mRNA_H-paniculata_contig14207.2560.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14207.2560.1
Unique NamemRNA_H-paniculata_contig14207.2560.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig14207.2560.1 vs. uniprot
Match: A0A4Z0ABW0_9AGAM (Uncharacterized protein (Fragment) n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Z0ABW0_9AGAM)

HSP 1 Score: 53.5 bits (127), Expect = 5.310e-5
Identity = 24/48 (50.00%), Postives = 35/48 (72.92%), Query Frame = 2 
Query:  314 EALKGPEAEKWRAAMEEGWGVLVEYGTWDSEDPGRLPAGQKAIHTKWT 457
            E ++GP+ EKW +AM+E + VL++ GTW+     RLPAG KAI ++WT
Sbjct:  999 EVVQGPDQEKWESAMQEEYDVLLKTGTWEKV---RLPAGCKAIGSRWT 1043
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14207.2560.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A4Z0ABW0_9AGAM5.310e-550.00Uncharacterized protein (Fragment) n=1 Tax=Hericiu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14207contigH-paniculata_contig14207:437..1520 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size560
Cds size411
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14207.2560.1prot_H-paniculata_contig14207.2560.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14207 1049..1459 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929131.7906818-UTR-H-paniculata_contig14207:436..4651622929131.7906818-UTR-H-paniculata_contig14207:436..465Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14207 437..465 -
1691480743.0837822-UTR-H-paniculata_contig14207:436..4651691480743.0837822-UTR-H-paniculata_contig14207:436..465Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14207 437..465 -
1622929131.804561-UTR-H-paniculata_contig14207:989..10481622929131.804561-UTR-H-paniculata_contig14207:989..1048Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14207 990..1048 -
1691480743.0942829-UTR-H-paniculata_contig14207:989..10481691480743.0942829-UTR-H-paniculata_contig14207:989..1048Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14207 990..1048 -
1622929131.8327057-UTR-H-paniculata_contig14207:1459..15201622929131.8327057-UTR-H-paniculata_contig14207:1459..1520Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14207 1460..1520 -
1691480743.113383-UTR-H-paniculata_contig14207:1459..15201691480743.113383-UTR-H-paniculata_contig14207:1459..1520Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14207 1460..1520 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929131.8169565-CDS-H-paniculata_contig14207:1048..14591622929131.8169565-CDS-H-paniculata_contig14207:1048..1459Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14207 1049..1459 -
1691480743.1037595-CDS-H-paniculata_contig14207:1048..14591691480743.1037595-CDS-H-paniculata_contig14207:1048..1459Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14207 1049..1459 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14207.2560.1

>prot_H-paniculata_contig14207.2560.1 ID=prot_H-paniculata_contig14207.2560.1|Name=mRNA_H-paniculata_contig14207.2560.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=137bp
MKDMVLAAKDALSAGTTAPASRGNPMKESGTEAQRPRGRSPIRTWARVRE
TREEDPGATARVAKMEGNRNLIETVSKGQPKFAAEALKGPEAEKWRAAME
EGWGVLVEYGTWDSEDPGRLPAGQKAIHTKWTSSGN*
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mRNA from alignment at H-paniculata_contig14207:437..1520-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14207.2560.1 ID=mRNA_H-paniculata_contig14207.2560.1|Name=mRNA_H-paniculata_contig14207.2560.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1084bp|location=Sequence derived from alignment at H-paniculata_contig14207:437..1520- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCAAACCCATTTAGTGTTTTGAACGAAGACGATGATGGATGAAGTAACG
GGGACTCCAAGATGAAGGATATGGTGCTCGCAGCCAAAGACGCATTATCA
GCAGGGACGACCGCACCCGCGTCGCGGGGAAACCCCATGAAGGAGTCGGG
GACGGAGGCGCAGCGTCCGCGAGGTCGGTCACCAATACGAACATGGGCGA
GAGTAAGGGAAACTCGTGAAGAAGATCCAGGCGCTACCGCGCGGGTGGCA
AAAATGGAAGGCAATCGCAATCTTATAGAGACAGTATCTAAGGGGCAGCC
GAAATTCGCGGCAGAAGCATTAAAGGGTCCAGAGGCGGAAAAATGGCGTG
CGGCAATGGAGGAAGGATGGGGGGTGTTGGTGGAATACGGAACATGGGAC
AGCGAGGACCCGGGAAGATTACCGGCAGGGCAGAAGGCGATTCATACGAA
ATGGACTTCAAGCGGAAACTGAAGGAGGATGGCAGCGTGGCACGCTGCAA
GGCGCGACTGGTCGCTCAAAGTTTTTCACAGGTAATATCTTTGAAACCAG
TGCCCCCCTAGCTCGCATGTCGACTTTAAGTGCTGTTTTTAGCCTGGTCG
CCGAACACGATTTCGAATTAGAAGGCATGGACGTAGATGCGGCATATTTG
AACGCCCCGGTAGAAAAAGAGCTGTTTGTTGAGCTGTCCCCCGAGTTTCC
CCCTTTCTGCCGAGACATACCGTTTGTGCGCCGCCTGCGCAAAAGCCTGT
ATGGCCTCAAGCAAAGTGGCCGAAACCGGAATAACACTCTTGACGATTTT
CTTGCTGAGATTGGATTTGACCGTTCCACTACCGACTCATGCTTGTAGTT
GTCCCGCGACGATGGGGGAGAGACAAACCTCCTGGTGCCCGTCTATGTTG
ACGACCTGGTCATTGCTGGCCGTCGTGAGGAAGTAGACGAGTTCAAGCAT
ATCATAAGTCAGCGTTTTAAGATGAAAGACTTGGGCTCTCTCTCGCGCGT
GTTGGGAATAGAAGTACGACGTGACCGCCCTAATGGTATCATAACCATCT
CGCAGGATAACTGAGTCCGCGAGGTACGAAAACG
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Coding sequence (CDS) from alignment at H-paniculata_contig14207:437..1520-

>mRNA_H-paniculata_contig14207.2560.1 ID=mRNA_H-paniculata_contig14207.2560.1|Name=mRNA_H-paniculata_contig14207.2560.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=822bp|location=Sequence derived from alignment at H-paniculata_contig14207:437..1520- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGGATATGGTGCTCGCAGCCAAAGACGCATTATCAGCAGGGACGAC
CGCACCCGCGTCGCGGGGAAACCCCATGAAGGAGTCGGGGACGGAGGCGC
AGCGTCCGCGAGGTCGGTCACCAATACGAACATGGGCGAGAGTAAGGGAA
ACTCGTGAAGAAGATCCAGGCGCTACCGCGCGGGTGGCAAAAATGGAAGG
CAATCGCAATCTTATAGAGACAGTATCTAAGGGGCAGCCGAAATTCGCGG
CAGAAGCATTAAAGGGTCCAGAGGCGGAAAAATGGCGTGCGGCAATGGAG
GAAGGATGGGGGGTGTTGGTGGAATACGGAACATGGGACAGCGAGGACCC
GGGAAGATTACCGGCAGGGCAGAAGGCGATTCATACGAAATGGACTTCAA
GCGGAAACTGAATGAAGGATATGGTGCTCGCAGCCAAAGACGCATTATCA
GCAGGGACGACCGCACCCGCGTCGCGGGGAAACCCCATGAAGGAGTCGGG
GACGGAGGCGCAGCGTCCGCGAGGTCGGTCACCAATACGAACATGGGCGA
GAGTAAGGGAAACTCGTGAAGAAGATCCAGGCGCTACCGCGCGGGTGGCA
AAAATGGAAGGCAATCGCAATCTTATAGAGACAGTATCTAAGGGGCAGCC
GAAATTCGCGGCAGAAGCATTAAAGGGTCCAGAGGCGGAAAAATGGCGTG
CGGCAATGGAGGAAGGATGGGGGGTGTTGGTGGAATACGGAACATGGGAC
AGCGAGGACCCGGGAAGATTACCGGCAGGGCAGAAGGCGATTCATACGAA
ATGGACTTCAAGCGGAAACTGA
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