mRNA_H-paniculata_contig14309.2601.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14309.2601.1
Unique NamemRNA_H-paniculata_contig14309.2601.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig14309.2601.1 vs. uniprot
Match: D7FIY0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIY0_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 2.140e-25
Identity = 61/148 (41.22%), Postives = 86/148 (58.11%), Query Frame = 1 
Query:   10 EAVEIGQRRAAKPPPPFSAYARAAVEYSAASGSLQNLIETSLAPKAGDELLPES----DGANVDV--------NQGWDWGPQSSIADDWLHQQDIKVDTYIEVP-SEHERTRVCRMWYKEHGVVPGFDWGTLPEADQKKWKAYACDWV 414
            EA EIG+RR+ +PPPP S +A++ V  +   G LQ+L+E ++  + G   L E     DG  + V        NQGWDWG +SSI DD+L   ++ +   +++  +E  R   C+ W+KEHGV PG DWGTLP   Q+ W  Y CD V
Sbjct:  104 EASEIGERRSRQPPPPMSEFAKSRVSKAVDGGRLQDLVEAAVGSETG--FLSEEEITMDGLPLGVLSRQGNGGNQGWDWGSRSSIMDDFLGGNEVDIIEPVKLDVTEEVRGNSCKKWFKEHGVTPGVDWGTLPAPQQQLWSWYRCDDV 249
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14309.2601.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FIY0_ECTSI2.140e-2541.22Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14309contigH-paniculata_contig14309:153..3398 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-07_007730.1
Exons3
Model size1194
Cds size585
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14309.2601.1prot_H-paniculata_contig14309.2601.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14309 762..3398 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929138.7755694-UTR-H-paniculata_contig14309:152..7611622929138.7755694-UTR-H-paniculata_contig14309:152..761Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14309 153..761 -
1691480746.2527895-UTR-H-paniculata_contig14309:152..7611691480746.2527895-UTR-H-paniculata_contig14309:152..761Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14309 153..761 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929138.795803-CDS-H-paniculata_contig14309:761..10551622929138.795803-CDS-H-paniculata_contig14309:761..1055Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14309 762..1055 -
1691480746.26611-CDS-H-paniculata_contig14309:761..10551691480746.26611-CDS-H-paniculata_contig14309:761..1055Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14309 762..1055 -
1622929138.8209949-CDS-H-paniculata_contig14309:2290..23721622929138.8209949-CDS-H-paniculata_contig14309:2290..2372Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14309 2291..2372 -
1691480746.274932-CDS-H-paniculata_contig14309:2290..23721691480746.274932-CDS-H-paniculata_contig14309:2290..2372Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14309 2291..2372 -
1622929138.8529117-CDS-H-paniculata_contig14309:3189..33981622929138.8529117-CDS-H-paniculata_contig14309:3189..3398Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14309 3190..3398 -
1691480746.2847342-CDS-H-paniculata_contig14309:3189..33981691480746.2847342-CDS-H-paniculata_contig14309:3189..3398Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14309 3190..3398 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14309.2601.1

>prot_H-paniculata_contig14309.2601.1 ID=prot_H-paniculata_contig14309.2601.1|Name=mRNA_H-paniculata_contig14309.2601.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=195bp
MKQEAVEIGQRRAAKPPPPFSAYARAAVEYSAASGSLQNLIETSLAPKAG
DELLPESDGANVDVNQGWDWGPQSSIADDWLHQQDIKVDTYIEVPSEHER
TRVCRMWYKEHGVVPGFDWGTLPEADQKKWKAYACDWVSNSEEADPQEVS
KAAGERKEKNSPPTGQKRVEGAEQWEESGEVDGGQRLAEQNTGR*
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mRNA from alignment at H-paniculata_contig14309:153..3398-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14309.2601.1 ID=mRNA_H-paniculata_contig14309.2601.1|Name=mRNA_H-paniculata_contig14309.2601.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3246bp|location=Sequence derived from alignment at H-paniculata_contig14309:153..3398- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAACAGGAAGCAGTGGAGATCGGACAGCGCCGCGCCGCGAAACCACC
ACCGCCGTTCTCCGCCTACGCTCGGGCGGCCGTCGAGTACTCGGCGGCGT
CAGGGTCTCTTCAAAATTTAATCGAGACTTCGCTGGCGCCCAAGGCGGGT
GATGAGCTATTGCCAGAGAGCGATGGCGCCAATGTCGATGTCAATCAGGG
ATGGGACTGGTAAGCAGCGCTGTACTATACATGCGGGGAGAGCCGATTCA
TGGGAGAGGGGGGGGAAGGGTGGCCGGATCCCCTCGGAATAGCAGCCCTG
AGAATTTTTGCCATTGCGCCGACGAAAGCATCGGGCGATTTCTGTTTTTG
GGAATGTTTGATACGTGCGTGCGTGGGCGCATGCTTTTCATCTTTTTGCT
GCGGTGGGTCGGGCGCTGCTGCTGTGTATGATGCGCCCAGGATTAAGCAT
GCTTGGGGATTTGTCGCAAAATTGCGCAAAAAGAAAATCTATCTCGCCAA
TCAACAATCGTGCAGTTCATAATTTAGTGGCACACCGAGTACATCCGTAT
ACATCTTTTCCCCTCTGCTCATGTGAGTCTATGTGGGCGTGTGTGTTTTA
TACACGCTGGCGGTGTCTTTTCTTTGACGTCGCCGCGATGAGTGGAGGCG
TTACGTTTTGTGGGTATTTTTCTGGTGTATTCAAAGGCCTATGGCGCCCT
TGAACACCTTGGCATGTTTACTATTTGGTCGTTACGAGGAACAATCCTGG
CGTTGGGGTCCCTTTTGTACTACATTACTGTATATTTACATCCAAGAGGC
AAGGCCCCCCTTCTCGACGGCAATAAAACGACCGCCTTTTGCACCTGAGA
TACATTTAACCAGCTGTCCGAATAGCACCGGTTAAGCGTTTTCAGTAGAC
GCATGCATTGGTCACTACTCACGACCAGAGCTTAGGAGGTCCATCGTTTT
CGGTCGTAGCGAGGTCAGATTTCGTCGAGGGTTAGTATGCTGGGTGACCG
CGCTATATTCTCTTGCTCGTGGACAGGGGGCCTCAATCGAGCATCGCCGA
CGACTGGTTGCACCAGCAGGATATCAAGGTCGACACGTACATCGAGGTGC
CTAGCGAGGTAGGAAACAAGCCAGACCGTGTTTGCTATGGTTCGATATCT
GGGGTGATAACCAACGTTTTGGTGGCTGCTTGTCTTCGTTGTGCTGTTGG
AACGAAGTGTCGACTGTTACGCCGCATCTACCTCCTCTGCAGGATTGGCA
TGGCCTGTATGGGCGGCAGACCAGACAGTTTTGTGCTATGATTCAATATT
TGGGGCAACCAGGGTTTTGGCGTGCTGCTTCTCTTCGTTGTACAGTATGT
AACTCTCCTGCAGGATCGACACAGCCTGTGTGCGTTTATGTGTGTTCATC
ATTTTATTTTTGATGTGGAAGTATGTGCCTCAGATAGCTTGTCATATGAT
AGTAAAAACTATTTTTGTCCATTTTTTTACCATCACTTGAATATGTTTCT
GACCTTACTCGCCGTTTTTTTTGGATAATTTGTAGCGGATTTATTGATTC
TTTACGACGGCTGCGTGCTCTCCACTTAGTCATTGGACATCAGGTATTTC
GCGTTTCTTCTAATGATCGATATTAACATCACTTGCCAGTCTCCAGGTCT
GATCCGGCGTCTGTTGCGTTGGCATCAATTATATGGTGCTGTATTATGTG
TCGTACGCGCTACGGGGGGTGGGACAATGGCTTTTCGTTTTAGTTCGTGA
CTGGTGGAACGGTATTTTGAAGTCGGGCAAAATACTACACCCACTCTTTT
GGGTGTGGTACCTACTGCGCTCCCCGGCACTTTAAACTTCGAGTTTTGGT
GTTCTAATGTCGCATCCCCAATCGTTTAGATTGCGTCGTATTTTATTTTG
GCGGATATTCGAGCAGCTTCTTCAGTTATTTTACACGTGACTAACTATAT
TTTGCGCTTTTAAAACACATTCAGTTGTGCTCCCAACCAAGATGCAGGTT
TGACGACAAAGATTGCTATCGTTGCGTTAACATTAGTTAAGGAAGTGATG
AGCGCTTCCATCCATCAGGATGACTTTTTGTGATGCACATCGACTGATGA
TCGATTGATTGCTTTTGGCAAAGATCGCTAGCTGTGTCACCGGTATGTGT
TTGTCAGGCTCCTACGCTGGCTTATAAAAAGTCGATATTCACGAAGTGGA
GACGAACGCGCAGGTTTCTGAAGTAGGCTAATAGATTGAAATACTTGGTA
CCAGATTTTTGTCAACAACGCTCTCCTCCAGATTAGATGTTCGCCCTGCA
CACCTCAATGTCGTGAATTGGTGTTTGTTTGCCCGCTACTCAGCATGAAA
GGACCCGGGTGTGTCGAATGTGGTACAAGGAGCACGGCGTCGTGCCGGGA
TTCGATTGGGGCACGTTGCCGGAGGCTGACCAGAAAAAGTGGAAGGCGTA
CGCATGCGACTGGGTTAGCAACTCGGAGGAAGCTGACCCTCAGGAGGTGT
CCAAAGCGGCGGGAGAGCGAAAGGAGAAAAATTCCCCACCGACTGGGCAA
AAAAGGGTAGAGGGCGCCGAGCAGTGGGAGGAGAGTGGGGAAGTGGATGG
GGGGCAGCGGTTGGCGGAACAAAATACTGGCAGATGACCATCTTTGTGTT
TGTTTTCGGGAATGGCTGAATGCAATCCGGGAAGGACGCTCTGGTTGGAT
GGCTCGCTCGTCCCTGCATTCTCTCTCGCTCTGTTTTCCCTGTTTATATA
TGTATATTTTCTCCATTATTTGTTGTTGGTTATTGCGGGTTCTGTGTATT
TTGATGCGGATGGGGGCGCAGAGATTCGGGCTAAAGGTGAGGTAACAAAA
TTGGACTCGCTAACTATAGGGTAGTGTTCTATTCGCTTGCCCTACCCCCT
TCCGTCTCTACCGTCTCTACCGTCTCTACCGTCTCTACTCTCCCAACACC
TTGTTTTGGTAATGTAACACCTTTGTGTGCAAAACGTTTTTTTTTCAGGT
AGGGCATATGTGAGCACGATGTTTTTGTGGCCAGTCAAGCAGTTCAAGTG
TTGCGAAGGTGCGCACGTGGTGTCGTGGTTGGTGTGAACAATGTTTATTT
TTTTATATCTGCGGGGGATCTGTTTCCTGGTGGCAAGTGTAGTGTACAAA
GATATATCTTTGGGTTATACCAGCTAGGACTCTGGTCTACTCTGGGACTT
GTGGCTGTGCTGCGCAGATGGTCATGTTACCTCCGAGGCGTATTCA
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Coding sequence (CDS) from alignment at H-paniculata_contig14309:153..3398-

>mRNA_H-paniculata_contig14309.2601.1 ID=mRNA_H-paniculata_contig14309.2601.1|Name=mRNA_H-paniculata_contig14309.2601.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1170bp|location=Sequence derived from alignment at H-paniculata_contig14309:153..3398- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAACAGGAAGCAGTGGAGATCGGACAGCGCCGCGCCGCGAAACCACC
ACCGCCGTTCTCCGCCTACGCTCGGGCGGCCGTCGAGTACTCGGCGGCGT
CAGGGTCTCTTCAAAATTTAATCGAGACTTCGCTGGCGCCCAAGGCGGGT
GATGAGCTATTGCCAGAGAGCGATGGCGCCAATGTCGATGTCAATCAGGG
ATGGGACTGATGAAACAGGAAGCAGTGGAGATCGGACAGCGCCGCGCCGC
GAAACCACCACCGCCGTTCTCCGCCTACGCTCGGGCGGCCGTCGAGTACT
CGGCGGCGTCAGGGTCTCTTCAAAATTTAATCGAGACTTCGCTGGCGCCC
AAGGCGGGTGATGAGCTATTGCCAGAGAGCGATGGCGCCAATGTCGATGT
CAATCAGGGATGGGACTGGGGGCCTCAATCGAGCATCGCCGACGACTGGT
TGCACCAGCAGGATATCAAGGTCGACACGTACATCGAGGTGCCTAGCGAG
GGGGCCTCAATCGAGCATCGCCGACGACTGGTTGCACCAGCAGGATATCA
AGGTCGACACGTACATCGAGGTGCCTAGCGAGCATGAAAGGACCCGGGTG
TGTCGAATGTGGTACAAGGAGCACGGCGTCGTGCCGGGATTCGATTGGGG
CACGTTGCCGGAGGCTGACCAGAAAAAGTGGAAGGCGTACGCATGCGACT
GGGTTAGCAACTCGGAGGAAGCTGACCCTCAGGAGGTGTCCAAAGCGGCG
GGAGAGCGAAAGGAGAAAAATTCCCCACCGACTGGGCAAAAAAGGGTAGA
GGGCGCCGAGCAGTGGGAGGAGAGTGGGGAAGTGGATGGGGGGCAGCGGT
TGGCGGAACAAAATACTGGCAGATGACATGAAAGGACCCGGGTGTGTCGA
ATGTGGTACAAGGAGCACGGCGTCGTGCCGGGATTCGATTGGGGCACGTT
GCCGGAGGCTGACCAGAAAAAGTGGAAGGCGTACGCATGCGACTGGGTTA
GCAACTCGGAGGAAGCTGACCCTCAGGAGGTGTCCAAAGCGGCGGGAGAG
CGAAAGGAGAAAAATTCCCCACCGACTGGGCAAAAAAGGGTAGAGGGCGC
CGAGCAGTGGGAGGAGAGTGGGGAAGTGGATGGGGGGCAGCGGTTGGCGG
AACAAAATACTGGCAGATGA
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