGGGGATTTCTTCAAGATGCATCTGGAGTTAAGGGTG
GGAGTGATGGCGGAGTGTTGGCGGGTGTTTTAGGAGTGGTGAAGAAAGCT
CTGTTGGGCTGCGATCAGCGGGGAGGGGGACTGAACGCTAACCAAGCTCG
ATCGCACGTCAAGATGTCGAAGCTGGAAACGCCAGGGCAACACGCAAAAG
ACACCTTTGTCTTGCAAGAAAAACAAGCTGTGACAACAAGCGCACGGAGC
GTGGACGCTAGTGAAAAACCAGAGCGCCGAGCGTGGGCACCAGCTGTCGG
GGATACGTGGGACCTGCACCTCGATAGCCAAGCGGAGACGGCAGTACGTA
TCTCCCTGCTTTCCATTCCATCTCCAAGACACCCAACAAGACCATGCAGA
CTCGAAGCAGTAGTACCGCTCTCGGCAACGGCGCTGCCGTCGTCGCTTCT
TGAGTCTGGCGGAGGTCGAGTGCGCGTGGCCCTCTCGGACTTCATCGCTC
GACGGTTTCAGGTCACCATCGCCGGGTCCCCGATGGCCCGCTCTTTTGGT
ATCCGGTCCGGCCCGATTGGTCCTTTTTGTCTTGAAACCAACTGGGTTCG
GGTTAGCTCGGGTGCAGGCGGCTGTGGGTGCAGTATTACGGTTGTTCTGG
ACGTTACTGGTGCTCCCGCGAGCCCCTGGGGATTTCTTCAAGATGCATCT
GGAGTTAAGGGTGGGAGTGATGGCGGAGTGTTGGCGGGTGTTTTAGGAGT
GGTGAAGAAAGCTCTGTTGGGCTGCGATCAGCGGGGAGGGGGACTGAACG
CTAACCAAGCTCGATCGCACGTCAAGTGTATCATGGACCAGAGACACTTG
CGAGACCTCGTGACTTCGAGCAACGGCATCGCTTTCATCGCAGACGGAGC
AATCCTGCCTCGAATTGGAGGGGCAGAAAACGTGCCAATGAAGGTATCGC
AAGGGGCTATACCTTTTCAGAGTCCTCCCTCCCTACGACACGAGTTCACC
CTCCCTCATCGTGGCATCATTTCGGGCATGTTGCTGCCACGGGGTGTCAC
TATCATTGTGGGTGGCGGGTATCACGTGTATCATGGACCAGAGACACTTG
CGAGACCTCGTGACTTCGAGCAACGGCATCGCTTTCATCGCAGACGGAGC
AATCCTGCCTCGAATTGGAGGGGCAGAAAACGTGCCAATGAAGGTATCGC
AAGGGGCTATACCTTTTCAGAGTCCTCCCTCCCTACGACACGAGTTCACC
CTCCCTCATCGTGGCATCATTTCGGGCATGTTGCTGCCACGGGGTGTCAC
TATCATTGTGGGTGGCGGGTATCACGGAAAATCGACGTTGCTACGAGCTC
TAGCAGTCGGCGTCTACGACAAGGCCCCCGGCGACGGACGCGAGTTTGCC
GTCACGGATCCCAATGCGGTAACAGTTCGCGCGGAGGATGGACGCTCGGT
CTCGGGCGTCGACATATCTCCTTTCATCTCGGCGCTTCCGACCAGCGTCG
CCCGACCCGCACAAGAGAGTGACGAGGGTGCAGAGAAAGGATCTGGAAGA
GTCGGGGCAACAGTGGCGGTGGCCGAGGCAAAAACACCTGCGGCTACCTC
GGGGGAGGGGGTCGAGCGAGATTGTAGGTCGACAAAGTGCTTCTCGACTA
GGGGCGCTAGTGGCAGCACGTCCCAGGCGGCCAATGTAATGGAGGCACTT
GAGGCCGGAGCTACCGCGCTGCTGCTAGACGAAGATACCTGCGCAGGAAA
TGAAAATCGACGTTGCTACGAGCTCTAGCAGTCGGCGTCTACGACAAGGC
CCCCGGCGACGGACGCGAGTTTGCCGTCACGGATCCCAATGCGGTAACAG
TTCGCGCGGAGGATGGACGCTCGGTCTCGGGCGTCGACATATCTCCTTTC
ATCTCGGCGCTTCCGACCAGCGTCGCCCGACCCGCACAAGAGAGTGACGA
GGGTGCAGAGAAAGGATCTGGAAGAGTCGGGGCAACAGTGGCGGTGGCCG
AGGCAAAAACACCTGCGGCTACCTCGGGGGAGGGGGTCGAGCGAGATTGT
AGGTCGACAAAGTGCTTCTCGACTAGGGGCGCTAGTGGCAGCACGTCCCA
GGCGGCCAATGTAATGGAGGCACTTGAGGCCGGAGCTACCGCGCTGCTGC
TAGACGAAGATACCTGCGCAGGAAATTTTATGATCAGGGATAGCCGCATG
AGAGCAATGGTTAGCCACGAGCCTATCACGCCGTTTATGATCAGGGATAG
CCGCATGAGAGCAATGGTTAGCCACGAGCCTATCACGCCGTTCATTTATC
GCGTAAGCAACCTCTGGCTAGAGCTCGGAGTGTCGTCGGTGATTGTGGTC
GGCGGATGTGGAGATTACTTTGACGTGCACGACACGGCAATCCTCGTGGA
TAACTACATCGCCATGGATGCCACGGAGCGTGCGCACAGCTTCATTTATC
GCGTAAGCAACCTCTGGCTAGAGCTCGGAGTGTCGTCGGTGATTGTGGTC
GGCGGATGTGGAGATTACTTTGACGTGCACGACACGGCAATCCTCGTGGA
TAACTACATCGCCATGGATGCCACGGAGCGTGCGCACAGCATTTCTCGCC
GGTTTTGTGTGGGTCGAGTCCAGTTCGCGGGAAGGGGGCTCGTCCACCGC
TTGCAATGGCCAGGAAATCTGTCACCCCGCACGGTAGTCCCGGAATCCGT
CTTCGCAACAAGGAAAAAATCCGCAAAGCGAAGGGCGTGGGCTGCTTGTG
TGAATGAATACTCTAGGAGCGTGCCCAAACGCGGCTGCGGAGACGTCAAC
GCAACGAATATGACTAACGGCACTGAAAGCGCTGAGGATACGGTAGTAGC
TAAGCAGCAGCAGGATACTTCGGTTGTTGTCGCCACGGTTAACGTGAACG
GGGCTGGCGGTGCGGTTGGAATGGGTTCTGCATGGCCGGAGTGTGTTGAC
GAGGATAGCCAAGTAGAGGAGGTAGACCATGAGGAGGAACCGGTTGGAGG
GGGCATATCCCGATTGTGCTCATGTACTTGTTATTGTGGTGCAGCTGGTT
CTCTCGCCGGCGACGACGGTAATACGGTTCGAGTGGGGAATGCTTCGGCA
GATGTCTCGCGCGTCGAGCAGATCGTGGGAGGGGCGGCGCAGACCCGCGG
TTGCGCGCTCGGTGTGGAGTGGGTGCTGCGCGCGACGCAGAGATCTCCCG
GTCTTACCGTCGGTAGGGCGTTGGATGCGTTGGACGCTGCTCTGCGAAAG
GGGGAAGGGAGTGGGTTGGCTCCATTGCTTGAGTTGACAAATAATTTAGA
GAGACGCGGTGCGGGTGGTGATGATGTGTCATCGTACGGTCCAGTTGCGA
AGCCGAGAAGGTTTGAAGTCGCGGCGGCCTTGAACAGGCTTGCCGGGGTG
CGGTTCGCGTGTGCAGCGAGTGTTGGTGTGCCCGCTGCTGTTGGGTCGTC
CGTAGCTGATGGGGTCGACGCGCTCGAGGAGAAGGGGTAGATTTCTCGCC
GGTTTTGTGTGGGTCGAGTCCAGTTCGCGGGAAGGGGGCTCGTCCACCGC
TTGCAATGGCCAGGAAATCTGTCACCCCGCACGGTAGTCCCGGAATCCGT
CTTCGCAACAAGGAAAAAATCCGCAAAGCGAAGGGCGTGGGCTGCTTGTG
TGAATGAATACTCTAGGAGCGTGCCCAAACGCGGCTGCGGAGACGTCAAC
GCAACGAATATGACTAACGGCACTGAAAGCGCTGAGGATACGGTAGTAGC
TAAGCAGCAGCAGGATACTTCGGTTGTTGTCGCCACGGTTAACGTGAACG
GGGCTGGCGGTGCGGTTGGAATGGGTTCTGCATGGCCGGAGTGTGTTGAC
GAGGATAGCCAAGTAGAGGAGGTAGACCATGAGGAGGAACCGGTTGGAGG
GGGCATATCCCGATTGTGCTCATGTACTTGTTATTGTGGTGCAGCTGGTT
CTCTCGCCGGCGACGACGGTAATACGGTTCGAGTGGGGAATGCTTCGGCA
GATGTCTCGCGCGTCGAGCAGATCGTGGGAGGGGCGGCGCAGACCCGCGG
TTGCGCGCTCGGTGTGGAGTGGGTGCTGCGCGCGACGCAGAGATCTCCCG
GTCTTACCGTCGGTAGGGCGTTGGATGCGTTGGACGCTGCTCTGCGAAAG
GGGGAAGGGAGTGGGTTGGCTCCATTGCTTGAGTTGACAAATAATTTAGA
GAGACGCGGTGCGGGTGGTGATGATGTGTCATCGTACGGTCCAGTTGCGA
AGCCGAGAAGGTTTGAAGTCGCGGCGGCCTTGAACAGGCTTGCCGGGGTG
CGGTTCGCGTGTGCAGCGAGTGTTGGTGTGCCCGCTGCTGTTGGGTCGTC
CGTAGCTGATGGGGTCGACGCGCTCGAGGAGAAGGGGTAG
back to top