mRNA_H-paniculata_contig14289.2593.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14289.2593.1
Unique NamemRNA_H-paniculata_contig14289.2593.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14289.2593.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14289contigH-paniculata_contig14289:2620..3287 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size670
Cds size372
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929137.1685643-UTR-H-paniculata_contig14289:2619..29151622929137.1685643-UTR-H-paniculata_contig14289:2619..2915Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14289 2620..2915 +
1691480745.5331256-UTR-H-paniculata_contig14289:2619..29151691480745.5331256-UTR-H-paniculata_contig14289:2619..2915Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14289 2620..2915 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929137.1880438-CDS-H-paniculata_contig14289:2915..32871622929137.1880438-CDS-H-paniculata_contig14289:2915..3287Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14289 2916..3287 +
1691480745.542811-CDS-H-paniculata_contig14289:2915..32871691480745.542811-CDS-H-paniculata_contig14289:2915..3287Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14289 2916..3287 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14289.2593.1prot_H-paniculata_contig14289.2593.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14289 2916..3287 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14289.2593.1

>prot_H-paniculata_contig14289.2593.1 ID=prot_H-paniculata_contig14289.2593.1|Name=mRNA_H-paniculata_contig14289.2593.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=124bp
MRRLTGGTHVPTAPDIVLQLCALKMTILNITAPLKIRSPPRTPAMGATET
ARASAVVESSTQIMRAHTELTEAAQETSELLCHDIDWRWWDKRYGPLNAW
VTDHQFDMQMMMHPARAPLFHVDI
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mRNA from alignment at H-paniculata_contig14289:2620..3287+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14289.2593.1 ID=mRNA_H-paniculata_contig14289.2593.1|Name=mRNA_H-paniculata_contig14289.2593.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=668bp|location=Sequence derived from alignment at H-paniculata_contig14289:2620..3287+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CATTTATCATGCTAACAGCAATATTTAAGCGCAAGAACCCGAAATATGCA
TAGATCTTCACTTGATTGGGCCCTGTGAGAACAATTTTTCATTTTCTGAG
TATTCGAGCACATGATTCAATCTATAATTTACTAATGCGTTGTTGTAGTC
GAAAGGTCAACCGTTATCACTGACTATGTATGGACAAGAAATATCAATCT
ATCCTGCCCCCGCCTTGTCGGTTACACTGGTATAGGGGAATTTCCTCGCG
GAGCAGGCTGAGCTGTACTCGGGTTTCACAAGGACCAAGCTGACGAATGC
GACGCCTCACTGGTGGAACGCATGTCCCCACAGCACCGGACATCGTCTTG
CAGCTCTGCGCGCTGAAGATGACGATTCTCAACATCACTGCCCCGTTAAA
AATTCGGAGCCCCCCGCGTACCCCGGCCATGGGGGCTACCGAGACCGCTC
GGGCGTCAGCAGTGGTCGAATCATCCACGCAAATCATGAGAGCCCACACA
GAATTGACGGAGGCGGCTCAGGAAACGAGCGAGCTCCTCTGTCATGACAT
CGACTGGCGATGGTGGGACAAGCGATATGGCCCGCTGAATGCATGGGTCA
CGGACCATCAGTTCGACATGCAGATGATGATGCACCCTGCTAGGGCCCCC
CTTTTCCACGTCGATATC
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Coding sequence (CDS) from alignment at H-paniculata_contig14289:2620..3287+

>mRNA_H-paniculata_contig14289.2593.1 ID=mRNA_H-paniculata_contig14289.2593.1|Name=mRNA_H-paniculata_contig14289.2593.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=744bp|location=Sequence derived from alignment at H-paniculata_contig14289:2620..3287+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGACGCCTCACTGGTGGAACGCATGTCCCCACAGCACCGGACATCGT
CTTGCAGCTCTGCGCGCTGAAGATGACGATTCTCAACATCACTGCCCCGT
TAAAAATTCGGAGCCCCCCGCGTACCCCGGCCATGGGGGCTACCGAGACC
GCTCGGGCGTCAGCAGTGGTCGAATCATCCACGCAAATCATGAGAGCCCA
CACAGAATTGACGGAGGCGGCTCAGGAAACGAGCGAGCTCCTCTGTCATG
ACATCGACTGGCGATGGTGGGACAAGCGATATGGCCCGCTGAATGCATGG
GTCACGGACCATCAGTTCGACATGCAGATGATGATGCACCCTGCTAGGGC
CCCCCTTTTCCACGTCGATATCATGCGACGCCTCACTGGTGGAACGCATG
TCCCCACAGCACCGGACATCGTCTTGCAGCTCTGCGCGCTGAAGATGACG
ATTCTCAACATCACTGCCCCGTTAAAAATTCGGAGCCCCCCGCGTACCCC
GGCCATGGGGGCTACCGAGACCGCTCGGGCGTCAGCAGTGGTCGAATCAT
CCACGCAAATCATGAGAGCCCACACAGAATTGACGGAGGCGGCTCAGGAA
ACGAGCGAGCTCCTCTGTCATGACATCGACTGGCGATGGTGGGACAAGCG
ATATGGCCCGCTGAATGCATGGGTCACGGACCATCAGTTCGACATGCAGA
TGATGATGCACCCTGCTAGGGCCCCCCTTTTCCACGTCGATATC
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