mRNA_H-paniculata_contig14292.2597.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14292.2597.1
Unique NamemRNA_H-paniculata_contig14292.2597.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14292.2597.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14292contigH-paniculata_contig14292:2452..4796 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons3
Model size1769
Cds size1275
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14292.2597.1prot_H-paniculata_contig14292.2597.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14292 2908..4717 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929137.7242014-UTR-H-paniculata_contig14292:2451..26911622929137.7242014-UTR-H-paniculata_contig14292:2451..2691Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14292 2452..2691 -
1691480745.7835104-UTR-H-paniculata_contig14292:2451..26911691480745.7835104-UTR-H-paniculata_contig14292:2451..2691Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14292 2452..2691 -
1622929137.7383134-UTR-H-paniculata_contig14292:2732..29071622929137.7383134-UTR-H-paniculata_contig14292:2732..2907Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14292 2733..2907 -
1691480745.795703-UTR-H-paniculata_contig14292:2732..29071691480745.795703-UTR-H-paniculata_contig14292:2732..2907Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14292 2733..2907 -
1622929137.800858-UTR-H-paniculata_contig14292:4717..47961622929137.800858-UTR-H-paniculata_contig14292:4717..4796Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14292 4718..4796 -
1691480745.820353-UTR-H-paniculata_contig14292:4717..47961691480745.820353-UTR-H-paniculata_contig14292:4717..4796Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14292 4718..4796 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929137.7573373-CDS-H-paniculata_contig14292:2907..41501622929137.7573373-CDS-H-paniculata_contig14292:2907..4150Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14292 2908..4150 -
1691480745.8038871-CDS-H-paniculata_contig14292:2907..41501691480745.8038871-CDS-H-paniculata_contig14292:2907..4150Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14292 2908..4150 -
1622929137.7800598-CDS-H-paniculata_contig14292:4685..47171622929137.7800598-CDS-H-paniculata_contig14292:4685..4717Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14292 4686..4717 -
1691480745.811845-CDS-H-paniculata_contig14292:4685..47171691480745.811845-CDS-H-paniculata_contig14292:4685..4717Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14292 4686..4717 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14292.2597.1

>prot_H-paniculata_contig14292.2597.1 ID=prot_H-paniculata_contig14292.2597.1|Name=mRNA_H-paniculata_contig14292.2597.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=425bp
MKALGILQKHRLTSTAAAVKAGTHGGQRVKGATAATPVGAMAEAAGGKRL
RTETRMPQQQQQQQQQDVVLETPKKRIPQQKAPIADCNNPLPLHPKASSW
PKALTADVRVTAAAATVVMTDVDEGAAEGVGGESQRPRAEAGQGRVCAGS
SEILEIGNAVAVPKKKTKPSSDDGDDGCIDSRLIVVPATSVTEDGMATGT
AMAMATASDVATAGTADLAQEGSCIFSSSSNSSCSSRDSARGRSAGNDIS
CMVGTTGREQAGGDGPSASTSIECNRQTEPTSCGGTVDDGPGDIVSATAG
EAQATIVTKKIVSSGGSTGQRVPTATDASIAAGAIVSAACVPLEGGGVGA
IDGRGGDQCGGLGGERECDNFVQAGTGLATDSADTGGGGGGGSDGGMGGL
LSQSSRVSPVLSAGVAGAGLMTGT*
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mRNA from alignment at H-paniculata_contig14292:2452..4796-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14292.2597.1 ID=mRNA_H-paniculata_contig14292.2597.1|Name=mRNA_H-paniculata_contig14292.2597.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2345bp|location=Sequence derived from alignment at H-paniculata_contig14292:2452..4796- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCGGGTGGTGGAGGTGGAGGTGGGAAGGGTGGTGCAGGCGGCACCGTGG
CGGGAGCGGCGGCGGCGAAAGCGACGCAAATGAAGGCTCTGGGGATATTG
CAGAAGCACAGGTAGAGTGTTGTTGTTGTTGTTTTAGAGGAATGAAAATT
CTAAATATTGGCTCTGTTTTGAGTGTGTGTGTTTCTTGCTTTTTCATTTG
CCTCTAAACGTGGTATTTGATCCACCCGTCACCCCGCCTGTGGTTAACGT
GCTTGCTCATTAGTACATAATGACATCGTTACGGACGAAAGCGTCGCTAC
GTCGTACGGTGCAGCATACCACAGCGTAATTCTTGCTACTTCTCGTTATT
TAGAGACGGCATAGTACAGCAGTAACGTCCATTCTGAACTTCACTGACTA
TATTTGGTGTATGCGTACTGTTTGTGGATAATAACCAAGTAATCCAGCAG
CTTGAAGATGTTGAGCATACGTGCAGTTAGTATTTTAGGGTTATTGCCAT
ACTGTTTTCTACACTGGGCAGGAACTAGTACAGTATGTGTCACTACTTTG
ACGTGCCCTTTATTCCCACGATATTTTTTCCTAACCACATCCCCCCCCCC
CCCCCCGACACACACACACACACACACATTCCTCCCGTCCAAACAGGCTT
ACGTCAACCGCAGCAGCCGTGAAAGCAGGGACGCACGGAGGCCAACGGGT
GAAGGGAGCGACGGCAGCTACACCGGTAGGGGCAATGGCAGAAGCTGCGG
GGGGCAAGCGGCTTCGGACGGAGACAAGAATGCCACAACAGCAGCAGCAA
CAACAACAACAAGATGTAGTCCTCGAGACACCGAAAAAGAGAATACCGCA
GCAAAAGGCGCCGATTGCAGATTGCAACAACCCTCTTCCTCTCCACCCCA
AAGCTTCCAGCTGGCCGAAAGCTTTGACGGCGGACGTTCGGGTTACTGCT
GCTGCTGCTACCGTTGTGATGACAGATGTAGACGAAGGAGCAGCAGAGGG
GGTAGGAGGGGAGTCGCAGCGGCCCAGGGCAGAGGCGGGTCAGGGGCGGG
TCTGCGCTGGTAGTAGCGAGATACTGGAGATTGGGAACGCCGTGGCAGTC
CCCAAGAAAAAGACGAAACCATCATCGGACGATGGTGATGACGGTTGTAT
CGACTCTCGGTTAATCGTAGTACCAGCAACGAGCGTGACTGAGGATGGCA
TGGCGACGGGGACAGCAATGGCGATGGCGACGGCAAGTGACGTCGCCACC
GCTGGTACTGCGGACTTGGCACAGGAGGGAAGTTGTATTTTTAGTAGTAG
TAGTAATAGTAGCTGTAGTAGTAGGGATAGTGCTAGGGGTCGAAGTGCAG
GGAACGACATTTCGTGTATGGTCGGGACGACGGGTCGTGAGCAAGCCGGC
GGTGATGGTCCTTCTGCTTCCACTTCAATAGAGTGCAACCGGCAAACTGA
ACCCACTTCTTGTGGTGGAACAGTCGACGACGGCCCTGGTGATATCGTTT
CTGCTACCGCTGGTGAAGCGCAAGCGACAATTGTGACGAAGAAAATTGTT
AGCAGTGGTGGTAGCACTGGCCAGCGTGTCCCCACCGCGACCGATGCTAG
CATCGCTGCTGGTGCTATTGTTTCTGCTGCTTGTGTTCCTTTGGAGGGTG
GTGGGGTTGGCGCTATTGATGGTCGTGGCGGTGATCAGTGCGGGGGGCTC
GGGGGGGAACGCGAATGCGATAATTTTGTGCAAGCGGGTACGGGGCTTGC
TACGGATAGCGCGGACACCGGTGGCGGTGGCGGCGGTGGTAGCGATGGCG
GCATGGGAGGACTATTGTCGCAGAGTAGCAGGGTGTCTCCTGTATTGTCG
GCTGGTGTTGCGGGGGCAGGGTTGATGACGGGCACCTAGGATAGGACACG
TGTGAATGGATCATCAGATCTTTTTCCTTTGTCGTTACGAACATACGAGA
AAATTTCACAGCAGGGAACGGATGAAGTGCATTATTCGACAATATTTGTA
TGCATGCTCACTCTTCAGTGCAATCACTCGCTCGCCCGGCTTGACCCAGC
TCGCGACGAGTGCAGTGTGCGGTTGGCACCTCGCAGTCAGGCGTTGGGTT
GGCAGATGGATTCATGGTGTATTCGGAAAAAAGTGATATTATTTGCGACA
TGTTTCAGCTTGTACATGATTTCATTCCGCCACGGGTGGAGAAATTTATG
AGGGATCGGCGCACTTGATTGTATATTATTCATATTTAGATGCCCGTGTT
TGCCGGCGCCTTTTATGTCAAGCCTCAGTATCGCTAGATTTTCAACGGAC
AAGTAGTCGGCTATGACCGACTATAATACTAGGTTTCATGACGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig14292:2452..4796-

>mRNA_H-paniculata_contig14292.2597.1 ID=mRNA_H-paniculata_contig14292.2597.1|Name=mRNA_H-paniculata_contig14292.2597.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2550bp|location=Sequence derived from alignment at H-paniculata_contig14292:2452..4796- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGGCTCTGGGGATATTGCAGAAGCACAGATGAAGGCTCTGGGGATA
TTGCAGAAGCACAGGCTTACGTCAACCGCAGCAGCCGTGAAAGCAGGGAC
GCACGGAGGCCAACGGGTGAAGGGAGCGACGGCAGCTACACCGGTAGGGG
CAATGGCAGAAGCTGCGGGGGGCAAGCGGCTTCGGACGGAGACAAGAATG
CCACAACAGCAGCAGCAACAACAACAACAAGATGTAGTCCTCGAGACACC
GAAAAAGAGAATACCGCAGCAAAAGGCGCCGATTGCAGATTGCAACAACC
CTCTTCCTCTCCACCCCAAAGCTTCCAGCTGGCCGAAAGCTTTGACGGCG
GACGTTCGGGTTACTGCTGCTGCTGCTACCGTTGTGATGACAGATGTAGA
CGAAGGAGCAGCAGAGGGGGTAGGAGGGGAGTCGCAGCGGCCCAGGGCAG
AGGCGGGTCAGGGGCGGGTCTGCGCTGGTAGTAGCGAGATACTGGAGATT
GGGAACGCCGTGGCAGTCCCCAAGAAAAAGACGAAACCATCATCGGACGA
TGGTGATGACGGTTGTATCGACTCTCGGTTAATCGTAGTACCAGCAACGA
GCGTGACTGAGGATGGCATGGCGACGGGGACAGCAATGGCGATGGCGACG
GCAAGTGACGTCGCCACCGCTGGTACTGCGGACTTGGCACAGGAGGGAAG
TTGTATTTTTAGTAGTAGTAGTAATAGTAGCTGTAGTAGTAGGGATAGTG
CTAGGGGTCGAAGTGCAGGGAACGACATTTCGTGTATGGTCGGGACGACG
GGTCGTGAGCAAGCCGGCGGTGATGGTCCTTCTGCTTCCACTTCAATAGA
GTGCAACCGGCAAACTGAACCCACTTCTTGTGGTGGAACAGTCGACGACG
GCCCTGGTGATATCGTTTCTGCTACCGCTGGTGAAGCGCAAGCGACAATT
GTGACGAAGAAAATTGTTAGCAGTGGTGGTAGCACTGGCCAGCGTGTCCC
CACCGCGACCGATGCTAGCATCGCTGCTGGTGCTATTGTTTCTGCTGCTT
GTGTTCCTTTGGAGGGTGGTGGGGTTGGCGCTATTGATGGTCGTGGCGGT
GATCAGTGCGGGGGGCTCGGGGGGGAACGCGAATGCGATAATTTTGTGCA
AGCGGGTACGGGGCTTGCTACGGATAGCGCGGACACCGGTGGCGGTGGCG
GCGGTGGTAGCGATGGCGGCATGGGAGGACTATTGTCGCAGAGTAGCAGG
GTGTCTCCTGTATTGTCGGCTGGTGTTGCGGGGGCAGGGTTGATGACGGG
CACCTAGGCTTACGTCAACCGCAGCAGCCGTGAAAGCAGGGACGCACGGA
GGCCAACGGGTGAAGGGAGCGACGGCAGCTACACCGGTAGGGGCAATGGC
AGAAGCTGCGGGGGGCAAGCGGCTTCGGACGGAGACAAGAATGCCACAAC
AGCAGCAGCAACAACAACAACAAGATGTAGTCCTCGAGACACCGAAAAAG
AGAATACCGCAGCAAAAGGCGCCGATTGCAGATTGCAACAACCCTCTTCC
TCTCCACCCCAAAGCTTCCAGCTGGCCGAAAGCTTTGACGGCGGACGTTC
GGGTTACTGCTGCTGCTGCTACCGTTGTGATGACAGATGTAGACGAAGGA
GCAGCAGAGGGGGTAGGAGGGGAGTCGCAGCGGCCCAGGGCAGAGGCGGG
TCAGGGGCGGGTCTGCGCTGGTAGTAGCGAGATACTGGAGATTGGGAACG
CCGTGGCAGTCCCCAAGAAAAAGACGAAACCATCATCGGACGATGGTGAT
GACGGTTGTATCGACTCTCGGTTAATCGTAGTACCAGCAACGAGCGTGAC
TGAGGATGGCATGGCGACGGGGACAGCAATGGCGATGGCGACGGCAAGTG
ACGTCGCCACCGCTGGTACTGCGGACTTGGCACAGGAGGGAAGTTGTATT
TTTAGTAGTAGTAGTAATAGTAGCTGTAGTAGTAGGGATAGTGCTAGGGG
TCGAAGTGCAGGGAACGACATTTCGTGTATGGTCGGGACGACGGGTCGTG
AGCAAGCCGGCGGTGATGGTCCTTCTGCTTCCACTTCAATAGAGTGCAAC
CGGCAAACTGAACCCACTTCTTGTGGTGGAACAGTCGACGACGGCCCTGG
TGATATCGTTTCTGCTACCGCTGGTGAAGCGCAAGCGACAATTGTGACGA
AGAAAATTGTTAGCAGTGGTGGTAGCACTGGCCAGCGTGTCCCCACCGCG
ACCGATGCTAGCATCGCTGCTGGTGCTATTGTTTCTGCTGCTTGTGTTCC
TTTGGAGGGTGGTGGGGTTGGCGCTATTGATGGTCGTGGCGGTGATCAGT
GCGGGGGGCTCGGGGGGGAACGCGAATGCGATAATTTTGTGCAAGCGGGT
ACGGGGCTTGCTACGGATAGCGCGGACACCGGTGGCGGTGGCGGCGGTGG
TAGCGATGGCGGCATGGGAGGACTATTGTCGCAGAGTAGCAGGGTGTCTC
CTGTATTGTCGGCTGGTGTTGCGGGGGCAGGGTTGATGACGGGCACCTAG
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