mRNA_H-paniculata_contig142.2553.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig142.2553.1 vs. uniprot
Match: A0A6H5K1D2_9PHAE (Beta_helix domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1D2_9PHAE) HSP 1 Score: 308 bits (790), Expect = 2.220e-100 Identity = 143/212 (67.45%), Postives = 172/212 (81.13%), Query Frame = 1 Query: 1 YATKQGFTVDGHLDSKEEEESFVDKCIWVEGLGEPTAQTYLGSTVETSLIGFVMDGMTIMNCGMECVRLRNWVTNSVITDNVIEDCGIYDYRFRFDGKIGEAVYVGTSSNQW--------TDGPDGSNYNLISGNMLRPRGNECVDVKEGASFNVIENNICVDQRDPESGCYDSRGNRNTFRYNSGEQCTGAGIRLGGHVVDGFTYGVDNDV 612 Y T +GFT+DG LD ++ EES+VDKCI+VEG PT T+ G VE++LIG V+DG+ I NCGMEC+R+RN+VTN+VI +N IE+CGIYD+RF+FDGKIGEA+Y+GTSSNQW T+GPDGSNYNL++GN L PRGNECVD+KEGA+ NV+E N C DQRD ESGCYDSRGN NTFRYN+ QC GAGIRLGGH +DGF YGVDN V Sbjct: 114 YVTLEGFTIDGQLDDEDVEESYVDKCIFVEGQAAPTMLTHQGQEVESALIGTVIDGLKIQNCGMECIRMRNFVTNAVIQNNDIENCGIYDFRFQFDGKIGEAIYIGTSSNQWEDGTGDRVTNGPDGSNYNLVTGNKLVPRGNECVDIKEGATMNVVEYNECEDQRDAESGCYDSRGNENTFRYNTAVQCLGAGIRLGGHTIDGFVYGVDNHV 325
BLAST of mRNA_H-paniculata_contig142.2553.1 vs. uniprot
Match: D8LJ42_ECTSI (FirrV-1-B30 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ42_ECTSI) HSP 1 Score: 303 bits (775), Expect = 3.720e-96 Identity = 141/212 (66.51%), Postives = 165/212 (77.83%), Query Frame = 1 Query: 1 YATKQGFTVDGHLDSKEEEESFVDKCIWVEGLGEPTAQTYLGSTVETSLIGFVMDGMTIMNCGMECVRLRNWVTNSVITDNVIEDCGIYDYRFRFDGKIGEAVYVGTSSNQWTDG--------PDGSNYNLISGNMLRPRGNECVDVKEGASFNVIENNICVDQRDPESGCYDSRGNRNTFRYNSGEQCTGAGIRLGGHVVDGFTYGVDNDV 612 + T +GFT+DG +D + E+SFVDKCI+VEG P Y G TVET+LIG V+D M I NCGMEC+R+RN+VTN+VI DN IEDCGIYDYR+ FDGK+GEA+Y+GTSSNQW DG PDG NYNL++GN L PRGNECVD+KEGA+ NV+E N C DQRD ESGCYDSRGN NTFRYN+ E C G GIRLGGH +DG TYGVDN V Sbjct: 160 WVTLRGFTIDGQIDDADHEDSFVDKCIFVEGQAAPEDVEYDGRTVETALIGTVIDSMKIQNCGMECIRMRNFVTNTVIIDNDIEDCGIYDYRYTFDGKVGEAIYIGTSSNQWADGADGRVTNGPDGCNYNLVTGNKLVPRGNECVDIKEGATMNVVEYNDCEDQRDVESGCYDSRGNENTFRYNTAENCLGGGIRLGGHEIDGITYGVDNHV 371
BLAST of mRNA_H-paniculata_contig142.2553.1 vs. uniprot
Match: D8LJ29_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ29_ECTSI) HSP 1 Score: 262 bits (669), Expect = 8.050e-85 Identity = 121/174 (69.54%), Postives = 144/174 (82.76%), Query Frame = 1 Query: 115 TYLGSTVETSLIGFVMDGMTIMNCGMECVRLRNWVTNSVITDNVIEDCGIYDYRFRFDGKIGEAVYVGTSSNQW--------TDGPDGSNYNLISGNMLRPRGNECVDVKEGASFNVIENNICVDQRDPESGCYDSRGNRNTFRYNSGEQCTGAGIRLGGHVVDGFTYGVDNDV 612 T+ G VE++LIG V+DG+ I NCGMEC+R+RN+VTN+VI +N IE+CGIYD+RF+FDGKIGEA+Y+GTSSNQW T+GPDGSNYNL++GN L PRGNECVD+KEGA+ NV+E N C DQRD ESGCYDSRGN NTFRYN+ QC GAGIRLGGH +DGF YGVDN V Sbjct: 3 THQGLEVESALIGTVIDGLKIQNCGMECIRMRNFVTNAVIQNNDIENCGIYDFRFQFDGKIGEAIYIGTSSNQWEDGTGDRVTNGPDGSNYNLVTGNELVPRGNECVDIKEGATMNVVEYNECEDQRDAESGCYDSRGNENTFRYNTAIQCLGAGIRLGGHTIDGFVYGVDNHV 176
BLAST of mRNA_H-paniculata_contig142.2553.1 vs. uniprot
Match: D7FXR9_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXR9_ECTSI) HSP 1 Score: 223 bits (569), Expect = 6.340e-69 Identity = 108/205 (52.68%), Postives = 145/205 (70.73%), Query Frame = 1 Query: 1 YATKQGFTVDGHLDSKEEEE-SFVDKCIWVEGLGEPTAQTYLGSTVETSLIGFVMDGMTIMNCGMECVRLRNWVTNSVITDNVIEDCGIYDYRFRFDGKIGEAVYVGTSSNQWTDGPDGSNYNLISGNMLRPRGNECVDVKEGASFNVIENNICVDQRDPESGCYDSRGNRNTFRYNSGEQCTGAGIRLGGHVVDGFTYGVDNDV 612 + T +GF+V+G + S + ++ S+V+KC++VEG G ++ L GFVM+ M + NCG ECVRL++ V N+ +T N I +CG++DY F + K GE VY+GTSS QWT+G D N N++S N++ GNECVD+KEG+S NVIE+N C DQ D ESGCYDSRG+ NTFRYN G +CTGAG+RLGG VDG YGV+N V Sbjct: 114 FITLKGFSVEGKIGSNDTDQASWVNKCVYVEGPGANSSAV---------LDGFVMEDMVVQNCGGECVRLKDSVVNAQVTGNTISNCGVHDYMFNSEDKNGEGVYIGTSSTQWTNGEDTCNGNVVSRNLISTSGNECVDIKEGSSGNVIEDNFCSDQLDAESGCYDSRGDGNTFRYNVGSECTGAGVRLGGWEVDGHQYGVNNSV 309
BLAST of mRNA_H-paniculata_contig142.2553.1 vs. uniprot
Match: A0A6H5KT05_9PHAE (Beta_helix domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KT05_9PHAE) HSP 1 Score: 216 bits (551), Expect = 8.250e-67 Identity = 99/204 (48.53%), Postives = 138/204 (67.65%), Query Frame = 1 Query: 1 YATKQGFTVDGHLDSKEEEESFVDKCIWVEGLGEPTAQTYLGSTVETSLIGFVMDGMTIMNCGMECVRLRNWVTNSVITDNVIEDCGIYDYRFRFDGKIGEAVYVGTSSNQWTDGPDGSNYNLISGNMLRPRGNECVDVKEGASFNVIENNICVDQRDPESGCYDSRGNRNTFRYNSGEQCTGAGIRLGGHVVDGFTYGVDNDV 612 + T +GF+VDG + +E ES+VDKC++VEG ++ + L GFVM + + NCG ECVRL++++ +VI+DNVI+DCG+ D+ + GK GE +YVGTSS QW+DGPD N N I+GN + P GNECVD+KEG++ ++E N C Q D +SGC+ SRG+ N FRYN+ C G G+R+GG VDG YG DN + Sbjct: 88 WVTLEGFSVDGKISDDDEAESYVDKCVFVEGTS---------TSGDERLEGFVMQDVYVQNCGDECVRLKSFIVGAVISDNVIQDCGVRDFVYGNSGKNGEGIYVGTSSTQWSDGPDECNDNTITGNTITPNGNECVDIKEGSTGTIVEENTCSGQLDEDSGCFGSRGDGNVFRYNTASDCLGVGVRIGGWEVDGHKYGQDNSI 282
BLAST of mRNA_H-paniculata_contig142.2553.1 vs. uniprot
Match: D7FXR8_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXR8_ECTSI) HSP 1 Score: 221 bits (564), Expect = 2.310e-66 Identity = 110/205 (53.66%), Postives = 141/205 (68.78%), Query Frame = 1 Query: 1 YATKQGFTVDGHLDSKEEEE-SFVDKCIWVEGLGEPTAQTYLGSTVETSLIGFVMDGMTIMNCGMECVRLRNWVTNSVITDNVIEDCGIYDYRFRFDGKIGEAVYVGTSSNQWTDGPDGSNYNLISGNMLRPRGNECVDVKEGASFNVIENNICVDQRDPESGCYDSRGNRNTFRYNSGEQCTGAGIRLGGHVVDGFTYGVDNDV 612 + T +GFTV+G + + + +E S+V+KC++VEG G ++ L GFVM+ M + NCG ECVRL++ V N+ + N I +CG++DY F K GE VY+GTSS QWT+G D N NL+SGN + GNECVD+KEGAS NVIE+NIC +Q D ESGCYDSRG+ NTFRYN G C GAG+RLGG VDG YGV N V Sbjct: 114 FITLKGFTVEGKIGTSDTDEASWVNKCVYVEGPGSQSSAV---------LDGFVMEDMIVQNCGGECVRLKDSVINAQVMGNTISNCGVHDYMFNSGDKNGEGVYIGTSSTQWTNGEDTCNDNLVSGNRISTSGNECVDIKEGASGNVIEDNICSEQLDAESGCYDSRGDGNTFRYNVGTDCMGAGVRLGGWEVDGHQYGVGNSV 309
BLAST of mRNA_H-paniculata_contig142.2553.1 vs. uniprot
Match: D7FZD2_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZD2_ECTSI) HSP 1 Score: 199 bits (505), Expect = 1.020e-57 Identity = 102/201 (50.75%), Postives = 134/201 (66.67%), Query Frame = 1 Query: 13 QGFTVDGHLDSKEEEESFVDKCIWVEGLGEPTAQTYLGSTVETSLIGFVMDGMTIMNCGMECVRLRNWVTNSVITDNVIEDCGIYDYRFRFDGKIGEAVYVGTSSNQWTDGP-DGSNYNLISGNMLRPRGNECVDVKEGASFNVIENNICVDQRDPESGCYDSRGNRNTFRYNSGEQCTGAGIRLGGHVVDGFTYGVDNDV 612 +GFTV+G + ++ E+S+V CI+V+G G ++ T L GFVM+ M + NCG ECVRL++ VTN+ I N I +CGI+DY F G+ V +GTSS++W DG D NL++GN++ NECVDVKEGA NVIE+N+C +Q D SGCY+SRGN N FR N+G C GAG+RLGG VDGF YGV N V Sbjct: 80 KGFTVEGQIGTEVTEDSYVLNCIYVQGPGSDSS---------TFLDGFVMEEMAVQNCGGECVRLKDGVTNAKIFSNTITNCGIHDYMFESGDMNGQGVCIGTSSDEWPDGEEDVCTNNLVAGNVIDTSANECVDVKEGAYGNVIEDNMCYNQLDINSGCYNSRGNDNIFRNNAGSDCLGAGVRLGGWEVDGFQYGVGNSV 271
BLAST of mRNA_H-paniculata_contig142.2553.1 vs. uniprot
Match: UPI00036AEC55 (right-handed parallel beta-helix repeat-containing protein n=1 Tax=Hahella ganghwensis TaxID=286420 RepID=UPI00036AEC55) HSP 1 Score: 192 bits (488), Expect = 9.530e-57 Identity = 104/210 (49.52%), Postives = 130/210 (61.90%), Query Frame = 1 Query: 1 YATKQGFTVDGHLDSKEEEESFVDKCIWVEGLGEPTAQTYLGSTVETSLIGFVMDGMTIMNCGMECVRLRNWVTNSVITDNVIEDCGIYDYRFRFDGKIGEAVYVGTSSNQWTDG------PDGSNYNLISGNMLRPRGNECVDVKEGASFNVIENNICVDQRDPESGCYDSRGNRNTFRYNSGEQCTGAGIRLGGHVVDGFTYGVDNDV 612 Y + FT+DG + S E F D ++V+G EP G T GFVM M++ N G ECVRLR +VT + I DN +CG+YD++F GK GEA+YVGTSSNQW DG PD SN+N I N GNECVD+KEGA +N++E NIC Q+DP S +DSRG+ N FRYN GAG+RLGG+ VDG YGV+N V Sbjct: 119 YIHLRNFTIDGQVGSGNTMEDFRDILVYVKG-NEPQQ----GPT------GFVMRAMSLKNAGGECVRLRYYVTEAEIFDNTFYNCGVYDFKFNNGGKNGEAIYVGTSSNQWDDGKNPTGGPDPSNHNWIHHNKFLTNGNECVDIKEGAEYNLVEYNICSGQQDPNSAGFDSRGDHNIFRYNVSHDNKGAGVRLGGNTVDGRQYGVNNQV 317
BLAST of mRNA_H-paniculata_contig142.2553.1 vs. uniprot
Match: Q6XM06_9PHYC (FirrV-1-B30 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM06_9PHYC) HSP 1 Score: 196 bits (497), Expect = 1.700e-55 Identity = 98/209 (46.89%), Postives = 135/209 (64.59%), Query Frame = 1 Query: 1 YATKQGFTVDGHLDSKEEEESFVDKCIWVEGLGEPTAQTYLGSTVETSLIGFVMDGMTIMNCGMECVRLRNWVTNSVITDNVIEDCGIYDYRFRFDGKIGEAVYVGTSSNQWTDG------PDGSNYNLISGNMLRPRGNECVDVKEGASFNVIENNICVDQRDPESGCYDSRGNRNTFRYNSGEQCTGAGIRLGGHVVDGFTYGVDND 609 Y T +GFTV G +S + +VDKCI+V G+ P + G E+S+ G +++ M + +CG EC+RLR++VT++ +T N IE CG +DY F GK GEA+YVGTSSNQW DG PD + Y I N++ + NECVDVKEG++ ++E N C +Q D S +DSR + TFRYN C GAGIR+GGH +DG TYG +N+ Sbjct: 111 YTTLRGFTVSGKRNSGNDPSDYVDKCIFVMGISSPEIERTSGIEYESSITGVIIEDMEVEDCGGECIRLRSFVTHAEVTGNRIERCGRHDYLFDGAGKNGEAIYVGTSSNQWNDGKNSKSGPDKTKYIWIHDNVIDTQANECVDVKEGSTDVLVEYNACSNQLDTNSAGFDSRTDDVTFRYNEVSNCAGAGIRIGGHKIDGKTYGENNE 319
BLAST of mRNA_H-paniculata_contig142.2553.1 vs. uniprot
Match: A0A6H5LEX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEX7_9PHAE) HSP 1 Score: 185 bits (470), Expect = 2.830e-53 Identity = 91/175 (52.00%), Postives = 121/175 (69.14%), Query Frame = 1 Query: 1 YATKQGFTVDGHLDSKEEEE-SFVDKCIWVEGLGEPTAQTYLGSTVETSLIGFVMDGMTIMNCGMECVRLRNWVTNSVITDNVIEDCGIYDYRFRFDGKIGEAVYVGTSSNQWTDGPDGSNYNLISGNMLRPRGNECVDVKEGASFNVIENNICVDQRDPESGCYDSRGNRNTFR 522 + T +GFTV+G + + + +E S+V+KC++VEG G ++ L GFVM+ M + NCG ECVRL++ V N+ +T N I +CG++D+ F K GE VY+GTSS QWT+G D N NL+ GN + GNECVD+KEGAS NV+ENNIC DQ D ESGCYDSRG+ NTFR Sbjct: 114 FITLKGFTVEGKVGTSDTDEASWVNKCVYVEGPGSQSSAV---------LDGFVMEDMIVQNCGGECVRLKDSVVNAQVTGNTISNCGVHDFMFNSGDKNGEGVYIGTSSTQWTNGEDTCNDNLVFGNRISTSGNECVDIKEGASGNVVENNICSDQLDAESGCYDSRGDGNTFR 279 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig142.2553.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig142.2553.1 >prot_H-paniculata_contig142.2553.1 ID=prot_H-paniculata_contig142.2553.1|Name=mRNA_H-paniculata_contig142.2553.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=204bp YATKQGFTVDGHLDSKEEEESFVDKCIWVEGLGEPTAQTYLGSTVETSLIback to top mRNA from alignment at H-paniculata_contig142:38372..40208+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig142.2553.1 ID=mRNA_H-paniculata_contig142.2553.1|Name=mRNA_H-paniculata_contig142.2553.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1837bp|location=Sequence derived from alignment at H-paniculata_contig142:38372..40208+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig142:38372..40208+ >mRNA_H-paniculata_contig142.2553.1 ID=mRNA_H-paniculata_contig142.2553.1|Name=mRNA_H-paniculata_contig142.2553.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1224bp|location=Sequence derived from alignment at H-paniculata_contig142:38372..40208+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |