mRNA_H-paniculata_contig1431.2602.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1431.2602.1
Unique NamemRNA_H-paniculata_contig1431.2602.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig1431.2602.1 vs. uniprot
Match: A0A6H5L1A0_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1A0_9PHAE)

HSP 1 Score: 340 bits (873), Expect = 1.720e-101
Identity = 181/324 (55.86%), Postives = 232/324 (71.60%), Query Frame = 1 
Query: 1126 MAVRVTTDIAPDQTVPVCIEPVIVKSEPIHHNPNHKYIWRQIVVARTVSNWVPNSTHGTAVIQVANPSNRGVTIPVNTVLGPIAPVTVVPPSVVSTLATTAEDKTTLR---DELAGVLKNIFARTTYDKEQCSQILDLCAKHRSVFSLSPVELGTCTLAKAEFPLEPGTKPVDKPVYRANPRTQQVIDHCVDKMEEQRIVEQRPSPCGSPVTFVIRSDGRPRFCVDYRATIRKHLIRETWPVPDVAVHIYTVGGTQLISVFDLEAAYHQIPVAEPDVEKMAFVTHKGKYVFKRMPFGVANAPWLF*RIMTLTFANFQQRSDLLV 2088
            MAV V T  AP    P  +EP IV ++ I  + N    +R IVVARTV NW  ++   +A +QVANPS R V I  +T+LG I+PV  V    VS + +   D+TT R   DEL   +K  F  TT    QCSQ+LDLCAK+R+VFSLSP ELG CT+AKA+FPLEPGTKPVD+  YR NPR Q+VID CV++ME++ I+EQRPS  GS VT V ++DG PRFCVDYR+TI K LI+++WP+PD+  HI TVGG + I+V D+++AYHQI V E + EK AFVTHKGK+VFKR+PFG+ANAP+LF R+M+L F++F  RS L+V
Sbjct:    1 MAVDVVTQHAPQANTPALVEPRIVTAQDIETSENIPEAFRTIVVARTVCNW--SAKDKSAAVQVANPSKRHVHIARDTILGYISPVKSVADKTVSAVNS---DQTTFRHKRDELKRAMKKAFTSTTLTPHQCSQVLDLCAKYRNVFSLSPKELGKCTIAKADFPLEPGTKPVDRAPYRTNPRAQEVIDKCVEQMEDEEIIEQRPSSWGSAVTIVAKADGTPRFCVDYRSTINKSLIQKSWPMPDIESHIDTVGGAKFITVCDIQSAYHQIEVDEAEQEKTAFVTHKGKWVFKRLPFGIANAPFLFARMMSLAFSHFGPRSGLVV 319
[Close]
BLAST of mRNA_H-paniculata_contig1431.2602.1 vs. uniprot
Match: A0A6H5KKE6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKE6_9PHAE)

HSP 1 Score: 343 bits (880), Expect = 6.060e-98
Identity = 182/324 (56.17%), Postives = 233/324 (71.91%), Query Frame = 1 
Query: 1126 MAVRVTTDIAPDQTVPVCIEPVIVKSEPIHHNPNHKYIWRQIVVARTVSNWVPNSTHGTAVIQVANPSNRGVTIPVNTVLGPIAPVTVVPPSVVSTLATTAEDKTTLR---DELAGVLKNIFARTTYDKEQCSQILDLCAKHRSVFSLSPVELGTCTLAKAEFPLEPGTKPVDKPVYRANPRTQQVIDHCVDKMEEQRIVEQRPSPCGSPVTFVIRSDGRPRFCVDYRATIRKHLIRETWPVPDVAVHIYTVGGTQLISVFDLEAAYHQIPVAEPDVEKMAFVTHKGKYVFKRMPFGVANAPWLF*RIMTLTFANFQQRSDLLV 2088
            MAV V T  AP    P  +EP IV ++ I  + N    +R IVVARTV NW  ++   +A +QVANPS R V I  +T+LG I+PV  V    VS + +   D+TT R   DEL   +K  F  TT+  +QCSQ+LDLCAK+R+VFSLSP ELG C +AKA+FPLEPGTKPVD+  YR NPR Q+VID CV++ME++ I+EQRPS  GS VT V ++DG PRFCVDYR+TI K LIR++WP+PD+  HI TVGG + I+V D+++AYHQI V E + EK AFVTHKGK+VFKR+PFG+ANAP+LF R+M+L F++F  RS LLV
Sbjct:    1 MAVDVVTKHAPQANTPALVEPRIVTAQDIETSENIPEAFRTIVVARTVCNW--SAKDKSAAVQVANPSKRHVHIARDTILGYISPVKSVADKTVSAVNS---DQTTFRHKRDELKRAMKKAFTNTTFTPQQCSQVLDLCAKYRNVFSLSPKELGKCRIAKADFPLEPGTKPVDRAPYRTNPRAQEVIDKCVEQMEDEEIIEQRPSSWGSAVTIVAKADGTPRFCVDYRSTINKSLIRKSWPMPDIESHIDTVGGAKFITVCDIQSAYHQIEVDEAEQEKTAFVTHKGKWVFKRLPFGIANAPFLFARMMSLAFSHFGPRSGLLV 319
[Close]
BLAST of mRNA_H-paniculata_contig1431.2602.1 vs. uniprot
Match: A0A6H5JGV3_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGV3_9PHAE)

HSP 1 Score: 260 bits (665), Expect = 5.810e-71
Identity = 147/320 (45.94%), Postives = 200/320 (62.50%), Query Frame = 1 
Query: 1144 TDIAPDQTVPVCIEPVIVKSEPIHHNPNHKYIWRQIVVARTVSNWVPNSTHGTAVIQVANPSNRGVTIPVNTVLGPIAPVTVVPP------SVVSTLATTAEDKTTLRDELAGVLKNIFARTTYDKEQCSQILDLCAKHRSVFSLSPVELGTCTLAKAEFPLEPGTKPVDKPVYRANPRTQQVIDHCVDKMEEQRIVEQRPSPCGSPVTFVIRSDGRPRFCVDYRATIRKHLIRETWPVPDVAVHIYTVGGTQLISVFDLEAAYHQIPVAEPDVEKMAFVTHKGKYVFKRMPFGVANAPWLF*RIMTLTFANFQQRSDLL 2085
            TD  P +   V +EP IV  + + H+      ++ IVVART++ W  +++ G+ V+Q+ANPS  GV +     LG ++ VT+  P      SV +T  T  E +   + EL   L   F  TT   EQ   +LDLCAK+R VFSLS  ELG CT+A+A FP+ PGT+PVD+P YR NPR   V D CV +M E  I+E+RPS  GSP T V + +G PRFCVDYR T+ +H++R+TWP+P++   +  VG    I+V D+ +A+ QIPVAE  V++ AFVT  GKY FKRMPFGVANAPWLF  +M+L   +    S +L
Sbjct:   10 TDCRPPEDCTVVVEPRIVSEQDLVHDETLSP-FQNIVVARTLATW--HASDGSVVVQIANPSADGVRLYDGLCLGQLSTVTITEPDQLHVNSVANTPVTDDEIRHA-KSELEEPLSKAFDNTTLTNEQQQAVLDLCAKYRPVFSLSMSELGRCTIAEATFPVPPGTRPVDRPPYRPNPRVATVSDKCVAEMLEWGIIEKRPSAWGSPCTLVAKKNGSPRFCVDYRHTLNRHIVRKTWPMPNLESCLDAVGQALYITVADILSAFWQIPVAEEHVDRTAFVTPTGKYCFKRMPFGVANAPWLFQHVMSLALGHLGPDSGVL 325
[Close]
BLAST of mRNA_H-paniculata_contig1431.2602.1 vs. uniprot
Match: A0A6H5K112_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K112_9PHAE)

HSP 1 Score: 260 bits (665), Expect = 4.920e-67
Identity = 147/320 (45.94%), Postives = 200/320 (62.50%), Query Frame = 1 
Query: 1144 TDIAPDQTVPVCIEPVIVKSEPIHHNPNHKYIWRQIVVARTVSNWVPNSTHGTAVIQVANPSNRGVTIPVNTVLGPIAPVTVVPP------SVVSTLATTAEDKTTLRDELAGVLKNIFARTTYDKEQCSQILDLCAKHRSVFSLSPVELGTCTLAKAEFPLEPGTKPVDKPVYRANPRTQQVIDHCVDKMEEQRIVEQRPSPCGSPVTFVIRSDGRPRFCVDYRATIRKHLIRETWPVPDVAVHIYTVGGTQLISVFDLEAAYHQIPVAEPDVEKMAFVTHKGKYVFKRMPFGVANAPWLF*RIMTLTFANFQQRSDLL 2085
            TD  P +   V +EP IV  + + H+      ++ IVVART++ W  +++ G+ V+Q+ANPS  GV +     LG ++ VT+  P      SV +T  T  E +   + EL   L   F  TT   EQ   +LDLCAK+R VFSLS  ELG CT+A+A FP+ PGT+PVD+P YR NPR   V D CV +M E  I+E+RPS  GSP T V + +G PRFCVDYR T+ +H++R+TWP+P++   +  VG    I+V D+ +A+ QIPVAE  V++ AFVT  GKY FKRMPFGVANAPWLF  +M+L   +    S +L
Sbjct:   10 TDCRPPEDCTVVVEPRIVSEQDLVHDETLSP-FQNIVVARTLATW--HASDGSVVVQIANPSADGVRLYDGLCLGQLSTVTITEPDQLHVNSVANTPVTDDEIRHA-KSELEEPLSKAFDNTTLTNEQQQAVLDLCAKYRPVFSLSMSELGRCTIAEATFPVPPGTRPVDRPPYRPNPRVATVSDKCVAEMLEWGIIEKRPSAWGSPCTLVAKKNGSPRFCVDYRHTLNRHIVRKTWPMPNLESCLDAVGQALYITVADILSAFWQIPVAEEHVDRTAFVTPTGKYCFKRMPFGVANAPWLFQHVMSLALGHLGPDSGVL 325
[Close]
BLAST of mRNA_H-paniculata_contig1431.2602.1 vs. uniprot
Match: A0A6H5KCT5_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCT5_9PHAE)

HSP 1 Score: 229 bits (583), Expect = 5.640e-62
Identity = 110/203 (54.19%), Postives = 145/203 (71.43%), Query Frame = 1 
Query: 1423 TAEDKTTLRDELAGVLKNIFARTTYDKEQCSQILDLCAKHRSVFSLSPVELGTCTLAKAEFPLEPGTKPVDKPVYRANPRTQQVIDHCVDKMEEQRIVEQRPSPCGSPVTFVIRSDGRPRFCVDYRATIRKHLIRETWPVPDVAVHIYTVGGTQLISVFDLEAAYHQIPVAEPDVEKMAFVTHKGKYVFKRMPFGVANAPWLF 2031
            TA +    + EL   L   FA +T+ KEQ ++ILDLCAK+R VFSL+  ELG CT A+A FP+ P TKPV++  YRANP T+ VI  CV  M +  I+E+ PS  GSPVT V R DG+PRFCVD+R+T+ KHLIR+TWP+ ++  ++ +VG  + ISV D+++AY QIPV    VE+ AFVT+ GKY +KRMPFGV NAPW+F
Sbjct:   18 TASEIAAAKAELVEPLSKAFANSTFTKEQQTRILDLCAKYRPVFSLNRKELGKCTTAQATFPMPPNTKPVNRRPYRANPHTEAVIQTCVKDMLDDDIIEELPSQWGSPVTLVARKDGKPRFCVDFRSTVNKHLIRKTWPLANMESNLDSVGSAKFISVADVQSAYWQIPVHPDHVERTAFVTNSGKYCYKRMPFGVCNAPWIF 220
[Close]
BLAST of mRNA_H-paniculata_contig1431.2602.1 vs. uniprot
Match: A0A6H5K0N6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0N6_9PHAE)

HSP 1 Score: 226 bits (575), Expect = 7.860e-61
Identity = 108/203 (53.20%), Postives = 144/203 (70.94%), Query Frame = 1 
Query: 1423 TAEDKTTLRDELAGVLKNIFARTTYDKEQCSQILDLCAKHRSVFSLSPVELGTCTLAKAEFPLEPGTKPVDKPVYRANPRTQQVIDHCVDKMEEQRIVEQRPSPCGSPVTFVIRSDGRPRFCVDYRATIRKHLIRETWPVPDVAVHIYTVGGTQLISVFDLEAAYHQIPVAEPDVEKMAFVTHKGKYVFKRMPFGVANAPWLF 2031
            TA +    + EL   L   FA +T+ KEQ ++ILDLCAK+R VFSL+  ELG CT A+A  P+ P TKPV+   YRANP T+ VI  CV  M +  I+++ P   GSPVTFV R+DG+PRFCVD+R+T+ KHLIR+TWP+ ++  ++ +VG  + ISV D+++AY QIPV    VE+ AFVT+ GKY +KRMPFGV NAPW+F
Sbjct:  217 TASEIAAAKAELVEPLSKAFANSTFTKEQQTRILDLCAKYRPVFSLNRKELGKCTTAQARLPMPPNTKPVNHRPYRANPHTEAVIQTCVKDMLDDDIIDELPGQWGSPVTFVARNDGKPRFCVDFRSTVNKHLIRKTWPLANMESNLDSVGSAKFISVADVQSAYWQIPVHPDHVERTAFVTNSGKYCYKRMPFGVCNAPWIF 419
[Close]
BLAST of mRNA_H-paniculata_contig1431.2602.1 vs. uniprot
Match: A0A6H5K153_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K153_9PHAE)

HSP 1 Score: 224 bits (570), Expect = 6.490e-58
Identity = 109/203 (53.69%), Postives = 143/203 (70.44%), Query Frame = 1 
Query: 1423 TAEDKTTLRDELAGVLKNIFARTTYDKEQCSQILDLCAKHRSVFSLSPVELGTCTLAKAEFPLEPGTKPVDKPVYRANPRTQQVIDHCVDKMEEQRIVEQRPSPCGSPVTFVIRSDGRPRFCVDYRATIRKHLIRETWPVPDVAVHIYTVGGTQLISVFDLEAAYHQIPVAEPDVEKMAFVTHKGKYVFKRMPFGVANAPWLF 2031
            TA +    + EL   L   FA  T+ KEQ ++ILDL AK+R VFSL+  ELG CT A+A FP+ P TKPV++  YRANP T+ VI  CV  M +  I+E+ PS  GSPVT V R DG+PRFCVD+R+T+ KHLIR+TWP+ ++  ++ +VG  + ISV D+++AY QIPV    VE+ AFVT+ GKY +KRMPFGV NAPW+F
Sbjct:   41 TASEIAAAKAELGKPLSKAFANFTFTKEQQTRILDLSAKYRPVFSLNRKELGKCTTAQATFPMPPNTKPVNRRPYRANPHTEAVIQTCVKDMLDDDIIEELPSQWGSPVTLVARKDGKPRFCVDFRSTVNKHLIRKTWPLANMESNLDSVGSAKFISVADVQSAYWQIPVHPDHVERTAFVTNSGKYCYKRMPFGVCNAPWIF 243
[Close]
BLAST of mRNA_H-paniculata_contig1431.2602.1 vs. uniprot
Match: A0A6H5JXY7_9PHAE (RT_RNaseH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXY7_9PHAE)

HSP 1 Score: 226 bits (576), Expect = 1.020e-57
Identity = 129/291 (44.33%), Postives = 179/291 (61.51%), Query Frame = 1 
Query: 1144 TDIAPDQTVPVCIEPVIVKSEPIHHNPNHKYIWRQIVVARTVSNWVPNSTHGTAVIQVANPSNRGVTIPVNTVLGPIAPVTVVPP------SVVSTLATTAEDKTTLRDELAGVLKNIFARTTYDKEQCSQILDLCAKHRSVFSLSPVELGTCTLAKAEFPLEPGTKPVDKPVYRANPRTQQVIDHCVDKMEEQRIVEQRPSPCGSPVTFVIRSDGRPRFCVDYRATIRKHLIRETWPVPDVAVHIYTVGGTQLISVFDLEAAYHQIPVAEPDVEKMAFVTHKGKYVFKRM 1998
            TD  P +   V +EP IV  + + H+      ++ IVVART++ W  +++ G+ V+Q+ANPS  GV +     LG ++ VT+  P      SV +T  T  E +   + EL   L   F  TT   EQ   +LDLCAK+R VFSLS  ELG CT+A+A FP+ PGT+PVD+P YR NPR   V D CV +M E  I+E+R S  G P T V + +G PRFCVDYR T+ +H++R+TWP+P++   +  VG    I+V D+ +A+ QIPVAE  V++ AFVT  GKY FKR+
Sbjct:   10 TDCRPPEDCTVVVEPRIVAEQDLVHDETLISPFQNIVVARTLATW--HASDGSVVVQIANPSADGVRLYDGLCLGQLSTVTITEPDQLHVNSVANTPVTDDEIRHA-KSELEEPLSKAFDNTTLTNEQQQAVLDLCAKYRPVFSLSMSELGRCTIAEATFPVPPGTRPVDRPPYRPNPRVATVSDKCVAEMLEWGIIEKRTSAWGRPCTLVAKKNGSPRFCVDYRHTLNRHIVRKTWPMPNLESCLDAVGQALYITVADILSAFWQIPVAEEHVDRTAFVTPTGKYCFKRL 297
[Close]
BLAST of mRNA_H-paniculata_contig1431.2602.1 vs. uniprot
Match: A0A6H5K3U6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3U6_9PHAE)

HSP 1 Score: 205 bits (522), Expect = 6.210e-52
Identity = 96/172 (55.81%), Postives = 126/172 (73.26%), Query Frame = 1 
Query: 1570 ELGTCTLAKAEFPLEPGTKPVDKPVYRANPRTQQVIDHCVDKMEEQRIVEQRPSPCGSPVTFVIRSDGRPRFCVDYRATIRKHLIRETWPVPDVAVHIYTVGGTQLISVFDLEAAYHQIPVAEPDVEKMAFVTHKGKYVFKRMPFGVANAPWLF*RIMTLTFANFQQRSDLL 2085
            ELG CT+A+A FP+ PGT+PVD+P YR NPRT  VID CV+ M E  I+E+RPSP GSP T V +S+G PRFCVDYR T+ +++IR+TWP+P++   +  VG    I+V D+ +A+ QIPVAE  V++ AFVTH GKY FKRMPFGVANAPWLF  +M++   +    S +L
Sbjct:    3 ELGRCTIAEATFPVPPGTRPVDRPPYRPNPRTSAVIDKCVEDMLEWGIIEKRPSPWGSPCTIVAKSNGSPRFCVDYRHTLNRNIIRKTWPMPNLESCLDAVGDALYITVADILSAFWQIPVAEEHVDRTAFVTHNGKYCFKRMPFGVANAPWLFQHVMSIALGHLGPDSGVL 174
[Close]
BLAST of mRNA_H-paniculata_contig1431.2602.1 vs. uniprot
Match: A0A6H5JHS5_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHS5_9PHAE)

HSP 1 Score: 197 bits (502), Expect = 2.580e-51
Identity = 93/172 (54.07%), Postives = 124/172 (72.09%), Query Frame = 1 
Query: 1570 ELGTCTLAKAEFPLEPGTKPVDKPVYRANPRTQQVIDHCVDKMEEQRIVEQRPSPCGSPVTFVIRSDGRPRFCVDYRATIRKHLIRETWPVPDVAVHIYTVGGTQLISVFDLEAAYHQIPVAEPDVEKMAFVTHKGKYVFKRMPFGVANAPWLF*RIMTLTFANFQQRSDLL 2085
            ELG CT+A+A FP+ PG +PVD+P YR NPRT  VID CV  M E  I+E+RPSP GSP T V +S+G PRFC+DYR T+ +++IR+T P+P++   +  VG    I+V D+ +A+ QIPVAE  V+++AFVTH GKY FKRMPFGVANAPWLF  +M++   +    S +L
Sbjct:    3 ELGRCTIAEAAFPVPPGARPVDRPPYRPNPRTSAVIDKCVGDMLEWGIIEKRPSPWGSPCTIVAKSNGSPRFCIDYRHTLNRNIIRKTCPMPNLESCLDAVGDALYITVADILSAFWQIPVAEEHVDRIAFVTHNGKYCFKRMPFGVANAPWLFQHVMSIALGHLGPDSGVL 174
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1431.2602.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L1A0_9PHAE1.720e-10155.86Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KKE6_9PHAE6.060e-9856.17Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JGV3_9PHAE5.810e-7145.94Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K112_9PHAE4.920e-6745.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCT5_9PHAE5.640e-6254.19Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K0N6_9PHAE7.860e-6153.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K153_9PHAE6.490e-5853.69Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JXY7_9PHAE1.020e-5744.33RT_RNaseH domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K3U6_9PHAE6.210e-5255.81Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JHS5_9PHAE2.580e-5154.07Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1431contigH-paniculata_contig1431:2..6341 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score116.7
Seed ortholog evalue2.3e-23
Seed eggNOG ortholog7070.TC007543-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.zinc finger
EggNOG OGs38F42@33154,3BA5H@33208,3CWAK@33213,3SQDU@50557,41WI3@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Exons4
Model size5386
Cds size1125
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1431.2602.1prot_H-paniculata_contig1431.2602.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1431 911..2035 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929138.899703-UTR-H-paniculata_contig1431:1..9101622929138.899703-UTR-H-paniculata_contig1431:1..910Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1431 2..910 +
1691480746.297761-UTR-H-paniculata_contig1431:1..9101691480746.297761-UTR-H-paniculata_contig1431:1..910Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1431 2..910 +
1622929138.926727-UTR-H-paniculata_contig1431:2035..33361622929138.926727-UTR-H-paniculata_contig1431:2035..3336Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1431 2036..3336 +
1691480746.3283384-UTR-H-paniculata_contig1431:2035..33361691480746.3283384-UTR-H-paniculata_contig1431:2035..3336Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1431 2036..3336 +
1622929138.9475057-UTR-H-paniculata_contig1431:3782..40081622929138.9475057-UTR-H-paniculata_contig1431:3782..4008Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1431 3783..4008 +
1691480746.342876-UTR-H-paniculata_contig1431:3782..40081691480746.342876-UTR-H-paniculata_contig1431:3782..4008Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1431 3783..4008 +
1622929138.964273-UTR-H-paniculata_contig1431:4239..43931622929138.964273-UTR-H-paniculata_contig1431:4239..4393Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1431 4240..4393 +
1691480746.351903-UTR-H-paniculata_contig1431:4239..43931691480746.351903-UTR-H-paniculata_contig1431:4239..4393Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1431 4240..4393 +
1622929138.9770272-UTR-H-paniculata_contig1431:4670..63411622929138.9770272-UTR-H-paniculata_contig1431:4670..6341Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1431 4671..6341 +
1691480746.3603392-UTR-H-paniculata_contig1431:4670..63411691480746.3603392-UTR-H-paniculata_contig1431:4670..6341Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1431 4671..6341 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929138.9152265-CDS-H-paniculata_contig1431:910..20351622929138.9152265-CDS-H-paniculata_contig1431:910..2035Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1431 911..2035 +
1691480746.316076-CDS-H-paniculata_contig1431:910..20351691480746.316076-CDS-H-paniculata_contig1431:910..2035Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1431 911..2035 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1431.2602.1

>prot_H-paniculata_contig1431.2602.1 ID=prot_H-paniculata_contig1431.2602.1|Name=mRNA_H-paniculata_contig1431.2602.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=375bp
MGAFRAKLDWDKQIMSFGGSKVTIPAIHRKPTNRISNMHTSSAYCSAVAQ
RSDAASVPVYLPRKCNISAGHEMAVRVTTDIAPDQTVPVCIEPVIVKSEP
IHHNPNHKYIWRQIVVARTVSNWVPNSTHGTAVIQVANPSNRGVTIPVNT
VLGPIAPVTVVPPSVVSTLATTAEDKTTLRDELAGVLKNIFARTTYDKEQ
CSQILDLCAKHRSVFSLSPVELGTCTLAKAEFPLEPGTKPVDKPVYRANP
RTQQVIDHCVDKMEEQRIVEQRPSPCGSPVTFVIRSDGRPRFCVDYRATI
RKHLIRETWPVPDVAVHIYTVGGTQLISVFDLEAAYHQIPVAEPDVEKMA
FVTHKGKYVFKRMPFGVANAPWLF*
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mRNA from alignment at H-paniculata_contig1431:2..6341+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1431.2602.1 ID=mRNA_H-paniculata_contig1431.2602.1|Name=mRNA_H-paniculata_contig1431.2602.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6340bp|location=Sequence derived from alignment at H-paniculata_contig1431:2..6341+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACCGTGTTGACAGTTCAGCCACCTGCGCATGATTGCGGAGAATTGACGAC
ATTTGCAGCTAGTACTCCCAGCGATTGGCGGGAACTCGCGCTAAGGCGGC
AGCGTGGGCGACTCAATTGCGTGAAAGCGGCTGGTGAGATCGTTGGGTAG
AAGGGTGGCATGCAACCTCGTGCCAGAGGTATCTATTGTCCTGCAAAGTC
GGCTTGATTCACGAAGATATATCAAACAGTCGATCATAACGAGTTACACC
CAATTTTCAGAGCCCTCCATGGAGGCCTCTGCTGCTTTATCCGCTACCTT
GCCCGACAGACTGGAACGGCATGCTCTCATCATGATCAATGCACCTAGAC
CCATTGGACCCTCGTGTACCTCAGTGACGGGCCGTTATTCAAATCTCGAA
GAGAGCAAACCAAACGTCGACTGTCTATCTTACAGTGGGCAGGGCGGAGC
CGGCAGAAACACTGTTGTTTCCTTGTTATGGGTGCAAATATTCACGGAAA
AAAACATCACGCAGCGACACATACCCTCGCACCTCAGTGTCTGTATACGA
GTACTATAAGATAATGTAAGCACCAGTCTACTTTCCAGGCGCAGACAATT
AGTAAAGAAGAATTTAGCGATGTTCACAAAATGTCTCGCGCGCTATCCTG
TCGCACTGAAAGCTTCAAATGTTTCGGTTAATTTTTCTTAGCAGAGAGTG
CGAATCCCAGCCATCATAAACGGTGAAAAGGTACTCCGCTCTGCAGAAAT
TCATCCTGTACAAGCAGGGGCCATAAAATTGCGGTCTGGCGACGGATCTG
CGCTTTAAATTCCCGGATATATTCGTTTCACCCTTGAACTTATGGAAACC
ACATTGCCCGTTGAGTGCCTAATTCACGCCCAGATAAGTTGTTGCGGGAC
AACAGTATCATGGGAGCATTTCGAGCGAAGTTGGACTGGGATAAACAGAT
TATGTCTTTTGGTGGTAGCAAGGTCACTATTCCTGCGATTCATCGAAAAC
CAACGAATCGGATATCTAACATGCACACGTCATCCGCGTACTGTTCAGCA
GTAGCACAGCGTTCAGACGCCGCATCCGTACCAGTGTATCTGCCAAGAAA
ATGCAATATTTCCGCAGGACACGAGATGGCTGTCCGCGTCACGACAGACA
TTGCCCCGGATCAGACAGTACCTGTATGCATTGAACCAGTGATAGTAAAA
TCAGAACCGATTCACCACAACCCAAACCATAAATACATTTGGAGACAGAT
AGTAGTTGCTCGGACGGTTAGCAATTGGGTGCCAAACAGTACACACGGTA
CTGCCGTAATTCAAGTCGCTAATCCGTCTAACAGGGGCGTTACAATTCCG
GTCAACACTGTTCTAGGCCCCATTGCACCTGTGACCGTCGTTCCTCCGTC
AGTCGTCAGCACACTAGCAACTACCGCAGAGGATAAGACTACTTTACGTG
ACGAATTAGCCGGTGTGCTCAAGAACATTTTTGCTAGGACCACATATGAC
AAGGAACAATGCTCGCAAATTCTGGACCTGTGTGCCAAGCATCGATCAGT
ATTTTCCCTTTCGCCTGTTGAATTAGGGACGTGTACCCTGGCGAAAGCCG
AATTTCCTCTGGAACCAGGCACCAAACCAGTAGACAAGCCAGTATACCGT
GCAAATCCCCGAACCCAACAGGTAATCGATCATTGTGTCGACAAAATGGA
AGAACAGAGGATTGTCGAACAACGCCCTAGCCCTTGCGGCTCACCCGTCA
CCTTTGTAATTCGAAGTGACGGTCGGCCGCGTTTTTGCGTCGATTATCGC
GCGACGATAAGAAAGCATCTTATCCGTGAAACGTGGCCTGTGCCTGATGT
CGCGGTACATATTTATACTGTAGGAGGTACACAGCTTATCTCCGTGTTCG
ATTTGGAAGCCGCCTATCACCAGATACCAGTAGCAGAACCAGATGTCGAA
AAAATGGCCTTTGTCACTCATAAAGGTAAATACGTCTTCAAGCGCATGCC
ATTTGGCGTTGCGAACGCACCATGGTTATTCTAAAGGATCATGACTTTGA
CGTTTGCCAATTTCCAACAGCGCAGCGACCTGCTCGTATAATCTTGACGA
TCAAAGGCACATAATGAAAAGTGACCGCGGGTAAGATAATCCCAAATTTG
CTCGCAACTAGCCACGGGTAAGAGGTTTGGCCGCTCTCCCACGCAACGCC
TTTCTTCGTCGCGAAATCAACGGCACTCATCACAGGCGGTTCAACATGGA
TGCCTGAAAACGTATCGGTGCGGAAGGCTTACAGTTGTAAGCAAACAGTC
GATGATACAATGGATCACGTTTACTGACAAGGACTCCGCCTCGAACGGTC
CGTGCAATCACTCTGGTCAAACCGCTCAGAGAGACCCCAAGACTGATAAT
ATGACGAGGAACTTCGTCATCTTGGGAAAGGCCGCACGGGTGGCGGCAAA
CAACGTATTTAAGGTAAAGCCTGCGCATTCAGGGGGCTTAGTTTATTAGT
GTCTAAGTATATGATCTGGCTAATAATCTACTTTAGACCCTCGTTGTTGA
CATTCCTCTCTGTACCCTGTATTCTGACTTCTGGTGTGTGTCTCCCCTGG
ATGGATGCATGTGTCGGTCGCTTTTCGTGGAAACCGCACACACCAATTGA
ACAAAGTGAAATACTGCTGCCCGACTGACTTGTTATAATTTTGAGTGTGT
GAAATGTATCTGAAGTATTGCTCTTTCTGCTGTATTAGCACTGCTGTTGT
ACGGCTACCACATAGTAATACCAACCACAACTCTCCCACAGATACTCTAG
CGGGGTACAAAATGGGCGTTTCATATGCAACATTACTACATCGAGCATTT
CTCATGACAACTACTCGACTTTTGGGAATCTTGTATTAACTGACGCGTTA
CCGAGGGTCGAGACACCATGATGATCATGACTGTATGACGTTCGGCGGCG
CCCGCTTCCTCTCTCAAACTTGGTCGAAAACACACTGAGCTGCCACTGCC
ACCCGGATCGTCTGCGTGGACGCTTGGTACCTCAAGGGGTAATACGGAGG
CGTCATCCTCGCCATGGCCGCTATAGACAGCGGCAACAAGCTCGTCCCGG
TCGCCTTTGCGACTATCTCGAAGGAGAACGCCGACGGCTACGCGTTCCTC
TTCCGTGAGGAAAAGAAGAACACGGAGGTGGTGACGTTCCTGGACAACCC
GGCTACCACGATCTTCGCAGACGATCACAGGGGGTCGCCCGGCGCCATGC
GCGCCGAGGTGCCGCTAGCGCGCTAGCGCAGTTCCGCGCGTGCACAAAGC
ACCTTATCGGCAACCTCAAGCGCGGCGTTGGACCGGTGAGGGGTTTCAAC
AAGGATTTGATGCTGCATAGTCGGTATCCAATGCTTTTCGCATACCAGGT
AGATGAGTTTTTATGCAACGAGACACTGTTTTGCATATACCAATCCTTTT
CATGAAAGTTGCATCTGGCGTTTACAGTAGTACTGCATGCGGCAACAGTA
GTGAAGCAGCAGTACAAAAGTACTGCTGCAGCTTTCTCAGCTCTTTGCGT
GTGTGTTTCATTGTAGTCTTGCAACCATGCTCCGTTGTGAGCCTCGATGA
AAATGGAATGAGGTGAGTCTGTGGGGTATTATTACAGTGCCGTTTCGGAA
ATCATTTTTACGGTATCATCATGATAGATACAAGCCACCCCAAAAGTGGT
GTCGAGCTGACCCCACCATCCTGTGCCCCCCTCTTCCTGATCGCGCCGTC
TATATGATCACGTTTGTCGGCAAAATTGCAGATGGTTACACAGGACCTCT
TCGAAATATCGAAGTCTCCCGCAGAGTCGACCTTCCTCCACACCATGAAC
TCGGGGGAGGCAGTCGTTCGCGCCAGAAGCGTTCCAGTACCTCATGGGCT
AGGAGCGCCGGCACTGGACGCACCACGCTTCCTCTGAGGAAACGAGGATT
AGGGACCAGTCCACGACCAACCTCATCGAGAGCGGCATGCAACGGCTCAC
GGCAGAGGTCAGTACAACTTCTTCCACCTCAATTTCTTTTACGGTTTTGA
AGCAGTGTTCGGGAAGCCTTTTTCTTCTCTTTGATCCAAAGGGGGGGCAA
AAAACACTCCAGCCAACCCAAAACCTCTGTATTTACTCGTGAAACGTTCG
ACTACCAACGGTGGGAGCGGACCTCAACATTTTCTGTCTGTGCTAACACC
GGCTTCTGCCGTCGCCTTCGTCGCCTGCCCTTTGCCAGACGAGGGCCTTG
GTTCCCCCCTCATGGCTATCGAGCTGGTTGAAAGGTCCGCCAAAATGTTC
GCGGAGCGGGCGAAGCATTTCAATGGCTTTCCCCGAATCCACACGCAGTT
CGGTGCAAAGCACTTTGACAACGAGAGGATCAGGTCGCAGAGGTGAGTTC
CTTTTTGCGTTTGTGTTGCGGATTGGGTCGATACAGTCATTTCTGTGCCT
ACACGAGCTCGAATGCTGATCCCTCCCGTGGAATTCAGTCACATTGTCGT
TCTCACCCATCTGTGTTTACGTAGTCCCCGTACTTAAACCGTGATTCGTT
GATTCGGCGCCGAGATGGTTGGCAAAATATGCACGTGGGTGTCCGCATCT
CTGAACCTCAAGTCACTTTGGTCCCTTTTCTTTGACCCTTTTTACACATC
CGACACTGACACATGATAGGGTTCACAGAATCCCGTGGGGGAATGGCGTG
TGCCTGGCCAAGGTGCACCTTCCGAGCGGATGGAGCGCGAACCGCGTGAA
GCTGTAGTTCGCATCCGCCAGGCAGGCGGCCAGCATCACCTGCACGTGCC
GCTACTCGACGAGATTCGCAATGCTCTGCCGACATGGCTTTGCCGTCCTG
CGGAGTAAGTTGTGTAGTTTCTTGCACTTTGGCGTTGACCAAAAGAGTAA
TGATCAGCTTGGACTCTCTGCAGGGCATCAAGCGCCTGTGCATGGTCCGG
AATATTTTTAGCTCTGCCTTTCGACTACGTCAATTTTAGCATTTGGAAGG
CAGTGTCATGTCACCTTTCGTGCTTCTACCTCTACTTGGCATGATTTGTT
AGTTTCTTGATTTCTCTATATTGTCGAGCGAGTCTGTACGGCTATTGTGA
GGATGACTCCAAACATGTTGAGCCAGTTCACTGCATTTATTCTGGTCCAA
CCCACGATCTATTTACCGGTCGTATACTCCGTTTCCTTTCGAAACATTTC
AGTGGAGGGGAAGCTTGAGAAGGCGATGACCCTCATCGACGACGGGTACC
GCGCGGACACTTACCGTGCTCTCTACTCCGGCAAGGACTACTGTAGTGCC
GCCGACCCCTTCTATGCTAGCCACGGACGTCAGCCTCCCGCCGCCGGCTC
CTGTGGAGGGGCAGGCCGGCCGATCCAAGAAGGGACCGCTCGTCTAGGTT
CAGCCAGCCTATTGCGGAACTGACTGGGACGGCCAAGGGGGCCGCGGCCT
CGGGCAGCCTGTCACAGGGCAGCCTACCGCAGGGCGGCCTGCCGCTAAGT
GCACGCCGTGATGTGGGCAATGCCCAGTCACACCAGTGACTGACAGTAGA
GTGCAAGTTGGTGCTATTCTCTTCGAGTGTCTAGTGATTCTTGGAGTGAA
AAAGAAGATCAACTACATACAGTAGTAGTGAGAGGCAATATCCAGCATTA
TTTTCGGGGGGGTGCCGGTAGGACGGTATCGCGGAAACATACGATGCAGT
GAAATGTTTCTCGTGTTTCTTGCAGTGACAAGTATCAAGGTAATCCATTT
TGGGAGGCAGTCGTATTACAATGGTATTGAGCGGCAATGCCCAGCGACGT
TCTTGGGTGGGTGATAATGGGGCACTATCGCGGAATTAACTGTAACGAGA
GCCTATCCTATTTCATTATTTTATCAAATTTGTAGACAACCGAACAATCG
GACGACACAAATGCGAGCCTCATGGCAATTAATTAGTGAAACATAACGAT
TCATATCTTACTGTGGAATGGATAACGGCACCATACTGGCGGTTCTGTAC
ACTCGAGCAACAAGGTTCCTTAGTGTGCAGTTTTTGGCAGATATCATTTC
GCCAAAGTAAACGCTGTTGTGTGTCAAGTGCTTCTTGCCATTGGCGGGCC
AGGTTCACATGACTAAGAAGAGTTGTTGGAGTCAGTTCTCAAAATTCTAC
TACTTTCCCCAGGCTTTGCCCCGGTAGGCAACGGAAATACATGTTATTAG
ACGCCTCACGTTTTTCGACGCATATATGTATGCTCTTATCTCGTTTCCCG
CATTATGCAACAAAAAAACGCTGATATAGGCGGGATATGCGCCGCAAAGC
CGATCTAGCGCCGCAAGATCGAAATATGCTGAAGTATGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig1431:2..6341+

>mRNA_H-paniculata_contig1431.2602.1 ID=mRNA_H-paniculata_contig1431.2602.1|Name=mRNA_H-paniculata_contig1431.2602.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2250bp|location=Sequence derived from alignment at H-paniculata_contig1431:2..6341+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGAGCATTTCGAGCGAAGTTGGACTGGGATAAACAGATTATGTCTTT
TGGTGGTAGCAAGGTCACTATTCCTGCGATTCATCGAAAACCAACGAATC
GGATATCTAACATGCACACGTCATCCGCGTACTGTTCAGCAGTAGCACAG
CGTTCAGACGCCGCATCCGTACCAGTGTATCTGCCAAGAAAATGCAATAT
TTCCGCAGGACACGAGATGGCTGTCCGCGTCACGACAGACATTGCCCCGG
ATCAGACAGTACCTGTATGCATTGAACCAGTGATAGTAAAATCAGAACCG
ATTCACCACAACCCAAACCATAAATACATTTGGAGACAGATAGTAGTTGC
TCGGACGGTTAGCAATTGGGTGCCAAACAGTACACACGGTACTGCCGTAA
TTCAAGTCGCTAATCCGTCTAACAGGGGCGTTACAATTCCGGTCAACACT
GTTCTAGGCCCCATTGCACCTGTGACCGTCGTTCCTCCGTCAGTCGTCAG
CACACTAGCAACTACCGCAGAGGATAAGACTACTTTACGTGACGAATTAG
CCGGTGTGCTCAAGAACATTTTTGCTAGGACCACATATGACAAGGAACAA
TGCTCGCAAATTCTGGACCTGTGTGCCAAGCATCGATCAGTATTTTCCCT
TTCGCCTGTTGAATTAGGGACGTGTACCCTGGCGAAAGCCGAATTTCCTC
TGGAACCAGGCACCAAACCAGTAGACAAGCCAGTATACCGTGCAAATCCC
CGAACCCAACAGGTAATCGATCATTGTGTCGACAAAATGGAAGAACAGAG
GATTGTCGAACAACGCCCTAGCCCTTGCGGCTCACCCGTCACCTTTGTAA
TTCGAAGTGACGGTCGGCCGCGTTTTTGCGTCGATTATCGCGCGACGATA
AGAAAGCATCTTATCCGTGAAACGTGGCCTGTGCCTGATGTCGCGGTACA
TATTTATACTGTAGGAGGTACACAGCTTATCTCCGTGTTCGATTTGGAAG
CCGCCTATCACCAGATACCAGTAGCAGAACCAGATGTCGAAAAAATGGCC
TTTGTCACTCATAAAGGTAAATACGTCTTCAAGCGCATGCCATTTGGCGT
TGCGAACGCACCATGGTTATTCTAAATGGGAGCATTTCGAGCGAAGTTGG
ACTGGGATAAACAGATTATGTCTTTTGGTGGTAGCAAGGTCACTATTCCT
GCGATTCATCGAAAACCAACGAATCGGATATCTAACATGCACACGTCATC
CGCGTACTGTTCAGCAGTAGCACAGCGTTCAGACGCCGCATCCGTACCAG
TGTATCTGCCAAGAAAATGCAATATTTCCGCAGGACACGAGATGGCTGTC
CGCGTCACGACAGACATTGCCCCGGATCAGACAGTACCTGTATGCATTGA
ACCAGTGATAGTAAAATCAGAACCGATTCACCACAACCCAAACCATAAAT
ACATTTGGAGACAGATAGTAGTTGCTCGGACGGTTAGCAATTGGGTGCCA
AACAGTACACACGGTACTGCCGTAATTCAAGTCGCTAATCCGTCTAACAG
GGGCGTTACAATTCCGGTCAACACTGTTCTAGGCCCCATTGCACCTGTGA
CCGTCGTTCCTCCGTCAGTCGTCAGCACACTAGCAACTACCGCAGAGGAT
AAGACTACTTTACGTGACGAATTAGCCGGTGTGCTCAAGAACATTTTTGC
TAGGACCACATATGACAAGGAACAATGCTCGCAAATTCTGGACCTGTGTG
CCAAGCATCGATCAGTATTTTCCCTTTCGCCTGTTGAATTAGGGACGTGT
ACCCTGGCGAAAGCCGAATTTCCTCTGGAACCAGGCACCAAACCAGTAGA
CAAGCCAGTATACCGTGCAAATCCCCGAACCCAACAGGTAATCGATCATT
GTGTCGACAAAATGGAAGAACAGAGGATTGTCGAACAACGCCCTAGCCCT
TGCGGCTCACCCGTCACCTTTGTAATTCGAAGTGACGGTCGGCCGCGTTT
TTGCGTCGATTATCGCGCGACGATAAGAAAGCATCTTATCCGTGAAACGT
GGCCTGTGCCTGATGTCGCGGTACATATTTATACTGTAGGAGGTACACAG
CTTATCTCCGTGTTCGATTTGGAAGCCGCCTATCACCAGATACCAGTAGC
AGAACCAGATGTCGAAAAAATGGCCTTTGTCACTCATAAAGGTAAATACG
TCTTCAAGCGCATGCCATTTGGCGTTGCGAACGCACCATGGTTATTCTAA
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