mRNA_H-paniculata_contig1426.2581.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1426.2581.1
Unique NamemRNA_H-paniculata_contig1426.2581.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1426.2581.1 vs. uniprot
Match: D8LC93_ECTSI (CCHC-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC93_ECTSI)

HSP 1 Score: 137 bits (344), Expect = 1.920e-38
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 1 
Query:    1 MPATAGRVRMPHGNRVSSSSALKMTGIWTNTIGYDPYAAEGGGADAEDEANAYEQAQGLMALAKLSNQG 207
            MPATAGRVRMPHGNRVSSSSALKMTGIWTNTIGYDPYAAEGGGADAEDEANA+EQAQGLMALAKLSNQG
Sbjct:    1 MPATAGRVRMPHGNRVSSSSALKMTGIWTNTIGYDPYAAEGGGADAEDEANAFEQAQGLMALAKLSNQG 69
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BLAST of mRNA_H-paniculata_contig1426.2581.1 vs. uniprot
Match: A0A835YWX5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWX5_9STRA)

HSP 1 Score: 117 bits (294), Expect = 1.890e-31
Identity = 62/72 (86.11%), Postives = 63/72 (87.50%), Query Frame = 1 
Query:    1 MPATAGRVRMPHGNRVSSSSALKMTGIWTNTIGYDPYAAEGG---GADAEDEANAYEQAQGLMALAKLSNQG 207
            MPATAGRVRMPH NRVSSSSALKMTGIWTNTIGYDPYAAEGG    A A D  NAYEQAQGLMALAKLSN+G
Sbjct:    1 MPATAGRVRMPHNNRVSSSSALKMTGIWTNTIGYDPYAAEGGEAAAAAAADAENAYEQAQGLMALAKLSNEG 72
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BLAST of mRNA_H-paniculata_contig1426.2581.1 vs. uniprot
Match: A0A2D4C9D1_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C9D1_PYTIN)

HSP 1 Score: 104 bits (260), Expect = 1.220e-27
Identity = 52/69 (75.36%), Postives = 58/69 (84.06%), Query Frame = 1 
Query:    1 MPATAGRVRMPHGNRVSSSSALKMTGIWTNTIGYDPYAAEGGGADAEDEANAYEQAQGLMALAKLSNQG 207
            MPATAGRVRMPH NR+ SS+ALKMTGIW NTIGYDPYAAEG     +   ++YEQA+GLMALAKLSNQG
Sbjct:    1 MPATAGRVRMPHNNRMHSSAALKMTGIWKNTIGYDPYAAEGEEQQGQVSQSSYEQAKGLMALAKLSNQG 69
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BLAST of mRNA_H-paniculata_contig1426.2581.1 vs. uniprot
Match: A0A421EW16_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421EW16_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 8.750e-26
Identity = 51/67 (76.12%), Postives = 56/67 (83.58%), Query Frame = 1 
Query:    1 MPATAGRVRMPHGNRVSSSSALKMTGIWTNTIGYDPYAAEGGGADAEDEANAYEQAQGLMALAKLSN 201
            MPATAGRVRMPH NR+ SS+ALKMTGIW +TIGYDPYAAEG     E   ++YEQAQGLMALAKLSN
Sbjct:    1 MPATAGRVRMPHNNRMHSSAALKMTGIWKDTIGYDPYAAEG--EKQEKSESSYEQAQGLMALAKLSN 65
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BLAST of mRNA_H-paniculata_contig1426.2581.1 vs. uniprot
Match: A0A3F2RFL8_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RFL8_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 3.660e-25
Identity = 51/67 (76.12%), Postives = 56/67 (83.58%), Query Frame = 1 
Query:    1 MPATAGRVRMPHGNRVSSSSALKMTGIWTNTIGYDPYAAEGGGADAEDEANAYEQAQGLMALAKLSN 201
            MPATAGRVRMPH NR+ SS+ALKMTGIW +TIGYDPYAAEG     E   ++YEQAQGLMALAKLSN
Sbjct:    1 MPATAGRVRMPHNNRMHSSAALKMTGIWKDTIGYDPYAAEG--EKQEKSESSYEQAQGLMALAKLSN 65
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BLAST of mRNA_H-paniculata_contig1426.2581.1 vs. uniprot
Match: A0A2P4YHG3_9STRA (Zinc ion binding protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YHG3_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 2.410e-24
Identity = 50/67 (74.63%), Postives = 55/67 (82.09%), Query Frame = 1 
Query:    1 MPATAGRVRMPHGNRVSSSSALKMTGIWTNTIGYDPYAAEGGGADAEDEANAYEQAQGLMALAKLSN 201
            MPATAGRVRMPH NR+ SS+ALKMTGIW +TIGYDPYAAEG     E    +YEQA+GLMALAKLSN
Sbjct:    1 MPATAGRVRMPHNNRMHSSAALKMTGIWKDTIGYDPYAAEG--EKKETSETSYEQAKGLMALAKLSN 65
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BLAST of mRNA_H-paniculata_contig1426.2581.1 vs. uniprot
Match: A0A8K1FHX2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FHX2_PYTOL)

HSP 1 Score: 100 bits (248), Expect = 3.060e-24
Identity = 52/67 (77.61%), Postives = 57/67 (85.07%), Query Frame = 1 
Query:    1 MPATAGRVRMPHGNRVSSSSALKMTGIWTNTIGYDPYAAEGGGADAEDEANAYEQAQGLMALAKLSN 201
            MPA+AGRVRMPH NR+ SS+ALKMTGIWTNTIGYDPYAAEG     E   ++YEQAQGLMALAKLSN
Sbjct:    1 MPASAGRVRMPHNNRMHSSAALKMTGIWTNTIGYDPYAAEGE-EKKEVSQSSYEQAQGLMALAKLSN 66
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BLAST of mRNA_H-paniculata_contig1426.2581.1 vs. uniprot
Match: A0A0W8C9S2_PHYNI (CAX-interacting protein 4 n=17 Tax=Phytophthora TaxID=4783 RepID=A0A0W8C9S2_PHYNI)

HSP 1 Score: 97.4 bits (241), Expect = 3.670e-23
Identity = 50/67 (74.63%), Postives = 54/67 (80.60%), Query Frame = 1 
Query:    1 MPATAGRVRMPHGNRVSSSSALKMTGIWTNTIGYDPYAAEGGGADAEDEANAYEQAQGLMALAKLSN 201
            MPATAGRVRMPH NR+ SS+ LKMTGIW NTIGYDPYAAEG     E    +YEQA+GLMALAKLSN
Sbjct:    1 MPATAGRVRMPHNNRMHSSATLKMTGIWXNTIGYDPYAAEGE-KQGETSETSYEQAKGLMALAKLSN 66
[Close]
BLAST of mRNA_H-paniculata_contig1426.2581.1 vs. uniprot
Match: A0A329RX20_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329RX20_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 4.020e-23
Identity = 50/67 (74.63%), Postives = 54/67 (80.60%), Query Frame = 1 
Query:    1 MPATAGRVRMPHGNRVSSSSALKMTGIWTNTIGYDPYAAEGGGADAEDEANAYEQAQGLMALAKLSN 201
            MPATAGRVRMPH NR+ SS+ LKMTGIW NTIGYDPYAAEG     E    +YEQA+GLMALAKLSN
Sbjct:    1 MPATAGRVRMPHNNRMHSSATLKMTGIWKNTIGYDPYAAEGE-QQGETSETSYEQAKGLMALAKLSN 66
[Close]
BLAST of mRNA_H-paniculata_contig1426.2581.1 vs. uniprot
Match: A0A3M6VM93_9STRA (CCHC-type domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VM93_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 1.440e-22
Identity = 49/69 (71.01%), Postives = 55/69 (79.71%), Query Frame = 1 
Query:    1 MPATAGRVRMPHGNRVSSSSALKMTGIWTNTIGYDPYAAEGGGADAEDEANAYEQAQGLMALAKLSNQG 207
            MPAT+GRVRMPH NR+ SS+ALKMTGIW NTIGYDPYAAE      E    +YEQA+GLM LAKLSN+G
Sbjct:   15 MPATSGRVRMPHNNRMHSSAALKMTGIWKNTIGYDPYAAED--EKKETTETSYEQAKGLMTLAKLSNKG 81
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1426.2581.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LC93_ECTSI1.920e-3898.55CCHC-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A835YWX5_9STRA1.890e-3186.11Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A2D4C9D1_PYTIN1.220e-2775.36Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A421EW16_9STRA8.750e-2676.12Uncharacterized protein n=2 Tax=Phytophthora kerno... [more]
A0A3F2RFL8_9STRA3.660e-2576.12Uncharacterized protein n=2 Tax=Phytophthora kerno... [more]
A0A2P4YHG3_9STRA2.410e-2474.63Zinc ion binding protein n=1 Tax=Phytophthora palm... [more]
A0A8K1FHX2_PYTOL3.060e-2477.61Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A0W8C9S2_PHYNI3.670e-2374.63CAX-interacting protein 4 n=17 Tax=Phytophthora Ta... [more]
A0A329RX20_9STRA4.020e-2374.63Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A3M6VM93_9STRA1.440e-2271.01CCHC-type domain-containing protein n=1 Tax=Perono... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1426contigH-paniculata_contig1426:2471..2677 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score139.0
Seed ortholog evalue8.1e-31
Seed eggNOG ortholog2880.D8LC93
Preferred nameSREK1IP1
KEGG koko:K11493
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0042802,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464
EggNOG free text desc.zinc ion binding
EggNOG OGsKOG2985@1,KOG2985@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-14_005630.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03019,ko03036
Exons1
Model size207
Cds size207
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929134.9651227-CDS-H-paniculata_contig1426:2470..26771622929134.9651227-CDS-H-paniculata_contig1426:2470..2677Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1426 2471..2677 -
1691480744.5866668-CDS-H-paniculata_contig1426:2470..26771691480744.5866668-CDS-H-paniculata_contig1426:2470..2677Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1426 2471..2677 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1426.2581.1prot_H-paniculata_contig1426.2581.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1426 2471..2677 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1426.2581.1

>prot_H-paniculata_contig1426.2581.1 ID=prot_H-paniculata_contig1426.2581.1|Name=mRNA_H-paniculata_contig1426.2581.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=69bp
MPATAGRVRMPHGNRVSSSSALKMTGIWTNTIGYDPYAAEGGGADAEDEA
NAYEQAQGLMALAKLSNQG
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mRNA from alignment at H-paniculata_contig1426:2471..2677-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1426.2581.1 ID=mRNA_H-paniculata_contig1426.2581.1|Name=mRNA_H-paniculata_contig1426.2581.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=207bp|location=Sequence derived from alignment at H-paniculata_contig1426:2471..2677- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCAGCCACTGCGGGGAGAGTGCGGATGCCGCACGGCAACCGTGTGAG
TAGTAGCTCCGCGCTGAAGATGACGGGGATCTGGACCAACACCATCGGGT
ATGACCCCTACGCGGCGGAAGGAGGAGGGGCTGATGCTGAGGACGAGGCG
AACGCTTACGAGCAAGCGCAGGGGCTCATGGCTTTGGCTAAGCTTTCCAA
TCAGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig1426:2471..2677-

>mRNA_H-paniculata_contig1426.2581.1 ID=mRNA_H-paniculata_contig1426.2581.1|Name=mRNA_H-paniculata_contig1426.2581.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=414bp|location=Sequence derived from alignment at H-paniculata_contig1426:2471..2677- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCAGCCACTGCGGGGAGAGTGCGGATGCCGCACGGCAACCGTGTGAG
TAGTAGCTCCGCGCTGAAGATGACGGGGATCTGGACCAACACCATCGGGT
ATGACCCCTACGCGGCGGAAGGAGGAGGGGCTGATGCTGAGGACGAGGCG
AACGCTTACGAGCAAGCGCAGGGGCTCATGGCTTTGGCTAAGCTTTCCAA
TCAGGGGATGCCAGCCACTGCGGGGAGAGTGCGGATGCCGCACGGCAACC
GTGTGAGTAGTAGCTCCGCGCTGAAGATGACGGGGATCTGGACCAACACC
ATCGGGTATGACCCCTACGCGGCGGAAGGAGGAGGGGCTGATGCTGAGGA
CGAGGCGAACGCTTACGAGCAAGCGCAGGGGCTCATGGCTTTGGCTAAGC
TTTCCAATCAGGGG
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