mRNA_H-paniculata_contig14243.2574.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14243.2574.1
Unique NamemRNA_H-paniculata_contig14243.2574.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14243.2574.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14243contigH-paniculata_contig14243:4450..6063 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size295
Cds size282
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14243.2574.1prot_H-paniculata_contig14243.2574.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14243 4462..6063 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929133.99552-UTR-H-paniculata_contig14243:4449..44611622929133.99552-UTR-H-paniculata_contig14243:4449..4461Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14243 4450..4461 -
1691480744.1043699-UTR-H-paniculata_contig14243:4449..44611691480744.1043699-UTR-H-paniculata_contig14243:4449..4461Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14243 4450..4461 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929134.006307-CDS-H-paniculata_contig14243:4461..47121622929134.006307-CDS-H-paniculata_contig14243:4461..4712Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14243 4462..4712 -
1691480744.1238143-CDS-H-paniculata_contig14243:4461..47121691480744.1238143-CDS-H-paniculata_contig14243:4461..4712Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14243 4462..4712 -
1622929134.0163193-CDS-H-paniculata_contig14243:6032..60631622929134.0163193-CDS-H-paniculata_contig14243:6032..6063Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14243 6033..6063 -
1691480744.1339204-CDS-H-paniculata_contig14243:6032..60631691480744.1339204-CDS-H-paniculata_contig14243:6032..6063Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14243 6033..6063 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14243.2574.1

>prot_H-paniculata_contig14243.2574.1 ID=prot_H-paniculata_contig14243.2574.1|Name=mRNA_H-paniculata_contig14243.2574.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=94bp
DWRLQSSRVQGRIWTRNGADKHHVRNVTLGLYLGGLHSFLPQATCGRDPC
REFDEPRFVNVNFSEATLESDGVPCCLIRNEIYPIISVCQRQR*
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mRNA from alignment at H-paniculata_contig14243:4450..6063-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14243.2574.1 ID=mRNA_H-paniculata_contig14243.2574.1|Name=mRNA_H-paniculata_contig14243.2574.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1614bp|location=Sequence derived from alignment at H-paniculata_contig14243:4450..6063- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACTGGCGCCTTCAATCTTCTCGGGTACAAGGTACGTGTGGGTTGGTGTG
AAATGCTGCCAGATAACGAAATACTCTGAACGTGATTATAATTGCCTTCA
CTAGAAGTGACCTGAGGGGAGGGAGTTTGGTGTGCCACTGGTCTGCCTGC
AGGTGGAGAGGAGATCTGAGGCTGGTATGGTGGCCCTGATGGCCCTCGGT
AGTTAATAATGAACACGGCGAGATCAAGTAATGTGGCTGTTTCTACGTTG
GAGGTATAAGGCCGAGTAGGTAGTTGGTCCTTTAGATCATCTACTTTCTT
TTATTAGTCTTCCTTCATTTATTAATATCGATATTGTCATGGTGACGATC
GTTATCACTACTAATAATTGTTTTTTGCAGTAGAAACGGTTCTGATTCTA
GTCGGGGTCATTGCAAGGTTGTTACATGTGTTGGCATGTGAACTTGTACT
GTTTGGTGACTGGTACTTTCGTGTGTGGGACTGTTTTGTCATGTAACATG
GCCTTGGAGGAAGACCTCCAACTCCTGATGAAGTTATTACACAATTCATA
GTACATATTCGTCTCATATGTATGTATGTATATACACTCCCCCAATCCCA
TGAGTCTGCGACGTTCAGGGTGTAACATGTTGCATTGACCTCCGAATCAA
AAACGATTTTGTGTGTTGGATTCCGTGGTGTTTTTAATATCAATTTTATT
CTTAGTAGCTTTTCTCATTCCCATTCATACATCATTCTATCGCCGCGTCG
AAAGCCTCTTGGTCGATTTTGACCGATTTTGGCAGATTTCTCGCGTGCTG
CCTTTTCTTGGTTTCGGTGTGCTGTACCTCGAAACTGGTAGCTCCTAGCG
TCTTCCAGACTTGATTGTACCCCCTAAAGAGGCTTTGCCACACCCTCTCG
AGGGTTGCCGCGTCGTAGGAATTGTACATGCTCCTTACCCTGTCCGCAAG
GCCGTCTATCGTACCGTAACGCTCTCTTCAAACTGTACTTTTCGGAGATG
CAAAGAAGCCCAAATGGTTGATGTTGAGATCTCGTGACTGCGCAGGCTGA
GTTACGAGATTAATTTCCGCCCCCTGCCCCTCCCGAGTTCGTTAAGCTTC
CACGGTGTGCCTTTCTCAGTTTGGGGGGTCGCTCCGCCCTGCTGCGCGAC
CACTTCTTCACCCTCCAACCATGGCATCTTCTTTTATTCAATCCTGAGAT
AAAAGGATCCTTTTACCACTTCTGGTAAAACTCGGCGTCAATGTTCACGT
CGAATTCGTATTGCTGCTTCCGTTCATGCCGGACCAAACTCCTCTGCGCC
TTCTTGATTACGCAAATACGCCAAATTTCGATTTTTTTGTCGAAATCGCA
GGAAGGATCTGGACGCGAAACGGCGCAGATAAACATCACGTTAGGAATGT
GACACTAGGCCTGTACCTTGGTGGACTCCACTCTTTCCTCCCCCAGGCAA
CATGCGGGCGCGATCCCTGTCGTGAATTTGATGAACCACGCTTCGTGAAT
GTGAACTTTTCAGAAGCCACTCTTGAAAGTGATGGGGTCCCTTGCTGCTT
GATCCGGAATGAAATCTACCCGATTATTTCGGTGTGTCAGCGACAGAGAT
AAGGTATTGGGCGC
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Coding sequence (CDS) from alignment at H-paniculata_contig14243:4450..6063-

>mRNA_H-paniculata_contig14243.2574.1 ID=mRNA_H-paniculata_contig14243.2574.1|Name=mRNA_H-paniculata_contig14243.2574.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=564bp|location=Sequence derived from alignment at H-paniculata_contig14243:4450..6063- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACTGGCGCCTTCAATCTTCTCGGGTACAAGGACTGGCGCCTTCAATCTT
CTCGGGTACAAGGAAGGATCTGGACGCGAAACGGCGCAGATAAACATCAC
GTTAGGAATGTGACACTAGGCCTGTACCTTGGTGGACTCCACTCTTTCCT
CCCCCAGGCAACATGCGGGCGCGATCCCTGTCGTGAATTTGATGAACCAC
GCTTCGTGAATGTGAACTTTTCAGAAGCCACTCTTGAAAGTGATGGGGTC
CCTTGCTGCTTGATCCGGAATGAAATCTACCCGATTATTTCGGTGTGTCA
GCGACAGAGATAAGAAGGATCTGGACGCGAAACGGCGCAGATAAACATCA
CGTTAGGAATGTGACACTAGGCCTGTACCTTGGTGGACTCCACTCTTTCC
TCCCCCAGGCAACATGCGGGCGCGATCCCTGTCGTGAATTTGATGAACCA
CGCTTCGTGAATGTGAACTTTTCAGAAGCCACTCTTGAAAGTGATGGGGT
CCCTTGCTGCTTGATCCGGAATGAAATCTACCCGATTATTTCGGTGTGTC
AGCGACAGAGATAA
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