mRNA_H-paniculata_contig1428.2592.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1428.2592.1
Unique NamemRNA_H-paniculata_contig1428.2592.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig1428.2592.1 vs. uniprot
Match: D8LNU8_ECTSI (60S ribosomal protein L10A n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNU8_ECTSI)

HSP 1 Score: 431 bits (1107), Expect = 3.420e-148
Identity = 218/230 (94.78%), Postives = 226/230 (98.26%), Query Frame = 1 
Query:    1 MTSKLNGDLVAKAVDEILSYSAGETYKKGDTEVVGKKRKFTESIELQVTLKNYDPQRDKRFSGTFKLPTIPRPRMKLCMLGNAVHCEQAEQIGLDHMSVEDLKKFNKNKNLIKKFAKKYDAFLASDSLIKQIPRLLGPGLTKAGKFPTLVNAGDNLQSKVDTVRATIKFQMKKVMCLSVAVANVEQPKNEIELNVQLAANFLASLLKKNWQNIKVMYVKSTMGPVHQIYF 690
            M+SKLN +LV KAVD+IL++SAGET KKG+TE+VGKKRKFTESIELQVTLKNYDPQRDKRFSGTFKLPTIPRPRMKLCMLGNAVHCEQAEQIGLD MSVEDLKKFNKNKNLIKKFAKKYDAFLASDSLIKQIPRLLGPGLTKAGKFPTLVNAGDNLQSKVDTVRATIKFQMKKVMCLSVAVANVEQPKNEIELNVQLAANFLASLLKKNWQNIKVMYVKSTMGPVHQI+F
Sbjct:    1 MSSKLNSELVTKAVDDILAFSAGETIKKGETEIVGKKRKFTESIELQVTLKNYDPQRDKRFSGTFKLPTIPRPRMKLCMLGNAVHCEQAEQIGLDRMSVEDLKKFNKNKNLIKKFAKKYDAFLASDSLIKQIPRLLGPGLTKAGKFPTLVNAGDNLQSKVDTVRATIKFQMKKVMCLSVAVANVEQPKNEIELNVQLAANFLASLLKKNWQNIKVMYVKSTMGPVHQIFF 230
[Close]
BLAST of mRNA_H-paniculata_contig1428.2592.1 vs. uniprot
Match: A0A835ZBY1_9STRA (60S ribosomal protein L10A n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBY1_9STRA)

HSP 1 Score: 362 bits (929), Expect = 3.210e-121
Identity = 179/228 (78.51%), Postives = 206/228 (90.35%), Query Frame = 1 
Query:    7 SKLNGDLVAKAVDEILSYSAGETYKKGDTEVVGKKRKFTESIELQVTLKNYDPQRDKRFSGTFKLPTIPRPRMKLCMLGNAVHCEQAEQIGLDHMSVEDLKKFNKNKNLIKKFAKKYDAFLASDSLIKQIPRLLGPGLTKAGKFPTLVNAGDNLQSKVDTVRATIKFQMKKVMCLSVAVANVEQPKNEIELNVQLAANFLASLLKKNWQNIKVMYVKSTMGPVHQIYF 690
            SKL  D++++AV++++++S+G++  K   EV GKKRKFTES+ELQV+LKNYDPQRDKRFSGTFKLPT+PRP +K+CMLGNAVHCE+AE +G+D MSVEDLKKFNKNK +IKKFAKKYDAFLASD+LIKQIPRLLGPGLTKAGKFPTLV A D++Q K DTVRATIKFQMKKVMCLSVAVANVEQ K+EI LNVQLAANFLASLLKKNWQNI  MY+KSTMGP  QIYF
Sbjct:    2 SKLQSDILSQAVEDLMAFSSGKSITKDGEEVKGKKRKFTESVELQVSLKNYDPQRDKRFSGTFKLPTVPRPNLKICMLGNAVHCEKAEALGMDKMSVEDLKKFNKNKKIIKKFAKKYDAFLASDTLIKQIPRLLGPGLTKAGKFPTLVAATDDIQEKADTVRATIKFQMKKVMCLSVAVANVEQTKDEIVLNVQLAANFLASLLKKNWQNIASMYIKSTMGPPQQIYF 229
[Close]
BLAST of mRNA_H-paniculata_contig1428.2592.1 vs. uniprot
Match: A0A6V1MVV2_HETAK (Ribosomal protein n=3 Tax=Sar TaxID=2698737 RepID=A0A6V1MVV2_HETAK)

HSP 1 Score: 347 bits (890), Expect = 2.570e-115
Identity = 175/228 (76.75%), Postives = 196/228 (85.96%), Query Frame = 1 
Query:    7 SKLNGDLVAKAVDEILSYSAGETYKKGDTEVVGKKRKFTESIELQVTLKNYDPQRDKRFSGTFKLPTIPRPRMKLCMLGNAVHCEQAEQIGLDHMSVEDLKKFNKNKNLIKKFAKKYDAFLASDSLIKQIPRLLGPGLTKAGKFPTLVNAGDNLQSKVDTVRATIKFQMKKVMCLSVAVANVEQPKNEIELNVQLAANFLASLLKKNWQNIKVMYVKSTMGPVHQIYF 690
            SKL+ +L+  AV+++L+Y+ GET  K   E+ GKKR F E+IELQV LKNYDPQRDKRFSGTFKLPT+PRP M +C+LGNAVHCEQA QIG+D MSVEDLKK NKNK LIKK AKKY AFLASD+LIKQIPRLLGPGL KAGKFPTLV +G++LQ KVDTVRATIKFQMKKVMC+SVAV N  Q + EI LNVQLAANFLASLLKKNWQNIKVMY+KSTMGP  QIYF
Sbjct:    2 SKLSNELLDAAVNDVLAYAKGETISKNGEELKGKKRNFVETIELQVALKNYDPQRDKRFSGTFKLPTVPRPNMTVCVLGNAVHCEQAAQIGIDAMSVEDLKKLNKNKKLIKKLAKKYMAFLASDTLIKQIPRLLGPGLNKAGKFPTLVASGEDLQEKVDTVRATIKFQMKKVMCMSVAVGNCNQAQEEISLNVQLAANFLASLLKKNWQNIKVMYIKSTMGPSFQIYF 229
[Close]
BLAST of mRNA_H-paniculata_contig1428.2592.1 vs. uniprot
Match: A0A7S2UTZ7_9STRA (Ribosomal protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UTZ7_9STRA)

HSP 1 Score: 348 bits (892), Expect = 3.290e-115
Identity = 170/228 (74.56%), Postives = 200/228 (87.72%), Query Frame = 1 
Query:    7 SKLNGDLVAKAVDEILSYSAGETYKKGDTEVVGKKRKFTESIELQVTLKNYDPQRDKRFSGTFKLPTIPRPRMKLCMLGNAVHCEQAEQIGLDHMSVEDLKKFNKNKNLIKKFAKKYDAFLASDSLIKQIPRLLGPGLTKAGKFPTLVNAGDNLQSKVDTVRATIKFQMKKVMCLSVAVANVEQPKNEIELNVQLAANFLASLLKKNWQNIKVMYVKSTMGPVHQIYF 690
            SKL+ +L+ K++++I +YS GET  +G  E+ GKKRKFTE+IELQV LKNYDPQRDKRFSGTFKLPTIPRP +K+C+LGNAVHCE+A +  LD MSVEDLKK NKNK LIKK AKKYDAFLASD+LIKQIPRLLGPGL KAGKFPTLV +G++LQ K D+VRATIKFQMKKVMCL+VA+ NV+ P  +++LNVQLAANFLASLLKKNWQNIKVMY+KSTMGP  QI++
Sbjct:   29 SKLSSELLQKSLEDIFAYSKGETITRGGEEIKGKKRKFTETIELQVALKNYDPQRDKRFSGTFKLPTIPRPNLKICVLGNAVHCEEAGKANLDAMSVEDLKKLNKNKKLIKKLAKKYDAFLASDTLIKQIPRLLGPGLNKAGKFPTLVTSGESLQDKADSVRATIKFQMKKVMCLNVAIGNVDMPIEDVQLNVQLAANFLASLLKKNWQNIKVMYIKSTMGPPFQIFY 256
[Close]
BLAST of mRNA_H-paniculata_contig1428.2592.1 vs. uniprot
Match: A0A7S4E450_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E450_9STRA)

HSP 1 Score: 340 bits (873), Expect = 9.570e-113
Identity = 168/228 (73.68%), Postives = 196/228 (85.96%), Query Frame = 1 
Query:    7 SKLNGDLVAKAVDEILSYSAGETYKKGDTEVVGKKRKFTESIELQVTLKNYDPQRDKRFSGTFKLPTIPRPRMKLCMLGNAVHCEQAEQIGLDHMSVEDLKKFNKNKNLIKKFAKKYDAFLASDSLIKQIPRLLGPGLTKAGKFPTLVNAGDNLQSKVDTVRATIKFQMKKVMCLSVAVANVEQPKNEIELNVQLAANFLASLLKKNWQNIKVMYVKSTMGPVHQIYF 690
            SKLN DLV  A+D+IL+YS+GET +    +V GKKRKF E+I+LQ+ LKNYDPQRDKRFSGTFKLP +PRP +K C++GNAVHCE+AE+IG+D MSV+DLKKFNKNK +IKKFAKK+DAFLASD+LIKQIPRLLGPGLTKAGKFPTL+  G +L  K+D VRATIKFQMKKVMCL+VAV NV   K +I  NV LA+NFLASLLKKNWQNIKV+YVKSTMGP  QI+F
Sbjct:    2 SKLNKDLVEGAIDKILAYSSGETIQHDGADVKGKKRKFVETIDLQIALKNYDPQRDKRFSGTFKLPVVPRPNLKCCIIGNAVHCEEAERIGVDKMSVDDLKKFNKNKKVIKKFAKKFDAFLASDTLIKQIPRLLGPGLTKAGKFPTLIEGGADLTEKIDGVRATIKFQMKKVMCLNVAVGNVSMEKAQIVTNVTLASNFLASLLKKNWQNIKVLYVKSTMGPPQQIFF 229
[Close]
BLAST of mRNA_H-paniculata_contig1428.2592.1 vs. uniprot
Match: A0A7S2SBK4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SBK4_9STRA)

HSP 1 Score: 341 bits (874), Expect = 1.180e-112
Identity = 165/228 (72.37%), Postives = 199/228 (87.28%), Query Frame = 1 
Query:    7 SKLNGDLVAKAVDEILSYSAGETYKKGDTEVVGKKRKFTESIELQVTLKNYDPQRDKRFSGTFKLPTIPRPRMKLCMLGNAVHCEQAEQIGLDHMSVEDLKKFNKNKNLIKKFAKKYDAFLASDSLIKQIPRLLGPGLTKAGKFPTLVNAGDNLQSKVDTVRATIKFQMKKVMCLSVAVANVEQPKNEIELNVQLAANFLASLLKKNWQNIKVMYVKSTMGPVHQIYF 690
            SKLN ++VA A+ ++L+Y+ GET  K   E+ GK+RKFTE+I+LQ+ LKNYDP RDKRFSGTFKLPTIPRP MK+C+LGNAVHCE+AE+IG++H SVEDLKKFNKNK +IKKFAKKYDAF+ASD+LIKQIPRLLGPGLTKAGKFPTL+  G  LQ  +DT++ATIKFQMKKVMCL+VAV N+ Q  +EI LN+QLA+NFLASLLKK WQNIKVMY+KSTMGP  Q+++
Sbjct:   18 SKLNKEIVANALTKVLAYANGETVVKDGQEIEGKQRKFTETIDLQIALKNYDPSRDKRFSGTFKLPTIPRPNMKVCVLGNAVHCEEAERIGVEHKSVEDLKKFNKNKKIIKKFAKKYDAFVASDTLIKQIPRLLGPGLTKAGKFPTLIAPGQELQECIDTLKATIKFQMKKVMCLNVAVGNLGQTHDEILLNIQLASNFLASLLKKGWQNIKVMYIKSTMGPAFQVFY 245
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BLAST of mRNA_H-paniculata_contig1428.2592.1 vs. uniprot
Match: A0A6V2ARP3_9STRA (Hypothetical protein n=2 Tax=Sar TaxID=2698737 RepID=A0A6V2ARP3_9STRA)

HSP 1 Score: 336 bits (862), Expect = 4.570e-111
Identity = 163/230 (70.87%), Postives = 197/230 (85.65%), Query Frame = 1 
Query:    1 MTSKLNGDLVAKAVDEILSYSAGETYKKGDTEVVGKKRKFTESIELQVTLKNYDPQRDKRFSGTFKLPTIPRPRMKLCMLGNAVHCEQAEQIGLDHMSVEDLKKFNKNKNLIKKFAKKYDAFLASDSLIKQIPRLLGPGLTKAGKFPTLVNAGDNLQSKVDTVRATIKFQMKKVMCLSVAVANVEQPKNEIELNVQLAANFLASLLKKNWQNIKVMYVKSTMGPVHQIYF 690
            M++KLN  L+ KAV +IL+YSAGET   G  EV GKKR F E+IE+QVTLKNYDPQR+KRF+GTF+LP +PRP +K CMLGNA HCEQA++IG+DHMSVEDLKK N+NK L+KK AKKYD FLASD++IKQIPRLLGPGLTKAGKFPTL+++GD++Q K++ V++TIKFQMKKV CL+VAVANV   K ++ +NVQLAANFLASLLKK WQNI  MY+KSTMGP  QI+F
Sbjct:    1 MSNKLNSALLEKAVTDILAYSAGETITMGKKEVTGKKRNFVETIEVQVTLKNYDPQREKRFAGTFRLPAVPRPNLKCCMLGNAAHCEQADRIGIDHMSVEDLKKLNRNKKLVKKLAKKYDFFLASDNMIKQIPRLLGPGLTKAGKFPTLLSSGDDMQDKIEEVKSTIKFQMKKVTCLNVAVANVGMDKQQVIVNVQLAANFLASLLKKQWQNIGQMYIKSTMGPPFQIFF 230
[Close]
BLAST of mRNA_H-paniculata_contig1428.2592.1 vs. uniprot
Match: F0WGZ9_9STRA (Ribosomal protein n=2 Tax=Albugo TaxID=65356 RepID=F0WGZ9_9STRA)

HSP 1 Score: 336 bits (861), Expect = 6.250e-111
Identity = 166/228 (72.81%), Postives = 195/228 (85.53%), Query Frame = 1 
Query:    7 SKLNGDLVAKAVDEILSYSAGETYKKGDTEVVGKKRKFTESIELQVTLKNYDPQRDKRFSGTFKLPTIPRPRMKLCMLGNAVHCEQAEQIGLDHMSVEDLKKFNKNKNLIKKFAKKYDAFLASDSLIKQIPRLLGPGLTKAGKFPTLVNAGDNLQSKVDTVRATIKFQMKKVMCLSVAVANVEQPKNEIELNVQLAANFLASLLKKNWQNIKVMYVKSTMGPVHQIYF 690
            SKLN +++ KAV+EIL+YS+GET      EV GK+R F E+IELQ+ LKNYDPQ+DKRFSGTFKLPT+PRP MK+C+LGNAVHCEQAE+ G + M+V+DLKKFNKNK +IKKFAKKYDAFLASD+LIKQIPRLLGPGL KAGKFPTLV + ++L  K D +RATIKFQMKKVMCL+VA+ +V     EI +N QLAANFLASLLKKNWQNIKVMY+KSTMGPV QIY+
Sbjct:    2 SKLNSEILEKAVNEILAYSSGETITVNGKEVKGKQRNFKETIELQIALKNYDPQKDKRFSGTFKLPTVPRPNMKICVLGNAVHCEQAEKDGFEFMTVDDLKKFNKNKKVIKKFAKKYDAFLASDTLIKQIPRLLGPGLNKAGKFPTLVGSSESLTEKADQLRATIKFQMKKVMCLNVAIGHVGLSTQEIVVNTQLAANFLASLLKKNWQNIKVMYLKSTMGPVQQIYY 229
[Close]
BLAST of mRNA_H-paniculata_contig1428.2592.1 vs. uniprot
Match: A0A7S2UER1_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UER1_9STRA)

HSP 1 Score: 336 bits (861), Expect = 6.470e-111
Identity = 164/230 (71.30%), Postives = 194/230 (84.35%), Query Frame = 1 
Query:    1 MTSKLNGDLVAKAVDEILSYSAGETYKKGDTEVVGKKRKFTESIELQVTLKNYDPQRDKRFSGTFKLPTIPRPRMKLCMLGNAVHCEQAEQIGLDHMSVEDLKKFNKNKNLIKKFAKKYDAFLASDSLIKQIPRLLGPGLTKAGKFPTLVNAGDNLQSKVDTVRATIKFQMKKVMCLSVAVANVEQPKNEIELNVQLAANFLASLLKKNWQNIKVMYVKSTMGPVHQIYF 690
            M +KLN  L+ KAV + L++++GET K+   EV GKKR FTE+ ELQ+TLKNYDPQRDKRFSGTFKLPT+PRP +K CMLGNA HCEQA++IG+DHMSVEDLKK NKNK L+KK AKKYD FLASD++IKQIPRLLGPGLTKAGKFP+L+ +G+++Q K+D V++TIKFQMKKVMCL+VAV NVE  K EI +NVQLA NFL SLLKK WQNI  +Y KSTMGP  QIYF
Sbjct:    1 MANKLNSALLEKAVSDALAFASGETIKRSGEEVKGKKRNFTETCELQITLKNYDPQRDKRFSGTFKLPTVPRPNLKCCMLGNAAHCEQADRIGVDHMSVEDLKKLNKNKKLVKKLAKKYDFFLASDNMIKQIPRLLGPGLTKAGKFPSLLASGEDMQEKIDEVKSTIKFQMKKVMCLNVAVGNVEMDKKEIIVNVQLATNFLVSLLKKQWQNIGQVYFKSTMGPAIQIYF 230
[Close]
BLAST of mRNA_H-paniculata_contig1428.2592.1 vs. uniprot
Match: A0A6U6D380_9STRA (Hypothetical protein n=3 Tax=Eupodiscales TaxID=33838 RepID=A0A6U6D380_9STRA)

HSP 1 Score: 335 bits (860), Expect = 9.160e-111
Identity = 160/230 (69.57%), Postives = 197/230 (85.65%), Query Frame = 1 
Query:    1 MTSKLNGDLVAKAVDEILSYSAGETYKKGDTEVVGKKRKFTESIELQVTLKNYDPQRDKRFSGTFKLPTIPRPRMKLCMLGNAVHCEQAEQIGLDHMSVEDLKKFNKNKNLIKKFAKKYDAFLASDSLIKQIPRLLGPGLTKAGKFPTLVNAGDNLQSKVDTVRATIKFQMKKVMCLSVAVANVEQPKNEIELNVQLAANFLASLLKKNWQNIKVMYVKSTMGPVHQIYF 690
            M++KLN  L+ KAV ++L+++AGET  KG  E+ GKKR F E++E Q+TLKNYDPQRDKRFSGTF+LPT+PRP +K CMLGNA HCEQA++IG+DHMSVEDLKK NKNK L+KK AK+YD FLASD++IKQIPRLLGPGLTKAGKFPTL+++ D++Q K+D V++TIKFQMKKVMCL+VAVANV+  K ++ +N QLA+NFL SLLKK WQNI  +YVKSTMGP  QIYF
Sbjct:    1 MSNKLNSALLDKAVTDLLAFAAGETITKGGEEMKGKKRNFVETVECQITLKNYDPQRDKRFSGTFRLPTVPRPNLKCCMLGNAAHCEQADRIGVDHMSVEDLKKLNKNKKLVKKLAKRYDFFLASDNMIKQIPRLLGPGLTKAGKFPTLLSSSDDMQEKIDEVKSTIKFQMKKVMCLNVAVANVDMDKQQVIVNTQLASNFLTSLLKKQWQNIGQIYVKSTMGPAFQIYF 230
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1428.2592.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNU8_ECTSI3.420e-14894.7860S ribosomal protein L10A n=2 Tax=Ectocarpus TaxI... [more]
A0A835ZBY1_9STRA3.210e-12178.5160S ribosomal protein L10A n=1 Tax=Tribonema minus... [more]
A0A6V1MVV2_HETAK2.570e-11576.75Ribosomal protein n=3 Tax=Sar TaxID=2698737 RepID=... [more]
A0A7S2UTZ7_9STRA3.290e-11574.56Ribosomal protein n=1 Tax=Fibrocapsa japonica TaxI... [more]
A0A7S4E450_9STRA9.570e-11373.68Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2SBK4_9STRA1.180e-11272.37Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6V2ARP3_9STRA4.570e-11170.87Hypothetical protein n=2 Tax=Sar TaxID=2698737 Rep... [more]
F0WGZ9_9STRA6.250e-11172.81Ribosomal protein n=2 Tax=Albugo TaxID=65356 RepID... [more]
A0A7S2UER1_9STRA6.470e-11171.30Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A6U6D380_9STRA9.160e-11169.57Hypothetical protein n=3 Tax=Eupodiscales TaxID=33... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1428contigH-paniculata_contig1428:19495..23951 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score433.0
Seed ortholog evalue9.1e-119
Seed eggNOG ortholog2880.D8LNU8
Preferred nameRPL10A
KEGG koko:K02865,ko:K04532
KEGG Pathwayko03010,ko05010,map03010,map05010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0000184,GO:0000470,GO:0000956,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005844,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009636,GO:0009892,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015934,GO:0016070,GO:0016071,GO:0016072,GO:0019222,GO:0019439,GO:0019538,GO:0022613,GO:0022625,GO:0022626,GO:0030684,GO:0030687,GO:0032991,GO:0033036,GO:0033365,GO:0034470,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0042221,GO:0042254,GO:0042273,GO:0042493,GO:0042788,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0045471,GO:0046483,GO:0046677,GO:0046700,GO:0046907,GO:0048519,GO:0050789,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060255,GO:0065007,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0097159,GO:0097305,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901700,GO:1990904
EggNOG free text desc.maturation of LSU-rRNA
EggNOG OGsCOG0081@1,KOG1570@2759
Ec32 ortholog descriptionRibosomal protein L1, 2-layer alpha/beta-sandwich
Ec32 orthologEc-08_005760.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko04121
Exons7
Model size1412
Cds size693
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1428.2592.1prot_H-paniculata_contig1428.2592.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1428 20214..23951 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929136.9666517-UTR-H-paniculata_contig1428:19494..202131622929136.9666517-UTR-H-paniculata_contig1428:19494..20213Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1428 19495..20213 -
1691480745.423828-UTR-H-paniculata_contig1428:19494..202131691480745.423828-UTR-H-paniculata_contig1428:19494..20213Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1428 19495..20213 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929136.979306-CDS-H-paniculata_contig1428:20213..202641622929136.979306-CDS-H-paniculata_contig1428:20213..20264Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1428 20214..20264 -
1691480745.4365313-CDS-H-paniculata_contig1428:20213..202641691480745.4365313-CDS-H-paniculata_contig1428:20213..20264Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1428 20214..20264 -
1622929136.9998498-CDS-H-paniculata_contig1428:20430..205531622929136.9998498-CDS-H-paniculata_contig1428:20430..20553Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1428 20431..20553 -
1691480745.4456651-CDS-H-paniculata_contig1428:20430..205531691480745.4456651-CDS-H-paniculata_contig1428:20430..20553Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1428 20431..20553 -
1622929137.0127223-CDS-H-paniculata_contig1428:20835..209611622929137.0127223-CDS-H-paniculata_contig1428:20835..20961Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1428 20836..20961 -
1691480745.4548295-CDS-H-paniculata_contig1428:20835..209611691480745.4548295-CDS-H-paniculata_contig1428:20835..20961Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1428 20836..20961 -
1622929137.0277565-CDS-H-paniculata_contig1428:21316..214451622929137.0277565-CDS-H-paniculata_contig1428:21316..21445Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1428 21317..21445 -
1691480745.4636066-CDS-H-paniculata_contig1428:21316..214451691480745.4636066-CDS-H-paniculata_contig1428:21316..21445Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1428 21317..21445 -
1622929137.042964-CDS-H-paniculata_contig1428:21733..217821622929137.042964-CDS-H-paniculata_contig1428:21733..21782Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1428 21734..21782 -
1691480745.4730873-CDS-H-paniculata_contig1428:21733..217821691480745.4730873-CDS-H-paniculata_contig1428:21733..21782Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1428 21734..21782 -
1622929137.0576751-CDS-H-paniculata_contig1428:22118..221921622929137.0576751-CDS-H-paniculata_contig1428:22118..22192Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1428 22119..22192 -
1691480745.4833565-CDS-H-paniculata_contig1428:22118..221921691480745.4833565-CDS-H-paniculata_contig1428:22118..22192Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1428 22119..22192 -
1622929137.0729063-CDS-H-paniculata_contig1428:23810..239511622929137.0729063-CDS-H-paniculata_contig1428:23810..23951Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1428 23811..23951 -
1691480745.4963229-CDS-H-paniculata_contig1428:23810..239511691480745.4963229-CDS-H-paniculata_contig1428:23810..23951Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1428 23811..23951 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1428.2592.1

>prot_H-paniculata_contig1428.2592.1 ID=prot_H-paniculata_contig1428.2592.1|Name=mRNA_H-paniculata_contig1428.2592.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=231bp
MTSKLNGDLVAKAVDEILSYSAGETYKKGDTEVVGKKRKFTESIELQVTL
KNYDPQRDKRFSGTFKLPTIPRPRMKLCMLGNAVHCEQAEQIGLDHMSVE
DLKKFNKNKNLIKKFAKKYDAFLASDSLIKQIPRLLGPGLTKAGKFPTLV
NAGDNLQSKVDTVRATIKFQMKKVMCLSVAVANVEQPKNEIELNVQLAAN
FLASLLKKNWQNIKVMYVKSTMGPVHQIYF*
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mRNA from alignment at H-paniculata_contig1428:19495..23951-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1428.2592.1 ID=mRNA_H-paniculata_contig1428.2592.1|Name=mRNA_H-paniculata_contig1428.2592.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4457bp|location=Sequence derived from alignment at H-paniculata_contig1428:19495..23951- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACTAGCAAGCTGAATGGCGACCTTGTAGCTAAGGCTGTGGATGAGAT
CCTCTCATACTCAGCGGGTGAGACCTACAAGAAGGGCGACACTGAAGTCG
TCGGCAAGAAGCGAAAGTTCACAGAGTCCATCGAGCTCCAGGTATGATAC
CTATCCTGTCAGTGAGGTCGCAATTGCCTTTCCTGAACATTTCTGTATCG
CCTGACCCTTGACGGAAGTAGTCGGCCAACTAGTTGCCTGCGCGCTGTAT
GCACAACTCTTGGATATTGGCTTGTCCATTTATATGGGTGTGGCCAAGAG
TCGTTACACAGTTGTCAGCTCGTACCAACATCTAGAGTTGTAATGGGTTG
CATTTTTCCTGGCAGGCGTACAACCACTGATTACACCAACTCTCAGTCAG
GTCATCACGGCTGGTTGCCTTTTTCCATTGGCCAACATCCACCCTCTCTG
GAGCTGATTTCCTTGTGAATGTGATAATAGGTTCCTGTCTGGCGTGCAAT
TTGGTATGTTTAAATTACTCCAGCTACACAGTCAGCTCATAGTGTGGTGT
TGGGTGTGGAGGATGACATATATCGGGTTTTCTCTCCGTGAGTCGTGAAC
CGTGGGTAACTGTCCTGGCGGCTGTTTCGGAACAAATCAACTTTTCGAAG
ATTCGGGTACCGTATTAGCGGCATGCATAATTTGGCGCTAGTGTTGCTAA
TTTGATATCGTAGCCCAGCGTTATCACCGCGTCTCTGACGGATCGGAGTA
CCGTACGCTAGTGTAGGAATACAAGCAGACTGCAGGAACTTGAAATCTGA
ATGACTAAAGAGATGGTTACTTGATGTTGAGAACGAAGTTGTCCTCTAAG
CAGCTGAGCGAATACTTTTTGTGTGCGAGAGGGCGCAGGGGTTATTAACT
GAATTCTTGACGCCATTGGTGAACCTTGGAAGAACACAGTTCCTTCAAAT
GGGTCGTTCTGGGTCAATATTTGTTTCGCTGTGACTTCGGTTCAAGTGGA
ACCTCTTACCAGAGCAAATAACATTCGTGTGAGAGGATGTACTACCTGTT
CAGTGTTCCCCGGCTTCAACGTGTATGCGTTGGCAATTCTGGTGAATGGT
CGGTCGACCGACTAATAAAAATAAAAAATGCGGTGACATTTATCGTTTTG
GAGGCTGGTACTAGCAAAAGCATGATGAACGACCTGTTGATGAACTCGTC
TGGAAGACACTTGTCCTGGTGTTGGATACGGTTTTGTGTTCAAAGGAGCA
ATTCACTAGCAGCTCTGCGCCCTTGAGGCTGTCTGCATGTTATCGGGAAA
AGTGCGAGTTCAAGGAAGGAATAAATACGAGAAATCTTGCAAGGATACTG
GAATTGTTTGAATTGGGCGATATGTTTTTACGTGATTTTTTTATGTTGTA
CTGGATGTAGCGCTGAATATCGAGAAACTAGCGTAAATGGAGTTTTATCA
TTCGTAAAATAAACAAAACCCCGCACGTTTGACTTCGCCAAATATTCGAC
CACCTCTCAACAGACAAATGATACTTCTTCGAGACAGCCGCGAATCCTCC
ATTTGGCCGTGTCCCGGTGTCATGAGGTAGTGTGTAGAGTTGACTGTAGC
TCGAGCTTTTCTTCTACGTGATGCGCAGATCGTGCTACCCACTTGTCCAC
AACCGTTCCTTAGTAAGTCACCAAACACCCGGTGATCATCCGGGATGGCT
GGCCCTTTGACGCTGTTGGTGTGCTGTCGTCTATGCTGTGCCCGCTGCTC
TCCCTGTAGGTGACCCTGAAGAACTATGACCCCCAGCGCGACAAGCGTTT
TTCTGGGACGTTCAAGTTGCCCACCATTCCCCGGTAAGTATGCATCATGA
AAAGCCGAGTATAATTTGTGTTGACATTATTTACAAGTGGTTCCTGTGAA
AGCGGGTCCACATTGCGTGTCGCGCAGAGCCCCGGTGGGCCTCACCTTAT
CCATGCGTCGTTGTTCCCACAAGCCTGGTGAAGATGGTGATCTCTGAACC
AATCGTCGTTTATTTGCTTCTTTTGCATACGTGACGCGGTGAACTATCTT
GCATCCTCCTGAACCCACTTTCCCACCTGCTTGTTGGTGTCCAACCCGTG
CCCGGTGTGTTCCAATGGACTGTCGAAATTACTCGGGATGGATACGTTTC
TGACGACGTCGATCCGTAGCCCGCGCATGAAGCTCTGCATGCTTGGTAAC
GCCGTGCACTGTGAACAGGTGAGGTTGATGACGTTTTGTGTTGAGTTTTG
CAGAGTATCGCCATCGCTGTGCAACGCTGGTCACATGCTCGACAAATTTA
CCCAGTACACGCGCACGGCAGCGAGGGTCGACACTGTAGTTCAGATCTCA
GATAATGTCCATGTTGATATGTTGACCCATCTGTAGGTGAGTTCAGGAAG
AGAAGAGGTGATGCTGAGTTGTGAAAGGCATGTGTAAAATGGTGCAAAGT
CCATGAGAATTTTTATTCCAGTATACTCGTGGTTTTTTTTTCTGTGCGAC
CAACAGGCGGAGCAAATCGGTCTTGACCACATGTCAGTGGAGGACCTCAA
GAAGTTCAACAAGAACAAGAACTTGATCAAGAAGTTCGCGAAGAAGTACG
ATGCCTTCCTCGCTTCCGACTCCCTTATCAAGCAGGTTAGACATCCGATC
TAAACAGCTGGAAATTAATCCACAGCCACGATATGAATTAACGTTTCGTC
TTTTCCAACAGAATTGTCCGAAAGGACTTCAAGAGCATTCCTTCACTGAT
GGGAGATGACACGGATAGATATTCCTGCGGAACGATCCCTAGTATAATGC
AGTAAGAGGATAATCTTGTCGCTCTCTCCAACTCGATTTTTTTCTATTCG
ACGCCGCACATGAAATCCGTCAAACGTGATATTTCCATGTCACATGTTGG
TACCAAGTCGTGTGAGTTAAACGTTCAAGATTACTCTCAACATGTCATGG
CAGTGCTCTCGACATGTGATGTGTTCGTGTGTCTACGCAGATCCCGCGTC
TGTTGGGTCCCGGTCTGACGAAGGCTGGTAAGTTCCCCACCCTGGTGAAC
GCTGGTGATAACCTTCAGAGCAAGGTGGACACTGTTCGTGCCACGATCAA
GTTCCAGATGAAGAAGGTAGGATGAAGGTTTATAGTGAGATTTTGTCAAG
TGTACTTTTCAAAAGCGGAGGTCACCATGTAGGCGTTCATTATTTGGACT
CGCATGTTGCTCGTTCGCGTATTTTCATAACAGGACTCATTTCATTCATT
CGTGCCGTGGACCGTGAAAACGAAGGTTTGTGTTGCCAGCACCAGAGATT
CGGTTGCTTGTTTGTACATGCCGATTTTGCCCGTCAACTTGGTTCGTGTC
TGAGCTCCATCGACCGCGTCTTTTTCTTGGCCGGTAACGTGTACGTAGGT
TATGTGCCTTTCTGTTGCCGTGGCCAACGTCGAGCAGCCGAAGAATGAGA
TCGAGCTGAACGTCCAGCTTGCCGCCAACTTCCTCGCCTCCTTGCTGAAA
AAGAACTGGCAGAACATCAAGGTAAATGTCTTCGTTTTTCGGTCTCATGC
TAATATTGGGAATTCGTGAAGATGTTCAGGAAAATGTAGGAAAATATATG
TTTACCCAGTGTACACCAGACCGTGCGCATGCCAATGAGTTTGTCCCGGC
TTCGTCCTGCATTAATGAATGACAATCTCGTTTCTAGGTGATGTACGTGA
AGAGCACCATGGGCCCCGTTCACCAGATCTACTTCTAGGTCTCCGCTGCC
GTTAGGCAGATGCTGTCCCCTTCCTCTGCACCAGCACCGTCTCGTTGGTG
GGGGGGGGGGAGGATCACAGCCACTTATTGTCTACACTTACCATTCAAGT
TGAATGGATGTTTTTCAGGGGCAAAATCTTGGGCCTTTTCGAAAATGTCT
TGACCCATGTTGGGCAATTTTGGAAGGGTGCAAGTGCTTTTGTTCATGGA
ATACACTCCACAGGGCTTGTTTGGGAGCTCGACAGCTTGCTTCTATTGTG
GGAACCGAAAGACCCATACTGGACGGGAGAGGTGGTTTTTTCGCCGATAC
CACCTTTTCATTGAAAACGAGGACTTAATAAAATGTTGACGCATTAAATT
CAGGTTTTGGGTGAACGCCAAAATTCGGGGTGTACAGGGATAAGATAGTA
TGCAACACCACACTGTCCGTGAGGATCGCTCATGGTTTGGTAATCGTGCT
GGTACGTTTGTCCCATGCTGGACAGAGTGTGGCCTTGAAACCAATACTGG
CGACGAATAAGTTGGTTGAAAGCACATGAGGAACAGTCACATGCCGAGAA
ATATTCCGCACATAACTATAAATGCGATATAATCATGTATTGAATGGTCA
GTAAGTCCTGATACTTGCGTGGAACATGTTCCCAGTAAATTAATCCACGA
CAAGTCCTCACAAGAACTTTATTACTGCTTAAATCGGGATGAATGCTGAA
TATACCA
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Coding sequence (CDS) from alignment at H-paniculata_contig1428:19495..23951-

>mRNA_H-paniculata_contig1428.2592.1 ID=mRNA_H-paniculata_contig1428.2592.1|Name=mRNA_H-paniculata_contig1428.2592.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1386bp|location=Sequence derived from alignment at H-paniculata_contig1428:19495..23951- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACTAGCAAGCTGAATGGCGACCTTGTAGCTAAGGCTGTGGATGAGAT
CCTCTCATACTCAGCGGGTGAGACCTACAAGAAGGGCGACACTGAAGTCG
TCGGCAAGAAGCGAAAGTTCACAGAGTCCATCGAGCTCCAGATGACTAGC
AAGCTGAATGGCGACCTTGTAGCTAAGGCTGTGGATGAGATCCTCTCATA
CTCAGCGGGTGAGACCTACAAGAAGGGCGACACTGAAGTCGTCGGCAAGA
AGCGAAAGTTCACAGAGTCCATCGAGCTCCAGGTGACCCTGAAGAACTAT
GACCCCCAGCGCGACAAGCGTTTTTCTGGGACGTTCAAGTTGCCCACCAT
TCCCCGGTGACCCTGAAGAACTATGACCCCCAGCGCGACAAGCGTTTTTC
TGGGACGTTCAAGTTGCCCACCATTCCCCGCCCGCGCATGAAGCTCTGCA
TGCTTGGTAACGCCGTGCACTGTGAACAGCCCGCGCATGAAGCTCTGCAT
GCTTGGTAACGCCGTGCACTGTGAACAGGCGGAGCAAATCGGTCTTGACC
ACATGTCAGTGGAGGACCTCAAGAAGTTCAACAAGAACAAGAACTTGATC
AAGAAGTTCGCGAAGAAGTACGATGCCTTCCTCGCTTCCGACTCCCTTAT
CAAGCAGGCGGAGCAAATCGGTCTTGACCACATGTCAGTGGAGGACCTCA
AGAAGTTCAACAAGAACAAGAACTTGATCAAGAAGTTCGCGAAGAAGTAC
GATGCCTTCCTCGCTTCCGACTCCCTTATCAAGCAGATCCCGCGTCTGTT
GGGTCCCGGTCTGACGAAGGCTGGTAAGTTCCCCACCCTGGTGAACGCTG
GTGATAACCTTCAGAGCAAGGTGGACACTGTTCGTGCCACGATCAAGTTC
CAGATGAAGAAGATCCCGCGTCTGTTGGGTCCCGGTCTGACGAAGGCTGG
TAAGTTCCCCACCCTGGTGAACGCTGGTGATAACCTTCAGAGCAAGGTGG
ACACTGTTCGTGCCACGATCAAGTTCCAGATGAAGAAGGTTATGTGCCTT
TCTGTTGCCGTGGCCAACGTCGAGCAGCCGAAGAATGAGATCGAGCTGAA
CGTCCAGCTTGCCGCCAACTTCCTCGCCTCCTTGCTGAAAAAGAACTGGC
AGAACATCAAGGTTATGTGCCTTTCTGTTGCCGTGGCCAACGTCGAGCAG
CCGAAGAATGAGATCGAGCTGAACGTCCAGCTTGCCGCCAACTTCCTCGC
CTCCTTGCTGAAAAAGAACTGGCAGAACATCAAGGTGATGTACGTGAAGA
GCACCATGGGCCCCGTTCACCAGATCTACTTCTAGGTGATGTACGTGAAG
AGCACCATGGGCCCCGTTCACCAGATCTACTTCTAG
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