mRNA_H-paniculata_contig1423.2568.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1423.2568.1
Unique NamemRNA_H-paniculata_contig1423.2568.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1423.2568.1 vs. uniprot
Match: D8LUC6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LUC6_ECTSI)

HSP 1 Score: 153 bits (387), Expect = 5.080e-41
Identity = 110/264 (41.67%), Postives = 145/264 (54.92%), Query Frame = 2
Query:  107 APLSREVKLLADIFRMFDLDGSGEIDLGEIAKAFKSTGKFTDETRAQLEAHFAFMDSDGSGKVSFDEFRSAVGQRNLACRDYQHQQEYQSLGLALTQNLAVYRRHRLHKTFERMQEAEPGT----LNHQFELLRQAQAMSTFALKLGPPTG-KDYQSGSGG---KLGTKAPVTRRAE----------RRREVRAREETNALERVLRGGGPKNQLRSLP----HHHRRVNPRELMVADDDIRPNIWGKRR-----PAARFLRSLP 817
            +P S   +++ D+F MFD DGSGEI+L E+AKAFK+TGK TDETRAQLEAHF FM            FR A+G   +A R+YQHQQ + SLG+ L QNL VYRRH L++ FE M++  PG+    L  QF+ L ++  MSTFALK G   G  D   G GG   +L  +   ++ A           R+ E+  + E   L   L+ G  + QLR LP     H R V  +E  VAD   R    G++R     P  R L+ +P
Sbjct:   13 SPPSPRKQIVIDVFNMFDTDGSGEIELEEMAKAFKATGKLTDETRAQLEAHFEFMXXXXXXXXXXXXFREALGHGEIAFRNYQHQQAFYSLGVTLCQNLVVYRRHVLNREFESMKQQPPGSAVGGLEDQFDCLVRSLMMSTFALKGGDSGGGNDKGKGGGGHKEQLSQEGGCSKYASKSLNGSDDQARKHELLRKREARVLAHALKVGQTRRQLRPLPASRGQHLRAVVRKE--VADIWTRRENHGEQRGSQASPHRRALKKVP 274          
BLAST of mRNA_H-paniculata_contig1423.2568.1 vs. uniprot
Match: A0A367K386_RHIST (Uncharacterized protein (Fragment) n=1 Tax=Rhizopus stolonifer TaxID=4846 RepID=A0A367K386_RHIST)

HSP 1 Score: 50.1 bits (118), Expect = 8.710e-5
Identity = 25/64 (39.06%), Postives = 39/64 (60.94%), Query Frame = 2
Query:  134 LADIFRMFDLDGSGEIDLGEIAKAFKSTGKFTDETRAQLEAHFAFMDSDGSGKVSFDEFRSAVG 325
            L + F++FD DG+G ID  E+ K   S  +    T  +L+A     DS+G GK+SF+EF++ +G
Sbjct:    2 LQEAFKVFDADGNGVIDREELHKVMSSLNETL--TEEELDAMIKEADSNGDGKISFEEFKAMMG 63          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1423.2568.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LUC6_ECTSI5.080e-4141.67Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A367K386_RHIST8.710e-539.06Uncharacterized protein (Fragment) n=1 Tax=Rhizopu... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1423contigH-paniculata_contig1423:263..7602 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score60.5
Seed ortholog evalue1.4e-06
Seed eggNOG ortholog7739.XP_002593925.1
KEGG koko:K02183
KEGG Pathwayko04014,ko04015,ko04016,ko04020,ko04022,ko04024,ko04070,ko04114,ko04218,ko04261,ko04270,ko04371,ko04626,ko04713,ko04720,ko04722,ko04728,ko04740,ko04744,ko04745,ko04750,ko04910,ko04912,ko04915,ko04916,ko04921,ko04922,ko04924,ko04925,ko04970,ko04971,ko05010,ko05031,ko05034,ko05133,ko05152,ko05167,ko05200,ko05214,ko05418,map04014,map04015,map04016,map04020,map04022,map04024,map04070,map04114,map04218,map04261,map04270,map04371,map04626,map04713,map04720,map04722,map04728,map04740,map04744,map04745,map04750,map04910,map04912,map04915,map04916,map04921,map04922,map04924,map04925,map04970,map04971,map05010,map05031,map05034,map05133,map05152,map05167,map05200,map05214,map05418
Hectar predicted targeting categoryother localisation
EggNOG free text desc.calmodulin
EggNOG OGs38ETU@33154,3BAEQ@33208,3CUJJ@33213,COG5126@1,KOG0027@2759
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-14_004470.1
COG Functional cat.T
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko03036,ko04131,ko04147
Exons6
Model size926
Cds size819
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1423.2568.1prot_H-paniculata_contig1423.2568.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1423 348..7580 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929132.78382-UTR-H-paniculata_contig1423:262..3471622929132.78382-UTR-H-paniculata_contig1423:262..347Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1423 263..347 -
1691480743.6006057-UTR-H-paniculata_contig1423:262..3471691480743.6006057-UTR-H-paniculata_contig1423:262..347Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1423 263..347 -
1622929132.910164-UTR-H-paniculata_contig1423:7580..76021622929132.910164-UTR-H-paniculata_contig1423:7580..7602Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1423 7581..7602 -
1691480743.6774137-UTR-H-paniculata_contig1423:7580..76021691480743.6774137-UTR-H-paniculata_contig1423:7580..7602Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1423 7581..7602 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929132.796468-CDS-H-paniculata_contig1423:347..4311622929132.796468-CDS-H-paniculata_contig1423:347..431Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1423 348..431 -
1691480743.6145167-CDS-H-paniculata_contig1423:347..4311691480743.6145167-CDS-H-paniculata_contig1423:347..431Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1423 348..431 -
1622929132.809064-CDS-H-paniculata_contig1423:1913..20301622929132.809064-CDS-H-paniculata_contig1423:1913..2030Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1423 1914..2030 -
1691480743.626292-CDS-H-paniculata_contig1423:1913..20301691480743.626292-CDS-H-paniculata_contig1423:1913..2030Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1423 1914..2030 -
1622929132.8190923-CDS-H-paniculata_contig1423:4092..43681622929132.8190923-CDS-H-paniculata_contig1423:4092..4368Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1423 4093..4368 -
1691480743.640153-CDS-H-paniculata_contig1423:4092..43681691480743.640153-CDS-H-paniculata_contig1423:4092..4368Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1423 4093..4368 -
1622929132.8312538-CDS-H-paniculata_contig1423:4658..47351622929132.8312538-CDS-H-paniculata_contig1423:4658..4735Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1423 4659..4735 -
1691480743.6509616-CDS-H-paniculata_contig1423:4658..47351691480743.6509616-CDS-H-paniculata_contig1423:4658..4735Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1423 4659..4735 -
1622929132.845718-CDS-H-paniculata_contig1423:6165..63531622929132.845718-CDS-H-paniculata_contig1423:6165..6353Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1423 6166..6353 -
1691480743.661386-CDS-H-paniculata_contig1423:6165..63531691480743.661386-CDS-H-paniculata_contig1423:6165..6353Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1423 6166..6353 -
1622929132.893917-CDS-H-paniculata_contig1423:7503..75801622929132.893917-CDS-H-paniculata_contig1423:7503..7580Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1423 7504..7580 -
1691480743.6697927-CDS-H-paniculata_contig1423:7503..75801691480743.6697927-CDS-H-paniculata_contig1423:7503..7580Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1423 7504..7580 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1423.2568.1

>prot_H-paniculata_contig1423.2568.1 ID=prot_H-paniculata_contig1423.2568.1|Name=mRNA_H-paniculata_contig1423.2568.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=273bp
MKNKSRSTTSGGLPLSTHNGADVLNNRGAPLSREVKLLADIFRMFDLDGS
GEIDLGEIAKAFKSTGKFTDETRAQLEAHFAFMDSDGSGKVSFDEFRSAV
GQRNLACRDYQHQQEYQSLGLALTQNLAVYRRHRLHKTFERMQEAEPGTL
NHQFELLRQAQAMSTFALKLGPPTGKDYQSGSGGKLGTKAPVTRRAERRR
EVRAREETNALERVLRGGGPKNQLRSLPHHHRRVNPRELMVADDDIRPNI
WGKRRPAARFLRSLPSMQDCSV*
back to top

mRNA from alignment at H-paniculata_contig1423:263..7602-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1423.2568.1 ID=mRNA_H-paniculata_contig1423.2568.1|Name=mRNA_H-paniculata_contig1423.2568.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7340bp|location=Sequence derived from alignment at H-paniculata_contig1423:263..7602- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGAGGAGACGTCTCAAGTAGACATGAAGAACAAAAGTCGCAGCACCACAA GCGGCGGTCTTCCTCTGTCCACGCACAACGGGGCGGATGTCTTGAACAAG TAAGTCATCGAGAGTGCGGTAAAATAAAGGATGTCTATCTGGTACGGTCG TCAAGCAAGGGAAAGCTATCTGGAGCAACAACCTGAAAAGTATGAGTACA ATACACCTGACGGACGATAGTACGAGGTTGGGTGGTTTTTACACCTGTAC CGTCGGAGCCCGAACGAACAATGAAGAGACCTGACAGCCCCGCGGCGAAA CAGCCGCGTTTAGGGAGGGTGCTTTTGACGAGGGCGGGGGGTGGCATCCG ATCTCGTAGTGCTGGAGTACGGTAGCGGATTGTATTCACAATACCAAGAC TCAGGCCAATCATGAACGTTTGTTCACCTAGCAACGGCCAATCAAGAACG TGTCGCCTCCTGTACATAGGTCAAGTTATTTTGGAGTCACAGAATACCTA CACGATACCTCTGGCAGTTTAGGGGGTACGGGGGTACGAGCAAAACGTGC AGTCTCACTTGGTCTGATTGCGTTTTGTGGGCGCTAAAGATGGGTAGTAT CGACAGCGTGGACGAGAGGAATGATAGCAGTGCATAATATGCCCGAGCAT CTGGTTACCCTGACCAACAACGACAAAGTCCAGTTTTGCGATGAATATTT CTACACGATCTGCGGGTGTCGGAATAGAGCCGCGTGATATTCGCGTCCTA GTGTTTTGATGAAATATTCCGGTGTGGGGCTTTATGCGGAACATATCCCC TATACAATCAGTCGCTCATGGTGTGATTTTTCACGTTTCGATCAAGTAAG TGCTGCTGTCGCAGAACGCAAAACTATGCTAATTTCTGTCTTTGTATCTG CAATAATTTCATCATTGTTTGCACTCTGTGAGAGCTTCCTATCCCCGCAA TTCATGTCAGGGGCGTTTGTCACGAAGTGAAATTCCGAAGGGATTTTGGT CTGTTTTCCGTAAGCCTTGGGACAGGGGCATACAATTTATTGCGTGTCTT GTCATTGTACATGATGATTTTATGCGTAAGTCCTCGAGGACACTACAACG GTTGTATGTACTGCCAATACTACTGTCCATCTATTCGGCTACGTTCTAAC GGCAGCCTGAAACTTGAGTCGAAGTAAGGCGCCATTCTCGAACGAGTGCC AGAAAACAGCAACAATCCAACAAATGTTCCATCGTGTGTCCATGAATAGT CGAGGTGCACCATTAAGTCGCGAAGTGAAGCTACTGGCGGATATTTTCAG GATGTTCGATCTGGACGGGTCGGGCGAGATCGACCTCGGGGAAATAGCCA AAGCTTTCAAGTCGACAGGCAAGTTCACGGACGAGACACGGGCACAGCTT GAGGCTCACTTCGCTTTCATGGACAGCGATGGGTCAGGTGCGATTGATCG ACAGGATGAACTCTATTTCACTCCAAGTAGTTGTTATTGTGTGGAATTTG CTACATATACAAATACAGGATGCCGTAACTCTTGCATAATTCTACAAGAA CTGCAGCAAGTACTTGAGTACAGTAGTGGACCTGCAATAAGGTGGGTGTT TTTGGTTTGTCACGACTTTTTGCTCAATAAGGCGGATTGTGCTTTCGTCA TAACCCGCCTTGTCGCGGACCCCTCCGCAAAAGACATGGCGGGTTTTGTA TTGTTCCGCCACCACCCCGCCTTATTTCAAACAAGCTCATCACCCAACAC AAACAGCAGCACAGCAGTGTACTCGCCATGCCATGAGTCGTAGGAGGTGT TTCTTGCAGGATTCAGTGTAAAGTCGATACGCAACACAAGTCGCGTGAGG TGACATACGGAGGGGGGGGGTTTCCTGCTGTGGTATTGGTGGTTGCTGTA TCTGTTTTCGTCCTTTGTTCGTTCAGTGAAGTACCATAGACCATTTTTGT TTGTTTTCTCCCCATTTCCAGGTTCAGCGCTTGTTGAGTATTTCTCGTTT GGGGATCATTACCCATTGATTATTTTTTTCCCTTTTTCTTCTGGAGTTCT GTGTACTGTACGTACTTGGATCACTACTGGATTTGAGGTACAATTATATT CGAGAATATCGGGAGCATCACCATCTTTAAACATGTAGTTTTATGGAAAT ATGAAATGCAGCTCGCAGTTGCATCCCAACGCTCTGGTAGGTAGTTCAAG GGGAGGTGTGATCAGGAGTTTGGTTTTTCCCAAATCAGAAAAAAAAAAGT GCAGCGGAGTAGGATAACTTGAAAAGGTAGACGGCAAAAACGACCTCGAA CAAATACAACGATATGCTACGCTGGATGGGCTTATGAATATGGGCTCTGC TTTCACTCACACAGGCCCAAATCGCGTTTGGCGACGTAACACGCAATAAG GCGGGTGCTTTTGGCTTGTCACTATGCGGCCTTATTGCGGGTCCCCTACT GTACATTAATATCACTCAGAGCATGGACTGAAAAGAAGAGCGATTTCGTC GGTTCCGATATACCAACTTCTTCTATTGGTTTGTGGCTACGCTGTGCACG CTAGACAAGCAGCTACAATCCCAAGCTGGTGGTAAAACATGTTTTAAACT TTGGGCTTTATTGTCTCTCTTCTGTAGCGGTCGTTCAATATTGAAGCTTC TCCCTTGTGCTTCAGTACAACGGAAGCGAGCAGATATATTGTTGAACGTC ACAAAATAGAGCGCAAGCGTGAGGATGGCATGTAAAATCCCGCGTCCCGT CTTTTGTGGAACAGTTCACTTCGCCAGACGTGATGGCATGCCATAAGAGG AAGTGTTTTCCATAACGTACCATGCTACTCTTTGAAATTTTGCCATCAAA CTTCACACTTTTTTCAGGGAAAGTGTCGTTCGATGAATTTCGCTCAGCGG TGGGCCAGAGAAATCTTGCGTGTCGTGACTACCAACACCAACAGGCGAGT GGAAATTAGTCTGGTCAAAGAGCCCTAAGACCAGCATCGTTGATGTGTTT ATCAAAAATCATGCCTCATTTCCTGTCAAGAAGAATTGCAAGAAGAGCTA GCCAAGTAATCTTGTTTTGAGAAGATTCTCTTGGCGTATTGGGCACATTG GCATTGCTTCAGCTGATATACCGACTTGCGTCAAGGAACAACACTTATTC TCGTCAAATACAATTTTGTCGTCGTACATTGAACAACTGACTTTATCCCA ACAACAACCATGCCTGTATTCTATCCATATGCAGGAATACCAGTCTTTAG GTCTTGCCCTGACTCAAAATCTTGCGGTCTATCGACGACACAGGCTACAC AAAACGTTTGAAAGGATGCAGGAAGCAGAACCGGGAACGCTCAATCATCA ATTTGAGCTTCTCAGACAAGCGCAAGCGATGAGCACATTTGCGCTTAAAC TTGGACCACCAACAGGCAAGGACTATCAAAGTGGCAGCGGGGGGAAGTTG GGCACAAAAGCTCCGGTGACAAGACGAGCGGAACGACGTAGGGAAGTACG AGCGAGGGAGGTGCGCGGAAGGCTACTACGGGTGCTGACGTTTTTGTGGG CTGGGCGCGAGGGGAGGGTTCGGAACGCGTGTTTAATTAGCGTTTCCTGT CGCAACTGTCTTGGGATTTTTTATTAATAGTTAACAAGAACACCGGGTTA AGTCTATGCCCTTGAAGTCATCTGTTGCCATTCTATTCACGTTGTACCCC TCAACTACAGATCACCGCGCTCTCAAAGCAATGGGGCTACGGGCTATTCA TCCTGAACAAATCATCTGTTGACGCTGCGCTTAAACCACGCGATCACAAG TTTAATCCAAAATGAAACCTGTTCCAGGTGGCGACTACCACAAGCGCAAT GTACACTATGATATTATTCATCAGGGAGGACGGAGGGAGTGAGGTATTGA CGTACACGTTTGCCTTGAAGAAGCAAAAGGTTAACCCTGTCTAGGAAATC TAACGTATGTACTGTTTCCTCTTTGGCTAGTGCGTATTTACAAGAAGAAT GTCCCCGATGTATTTCAATGGAGACAAGCCACAACGCTTGCGACTGGCTG CGTCCTGGCCGCGTTGCCTGGGCGTTATTTAACGAAACGATTTTCACGCC GTTGGGTCCCTCGCCGCAGTGACACCATACACCACGAGGACACCATCGTG TTGTGATGATGATGATTTACTACGATGACACCAGGATATCCCGAAACGAG TTTCCACGGTCACGGAGTCGCCAATGAGCACGGTAGCCGCCTTCGAGTTT CGTTAAAAAGAATTCATGACGCGAGCCAAATCCTAAGCTTGACCCTACTC AGACGATCTTAGTGTGCGTTGGCAGAGGGACATCCGACCTAAATGCGTTG GCAAAGTTTTTTTTTTTGCCCTCTAGCGGAGGTTACGTCTTACCTAAAAC TACGTTGGCAAAGTATGTGTGTGTGCATTGGCGGAGCATATATCAGACTT GTCTGTGTTGGAGGAGCTTTCACTTTGTTCATCCTTGTGAACCACACATC AGAAAGTTGTGTAACACGTGCTGAGTGCAAGCCTTACCCGCGAGACGGGC CCAGACCTGTGTAAACCTAGTGAAGTTTTGGAGTAATTCTCTCCCTGTGA CCGAAAAATACGCAGGAGAAGTATAGGAAGGAAACCAGAAGCTGATCTGA TCAAGAAGTTGGCAGTGGTTCAGATGAAAGTAGCGTTGGTGATACTAGGG TGTTCGCAGCGCACCAGCAATTCACCAGTAACGGCAGAGTTGGTCATACA CTCCCTGAGAGTCTATCGAGCGGGATATCATAGTAGAGAAAGTGTAGAAA ATATTAAAATTTCTAAAGATGAGACGATGAAGAGGACGAACATGAGTGGC TTTTAGAAGGAATCAGAGGGTGCCATTGGATCTTAGAGAAGAAGAAGCGC TGAGAAGAGAAGCTGCAAGAAAGGAAGGTTAGGAAGTATATCGAAGTCTG GATCGAAGGATAAGGTTAAAGGGGTACCTACATAGGCCATTAGACGTCGG CACACAGTTGAAAGTCAAGTTGAGAACGGGGGGATCTTGACCTCAAGGAT GGCAGGAAGCGATTCAGGAAAGCAGAAGAGGACGATGATATGTTCAAGCG TGACTATCGTAGTGCGTGCGAAGACCGAATTCACACGATGGGAGAATGCC CCCTATATGCAAAAGAGGGAAGAATATTTATGAATGACTTGGGGAAGATC GGCATATGCGATAGAGGTATTTGAATACTGGAATTACGAAAAGAAGGCGA TAGCGGATCTAGGACATCAAAATTGATCTGAGACGGCGAGGGTCGAGGTA GACAGGGTAAAACAAATTTCGTGCACATTTGACAAACGGAGGAAATGGTG ATAGGCAATCGTAAATCAATCTGATAGGAACAAAGCTCTGTTCTTCTGAG GATGCCTGGTCATCGGTCAAACAACTACGAGATGCAAAAAATATGAGTAC GTTCCCTGTCACCGTTTTTAGAAACCCCACCCTAAATCATCATGGTGTGC AAATTGTTTTCGACAAATAATTCAAACCTCGTGTGTGGTCTCGTCGAAAA CAAATAGCACACCGTTATGCAGGAAACGAATGCGTTGGAGCGTGTCCTTC GCGGCGGGGGACCTAAAAACCAACTCAGGTCGCTGCCACACCATCATCGG CGGGTGAATCCGCGAGAGCTAATGGTTGCTGACGATGATGCCCATATGAC CACAACCAAGGTGCCGATGCGCTGCTCATAAATATTTATCTTGTATCACT GATATGAAGCGCTTTCAGCAACTTGCTTCAATTGGTAATGACTAGACAAC TAATAGTGCATTCGCACATCGAGACCAACGTTCACTCGAAGATACCCACG CCCCCTGTTTGTCCTTAAAACTGTTGATCATCCCGCGTTGCATAATTACA TACTTGAGTTACACCGTCCGCGTACTAACGCCTAGACAAAAGGGGTCTTG AGACCACTTCTTATCGGGTTTTTTTTTCGGGGTAGATATGTCCTTCGGGC AATTTTGCCCCAAAACGCGCCGGGTACAAGTTACCGGAGAGTTTTTCTCG GTAAAAGTGACCGCCAGATTCGCTTGACCCCCTCGAGCAGCCGTGGTGGG CAGAAAAGAGGCCCCCTCTCGCCTATTTTGGCGGGAGGGCAAAAGTTCCG AAACCCGTATATTTCGGGTTGATTTATATGGTGCATACTTGCAAAGGGTC CCACCACGATGATGGTATCCCATCACCGCACGCTCTTTATTACGCGCGCA TCACCTCTTACGTCGCCGCTGCAACACCCAAGCTAGATGCCAGGTACACG ATGCCGAGGTAGTTTCTATGAGACTGCAGCCTTGTAGCAGAAGCTGAAGT CTCCACCGCTGGGCAGCGATGGGAATTTTCAGCTGCTGCCGCAAGGCTGT CCCCTGTTTCCGCCGTTGTCATGAATGACGACGGCTAGGATAATCATCCA TCCAGCTCACCCTTCGTACGTTTCCCGGAAGTAGCCGATTATAGCATGTA ATATTTGATCTAGAGAACGACAAGCTTAGGCCAAAGCCCATGCGACAGTA AAGAGCAATCGAGGTGCCGTGACACCTCGTGGTGGAACATGCATGGCATG CATTTTCCCATACTCCACAGTCCGATTTATTTTTTGACTGTTACTTTTGA CTGTTGTTGATCTCGGGGCCCATCGCACAATTAGCGCGTATAATTTTTTT GAGTTTTATTTCATTCCAAGCAAAAGCGACCCATGGAAAAAGACCCACCC CCCAAAAATCCTCTGTATGAAGTGGCTTTGAGCCTCTTTTGGCACAGTAT TGCAGTGAAATCTGTTTATAAAAGGCTAGAGAATATAGCATGGCCGTACG TAAGCAGTGGCCTGCTTTGGCCCCTGCAATAGAGGACGTTTTCACCCTTA CAACCTAAAACGCTTCCGCTGGGATCGACCCTGCGCTTATGCTGAATACT ATCCTATAAACTGTGCACCACAGCTGTCTAACGTATGGAAATGGGATTTT CGTCTAATTTGATGTGGTTCGAACAAAAATTGAGGTGCTCGCTCAGGAAC GTTATAGCCTTGTGCAAAGTGAGGATCTACTACGAATCCTTCCTGCACGA AGATTGACACTTGTTTTTATCTGCCATTGCTGTTGTTGTCGCTCTGTCAC CCCTCGTGCGCACCCTTACAGATTCGTCCAAATATTTGGGGGAAACGGCG GCCGGCAGCTCGCTTCCTCAGGTCATTACCATCGATGCAAGACTGTTCTG TATGAGCTGCGCAGGCTAATATTTTCTCCTCGCCTCTCGGGCACGGATAG TAGCCTCTGCTGGATTATTTTAACTTATCGCATTGATACC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig1423:263..7602-

>mRNA_H-paniculata_contig1423.2568.1 ID=mRNA_H-paniculata_contig1423.2568.1|Name=mRNA_H-paniculata_contig1423.2568.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1638bp|location=Sequence derived from alignment at H-paniculata_contig1423:263..7602- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGAACAAAAGTCGCAGCACCACAAGCGGCGGTCTTCCTCTGTCCAC
GCACAACGGGGCGGATGTCTTGAACAAATGAAGAACAAAAGTCGCAGCAC
CACAAGCGGCGGTCTTCCTCTGTCCACGCACAACGGGGCGGATGTCTTGA
ACAATCGAGGTGCACCATTAAGTCGCGAAGTGAAGCTACTGGCGGATATT
TTCAGGATGTTCGATCTGGACGGGTCGGGCGAGATCGACCTCGGGGAAAT
AGCCAAAGCTTTCAAGTCGACAGGCAAGTTCACGGACGAGACACGGGCAC
AGCTTGAGGCTCACTTCGCTTTCATGGACAGCGATGGGTCAGTCGAGGTG
CACCATTAAGTCGCGAAGTGAAGCTACTGGCGGATATTTTCAGGATGTTC
GATCTGGACGGGTCGGGCGAGATCGACCTCGGGGAAATAGCCAAAGCTTT
CAAGTCGACAGGCAAGTTCACGGACGAGACACGGGCACAGCTTGAGGCTC
ACTTCGCTTTCATGGACAGCGATGGGTCAGGGAAAGTGTCGTTCGATGAA
TTTCGCTCAGCGGTGGGCCAGAGAAATCTTGCGTGTCGTGACTACCAACA
CCAACAGGGAAAGTGTCGTTCGATGAATTTCGCTCAGCGGTGGGCCAGAG
AAATCTTGCGTGTCGTGACTACCAACACCAACAGGAATACCAGTCTTTAG
GTCTTGCCCTGACTCAAAATCTTGCGGTCTATCGACGACACAGGCTACAC
AAAACGTTTGAAAGGATGCAGGAAGCAGAACCGGGAACGCTCAATCATCA
ATTTGAGCTTCTCAGACAAGCGCAAGCGATGAGCACATTTGCGCTTAAAC
TTGGACCACCAACAGGCAAGGACTATCAAAGTGGCAGCGGGGGGAAGTTG
GGCACAAAAGCTCCGGTGACAAGACGAGCGGAACGACGTAGGGAAGTACG
AGCGAGGGAGGAATACCAGTCTTTAGGTCTTGCCCTGACTCAAAATCTTG
CGGTCTATCGACGACACAGGCTACACAAAACGTTTGAAAGGATGCAGGAA
GCAGAACCGGGAACGCTCAATCATCAATTTGAGCTTCTCAGACAAGCGCA
AGCGATGAGCACATTTGCGCTTAAACTTGGACCACCAACAGGCAAGGACT
ATCAAAGTGGCAGCGGGGGGAAGTTGGGCACAAAAGCTCCGGTGACAAGA
CGAGCGGAACGACGTAGGGAAGTACGAGCGAGGGAGGAAACGAATGCGTT
GGAGCGTGTCCTTCGCGGCGGGGGACCTAAAAACCAACTCAGGTCGCTGC
CACACCATCATCGGCGGGTGAATCCGCGAGAGCTAATGGTTGCTGACGAT
GATGAAACGAATGCGTTGGAGCGTGTCCTTCGCGGCGGGGGACCTAAAAA
CCAACTCAGGTCGCTGCCACACCATCATCGGCGGGTGAATCCGCGAGAGC
TAATGGTTGCTGACGATGATATTCGTCCAAATATTTGGGGGAAACGGCGG
CCGGCAGCTCGCTTCCTCAGGTCATTACCATCGATGCAAGACTGTTCTGT
ATGAATTCGTCCAAATATTTGGGGGAAACGGCGGCCGGCAGCTCGCTTCC
TCAGGTCATTACCATCGATGCAAGACTGTTCTGTATGA
back to top