mRNA_H-paniculata_contig143.2600.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig143.2600.1 vs. uniprot
Match: D7G483_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G483_ECTSI) HSP 1 Score: 1054 bits (2725), Expect = 0.000e+0 Identity = 767/1701 (45.09%), Postives = 982/1701 (57.73%), Query Frame = 1
Query: 1 QIVNVAQGMSIGPALYLWTHRLTNADVVSVVTTTSPFNGAGN-----------GGAPPD--ESSRGIFT-GPPYSGSFGNVDGACE--LTRSIIHNWTILQADR-ATENGLLRAMKGGKAATELRRRREEARLRYPLNLPLYTNPLETGPSATRKEQERVGECLLAERDRFIDLLRRQRREREHLESFACSLIQATYRGYVLRNRWAEVEERLRVRLRIRRNLHRFLRRMGAPFSLGKIEEQQEKEKRHRAAARSIQATFRAFLARQTLGKRRAAAFLLRRXXXXXXXXXXXXXXXXXXXXRYAQVKALAEKRHSSAVMIQTQYRQRLGARVTGHRRRVLRSIAATMIQGQWRRYKMLQVLREIERDRLFGSAAAVQRIIRGYVARKKIGRQLIRVRSLKRTKAAYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTMRKAISLDIWRAAREGNSARVDALYYGQGLGGVIFDSQNRRDAEGNTLLAAVADGTSPLSLVRAILKWGVDINAVNCRGESALQLAMAKRNVEVVDLLMNHPDTQLGQHKAGKSLLHKAAALGLHHLTAQLVARELDVNGVDPENGWSPVHYACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWEKCVSNLLENQASPCSRDSKGQVPAVTAMLRGHKAVAKNLLLAFSRAKIPPRKAHTIGAVASVALAMSSVAADS----ASEPRPSAGVLEVNSLNQAPSADAVGDAI---GGXXXXXXATSEVHQVTVVAIG----STPAEGGMQQG--GLGAEGEPSINGEWQRPELIKRSSSVMSGCGTSRALEAGLAVSREVSSLGCESQKLSPALMGWSHTFLRRFRQVDVDEAVLTELVPDRWDDDDLRCAVSLARRGEVWCLASLFALGLDPLCRHPDTGDTLGIAATIGGHRETLEICLETGVDFAATNNQGRTALYAAAAQADLDLAALLLANPELSRLDADSLCAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEQVGDNGKKGSAVEAIAAVIGXXXXXXXXXXNDSTIEDGYSDTGSSGRGGGEWDGEGDILEDRGGNGTTKTSEGSNTSSDGEYNGLPDTRKHGVRASASPLWAVTSNKHPNET-----PXXXXXXXXXEIPLASPNASIATAEVGVDSAVVDVPTRTPTAGDCKQTPSAKTIAPSLSSTIRTPRPCSTFAAPALSDSED---------ELTRNGWRSDHGTDVQNGEMQAGXXXXXXXXXXHRLYGLR-------------GDEESCEENAAXXXXXXXXXXXXXXXXASEESWASLLNVNIICNKTGRCPLHEAAESGSIKAVLSLLDLGADVLAANAHGDTPLHVAVGPAAPRDPTDEG---GPSLASRDGRTSSTATD------SVASVPDERGRGPCAQARRKLQLSNSESSVRDPSTNVVRALLRRGADPAAKDALGRTAAMGAVLTGRARALRELRVAAVRKRSYPSRLAELRDLAELALVAISEGRVECLRVLTDGCEKEDVLAWENVDRISLLGLAITNGHRECTDLLLTGATPSSSCGSGE-----NTILHVVAVARGGVPVLKRLMSGKGPGAGEGGLFDPAWLELRNGMGDTVLMAALRAGQHAAASVLLQASAVPTAAAHTFRCSWVIARALRATALCPCPSCVFGRTAEERARLCCAVPTRRGRAGE 4890
++VNVAQGMSIGPALYLWTHRLT ADVVSVVTTT P A GG P + RG+ GPP+ GSFG ++G + L R WTIL ++ A+ G A+KGGK ELRR R E LR PL+LPL+T+PLE P+ + K +R+ ECL+AER+RF++LL ++R+ER HLE+FACSL+QA +RGY+LR RWAEV+ R RVRLR+R+ L FL+ GAPF+LG +E+QQ++++ +AAA +IQA+FR FLARQTLGKRR A+FLLRR RY A +R RVTGHRRRV+ SIAA+MIQ QWR L+ ++E+ + RLF SAAA+QRI+RGYVA KK+GRQL RVR L++T+A Y XXXXXXXXX +KA +LDIWRAAREGN++RVDALYYGQGLGGVIFD N +D EGN+LLA VA G P++L+R +LKWG D+N+VN RGESALQLAM++RNVEVVDLL+NHP+ +L Q + GKS+LH+AAALGLHHL+AQLV++ LDVNGVDP+NGW+PV XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX C +NLLEN ASP +++KGQVPAV AML GH + K LL AFS A+ +++ TI A A+VA+A A A + +G + + A GD + G A+++V + VV G +TP + G +G GLGA + + RP G+ +++ G VS S + S +L S + +D++ +L +LVP WDDDD+RCAV+LA RGE WCLASLFALGLDP C+HPD+GDT+GIAA GG RETLE+CLETGV FA N +GR+AL+AA + DL++AALLLANP LS ++ D LC + + +G A + +T D TG SG G G G+ D T++ + S S+ G + IP++ + +A G + + +A TP+ S++R+P P S F AP+L+D+E+ ++T +++ V +AG + G S + XXXX W LL V++ C+ +G CPLHEAA SG + AVLSLLDLGADV AN GDT LHVAVGP APRDP DEG G +LAS T ST + + A+ R +A+ + L + E R P+T VV ALLRRGADP+ K+ LG+TAAM AVL GRA ALRE+R A + S S+ E +L++L +AI EG V CLRVLT+ C +++VLAW + + + L LA+ G REC D+LL G +P++SCG NT+LHV A+ARGGVPVLKRLMS KG G FD WLE RNG+GDTVLMAALRAG+H+AA +LLQA AVPTAAAHTFR +WVIA ALR LCPCPSCV GRTA+ERARLC + + R GE
Sbjct: 51 EVVNVAQGMSIGPALYLWTHRLTGADVVSVVTTTRPSTSASTTTTHKTKYSAGGGLPVGSVDGGRGVLRRGPPFDGSFGRLEGGGKMPLQRRASAKWTILPKNKEASGEGGFMAVKGGKTDAELRRLRNEKNLRAPLHLPLFTSPLEVDPTGSGKVHDRMSECLMAERERFMELLGKERQERVHLEAFACSLVQAAFRGYLLRKRWAEVDARQRVRLRVRKCLRDFLKSRGAPFALGALEKQQKEDRLRQAAACTIQASFRCFLARQTLGKRRLASFLLRRRRAARTLQCWG---------RYL----FASRR----------------LRVTGHRRRVVHSIAASMIQQQWR----LRKIQEVTKSRLFRSAAAIQRIVRGYVAWKKVGRQLTRVRGLRKTRAVYTLQKFIRRAQARQRVXXXXXXXXXGTRARAALHVQRVCRGFVGRRRAAARKKATTLDIWRAAREGNASRVDALYYGQGLGGVIFDCLNTKDPEGNSLLAKVASGVGPIALIRVVLKWGADVNSVNIRGESALQLAMSRRNVEVVDLLVNHPNIRLNQDQPGKSILHEAAALGLHHLSAQLVSKGLDVNGVDPQNGWTPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATNLLENNASPVVKNNKGQVPAVVAMLHGHASTGKKLLQAFSAAETASKRSRTIDAFAAVAMASGVTHAVEPVVDADKDENRSGGRQGSEKPGAGXXXXXGDGLVGLEGITTPEVASADVAEPAVVGEGGSDHNTPDDAGSARGDRGLGAADGGASELQGGRPHSATTVGEKAGSTGSDASVDGGGRGGDAVSVQSNASSRASASLEALSRRASKAGVAMDLNVIMLEDLVPRHWDDDDIRCAVALAERGEAWCLASLFALGLDPDCQHPDSGDTIGIAAARGGDRETLEVCLETGVSFATKNRRGRSALHAAVVRDDLEVAALLLANPGLSGIEVDDLC------------------------DPDEDGRTPLHEMAARGEAPTVLLL---------------ATEADSEWTTGGSG---GAATGSGNASLD------TRSEDAS--SAPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQAGGVGGENGARMGSGSSIPVSGGDTGVADGNTGDGAKRMSDIAAVASAAAAPDTPAT--------SSVRSPLPLSAFVAPSLADTEELRDLRHHHHDVTNAAGKAERPEGVAMDTGRAGSTSTSTNVNSRSSLARKASSSGDTRDTARSGGNHSDDGGDXXXXXGGREVRSEGEEGDDPSGWGGLLEVDVRCSGSGNCPLHEAAASGKVGAVLSLLDLGADVSVANGCGDTALHVAVGPNAPRDPMDEGHSRGSTLASTSLSTLSTTSSPMVVGTTTATTTFSGDRRASGEAQDAMALCDDEG--RGPTTQVVTALLRRGADPSKKNRLGQTAAMCAVLAGRAGALREIRKAVLLGHSS-SKGKEQEELSDLGHMAIREGHVGCLRVLTESCSEQEVLAWTDEEGVPALALAVARGQRECIDILLKGVSPTTSCGGDXXXXXXNTVLHVTAMARGGVPVLKRLMSPKGGGEP----FDLGWLEYRNGLGDTVLMAALRAGRHSAALLLLQALAVPTAAAHTFRYAWVIAAALRLAELCPCPSCVLGRTADERARLCSKIAPKPTRPGE 1653
BLAST of mRNA_H-paniculata_contig143.2600.1 vs. uniprot
Match: A0A6H5KLN4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLN4_9PHAE) HSP 1 Score: 281 bits (718), Expect = 9.000e-77 Identity = 218/559 (39.00%), Postives = 276/559 (49.37%), Query Frame = 1
Query: 3490 STIRTPRPCSTFAAPALSDSED---------ELTRNGWRSDHGTDVQNGEMQAGXXXXXXXXXXH-------RLYGLRGDEESCEENAAXXXXXXXXXXXXXXXXASEES------WASLLNVNIICNKTGRCPLHEAAESGSIKAVLSLLDLGADVLAANAHGDTPLHVAVGPAAPRDPTDEG---GPSLASRDGRTSSTATDSV--------ASVP-DERGRGPCAQARRKLQLSNSESSVRDPSTNVVRALLRRGADPAAKDALGRTAAMGAVLTGRARALRELRVAAVRKRSYPSRLAELRDLAELALVAISEGRVECLRVLTDGCEKE-----------------------------------------------------DVLAWENVDRISLLGLAITNGHRECTDLLLTGATPSSSCGS-----GENTILHVVAVARGGVPVLKRLMSGKGPGAGEGGLFDPAWLELRNGMGDTVLMAALRAGQHAAASVLLQASAVPTAAAHTFRCSWVIARALRATALCPCPSCVFGRTAEERARLCCAVPTRRGRAGE 4890
S++R+P P S FAAP+L+D+E+ ++T +++ V +AG G GD E N + + E W LL VN+ C+ +G CPLHEAA SG + AVLSLLDLGADV AN GDT LHVAVGP APRDP DEG G +LAS T ST + S+ A++ D RG G +A+ + L + E R P+T + GR R+ +A +RK S EL DL +AI EG V CLRVLT+ C ++ +VLAW + + + L LA+ G EC D+LL GA+P++ CG G NT+LHV A+ARGGVPVLKRLMS KG G FD WLE RNG+GDTVLMAALRAG+H+AA +LL+A AVPTAAAHTFR +WVIA ALR + LCPCPSCV GRTA+ERARLC + + R GE
Sbjct: 140 SSVRSPLPLSAFAAPSLADTEELRDLRHHHHDVTNAAGKAERPEGVAIDTGRAGSTSTSTNVSSRISLARKASSSGDTGDTERSGGNHSDYGGGDHDDSSGRKVRSEGEEGDDPSGWGGLLEVNVRCSGSGNCPLHEAAASGKVGAVLSLLDLGADVSVANGCGDTALHVAVGPNAPRDPMDEGHLWGSTLASTSLSTLSTTSSSMIVGTTTATATISGDSRGSG---EAQDAMALCDDEG--RGPTTQARK--------------------------GRLDIYRKATLA-LRKSSKGKEHEELSDLGH---IAIREGHVACLRVLTESCSEQLPVVSGFLFTFCDYSAVLHETCTISFNIATNTXXXXXXXXXXXXXXXXXXNDKEVLAWTDEEGVPALALAVARGQHECIDILLKGASPTTPCGGDGGSGGGNTVLHVTAMARGGVPVLKRLMSPKGGGEP----FDVGWLEYRNGLGDTVLMAALRAGRHSAALLLLKALAVPTAAAHTFRYAWVIAAALRLSELCPCPSCVLGRTADERARLCSKIAPKPTRPGE 659
BLAST of mRNA_H-paniculata_contig143.2600.1 vs. uniprot
Match: A0A6H5KKE4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKE4_9PHAE) HSP 1 Score: 147 bits (370), Expect = 1.330e-34 Identity = 93/244 (38.11%), Postives = 120/244 (49.18%), Query Frame = 1
Query: 1357 EGNSARVDALYYGQGLGGVIFDSQNRRDAEGNTLLAAVADGTSPLSLVRAILKWGVDINAVNCRGESALQLAMAKRNVEVVDLLMNHPDTQLGQHKAGKSLLHKAAALGLHHLTAQLVARELDVNGVDPENGWSPVHYACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWEKCVSNLLENQASPCSRDSKGQVPAVTAMLRGHKAVAKNLLLAFSRAKIPPRKAHTIGAVASVALA 2088
+GN++RVDALYYGQGLGGVIFD N +D EGN+LLA VA G P++L+R +LKWG D+N+VN R +V P H+ L L L +R + V G +P+H A WEKC +NLLEN ASP +++KGQVPAV AML GH + K LL AFS AK +++ TI A A+VA+A
Sbjct: 127 KGNASRVDALYYGQGLGGVIFDCLNTKDPEGNSLLAKVASGVGPIALIRVVLKWGADVNSVNIR-------------TSLVTTDHQSPTIHYDDDDYDDDNDHRCRRDELARL---LTSRSGTMVNVGDAGGVTPIHLAAAGG----------------------------------WEKCATNLLENNASPAVKNNKGQVPAVVAMLHGHASTGKKLLQAFSAAKTASKRSRTIDAFAAVAMA 320
BLAST of mRNA_H-paniculata_contig143.2600.1 vs. uniprot
Match: A0A6H5KJ72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ72_9PHAE) HSP 1 Score: 119 bits (297), Expect = 3.110e-26 Identity = 62/121 (51.24%), Postives = 86/121 (71.07%), Query Frame = 1
Query: 205 GACELTRSIIHNWTILQADR-ATENGLLRAMKGGKAATELRRRREEARLRYPLNLPLYTNPLETGPSATRKEQERVGECLLAERDRFIDLLRRQRREREHLESFACSLIQATYRGYVLRNR 564
G L+R WTIL ++ A+ G A+KGGK +LRR R E LR PL+LPL+T+PLE P+ + K +R+ ECL+AER+RF++LL ++R+ER HLE+FACSL+QA +RGY+LR R
Sbjct: 85 GKTPLSRRASGKWTILPKNKEASGEGGFMAVKGGKTDAKLRRLRNEKNLRAPLHLPLFTSPLEVDPTGSGKVHDRMSECLMAERERFMELLGKERQERIHLEAFACSLVQAAFRGYLLRKR 205
BLAST of mRNA_H-paniculata_contig143.2600.1 vs. uniprot
Match: A0A7S3ERN8_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3ERN8_9EUKA) HSP 1 Score: 54.3 bits (129), Expect = 7.410e-5 Identity = 44/112 (39.29%), Postives = 56/112 (50.00%), Query Frame = 1
Query: 1450 NTLLAAVADGTSPLSLVRA--ILKWGVDINAVNCRGESALQLAMAKRNVEVVDLLMNHPDTQLGQHKAGKSLLHKAAAL----GLHHLTAQLVARELDVNGVDPENGWSPVH 1767
+++L A G + SL +A +LK ++AVN RGESAL A+ V LL+ H T L AG SLLH AA L A L A LD+N D E G P+H
Sbjct: 8 HSVLVAAGAGDADASLEKATLLLKAKASVDAVNGRGESALDAALFHSTSSAVQLLLRHGATSLVTTAAGGSLLHSAAESLRPEVLELALAALNAIRLDLNQPDTE-GRPPLH 118 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig143.2600.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig143.2600.1 >prot_H-paniculata_contig143.2600.1 ID=prot_H-paniculata_contig143.2600.1|Name=mRNA_H-paniculata_contig143.2600.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1652bp MSIGPALYLWTHRLTNADVVSVVTTTSPFNGAGNGGAPPDESSRGIFTGPback to top mRNA from alignment at H-paniculata_contig143:29618..49364- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig143.2600.1 ID=mRNA_H-paniculata_contig143.2600.1|Name=mRNA_H-paniculata_contig143.2600.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=19747bp|location=Sequence derived from alignment at H-paniculata_contig143:29618..49364- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig143:29618..49364- >mRNA_H-paniculata_contig143.2600.1 ID=mRNA_H-paniculata_contig143.2600.1|Name=mRNA_H-paniculata_contig143.2600.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=9912bp|location=Sequence derived from alignment at H-paniculata_contig143:29618..49364- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |