mRNA_H-paniculata_contig142.2551.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig142.2551.1
Unique NamemRNA_H-paniculata_contig142.2551.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig142.2551.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig142contigH-paniculata_contig142:27264..27597 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size334
Cds size312
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929128.5369494-UTR-H-paniculata_contig142:27263..272851622929128.5369494-UTR-H-paniculata_contig142:27263..27285Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig142 27264..27285 +
1691480741.984459-UTR-H-paniculata_contig142:27263..272851691480741.984459-UTR-H-paniculata_contig142:27263..27285Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig142 27264..27285 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929128.5493543-CDS-H-paniculata_contig142:27285..275971622929128.5493543-CDS-H-paniculata_contig142:27285..27597Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig142 27286..27597 +
1691480742.0008898-CDS-H-paniculata_contig142:27285..275971691480742.0008898-CDS-H-paniculata_contig142:27285..27597Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig142 27286..27597 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig142.2551.1prot_H-paniculata_contig142.2551.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig142 27286..27597 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig142.2551.1

>prot_H-paniculata_contig142.2551.1 ID=prot_H-paniculata_contig142.2551.1|Name=mRNA_H-paniculata_contig142.2551.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=104bp
MCRGPERPKSPTTKTFHHETSLLLQWCNPVKLIRVAPTDGSTRVRKYPEK
TRDDRLDRQFTSILQIRSMATNLAYRSSMCTLQKSQSLDDGTVPHKSSSR
RDR*
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mRNA from alignment at H-paniculata_contig142:27264..27597+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig142.2551.1 ID=mRNA_H-paniculata_contig142.2551.1|Name=mRNA_H-paniculata_contig142.2551.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=334bp|location=Sequence derived from alignment at H-paniculata_contig142:27264..27597+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAAAGAGGTGCCAAAACTTCCATGTGTCGCGGTCCCGAGAGACCTAAAT
CACCGACGACGAAAACGTTTCATCATGAAACGTCGTTATTGTTGCAATGG
TGCAATCCCGTCAAATTGATCAGAGTTGCGCCCACGGACGGGTCCACCCG
TGTCCGTAAATACCCAGAAAAAACAAGAGACGACCGTCTAGACCGACAAT
TCACCTCAATCCTGCAAATAAGGTCGATGGCAACTAACTTAGCGTATCGG
TCTTCAATGTGCACGTTACAGAAATCACAGTCCTTGGATGATGGTACAGT
ACCTCACAAATCTTCATCTCGTCGGGATCGTTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig142:27264..27597+

>mRNA_H-paniculata_contig142.2551.1 ID=mRNA_H-paniculata_contig142.2551.1|Name=mRNA_H-paniculata_contig142.2551.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at H-paniculata_contig142:27264..27597+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGTCGCGGTCCCGAGAGACCTAAATCACCGACGACGAAAACGTTTCA
TCATGAAACGTCGTTATTGTTGCAATGGTGCAATCCCGTCAAATTGATCA
GAGTTGCGCCCACGGACGGGTCCACCCGTGTCCGTAAATACCCAGAAAAA
ACAAGAGACGACCGTCTAGACCGACAATTCACCTCAATCCTGCAAATAAG
GTCGATGGCAACTAACTTAGCGTATCGGTCTTCAATGTGCACGTTACAGA
AATCACAGTCCTTGGATGATGGTACAGTACCTCACAAATCTTCATCTCGT
CGGGATCGTTAGATGTGTCGCGGTCCCGAGAGACCTAAATCACCGACGAC
GAAAACGTTTCATCATGAAACGTCGTTATTGTTGCAATGGTGCAATCCCG
TCAAATTGATCAGAGTTGCGCCCACGGACGGGTCCACCCGTGTCCGTAAA
TACCCAGAAAAAACAAGAGACGACCGTCTAGACCGACAATTCACCTCAAT
CCTGCAAATAAGGTCGATGGCAACTAACTTAGCGTATCGGTCTTCAATGT
GCACGTTACAGAAATCACAGTCCTTGGATGATGGTACAGTACCTCACAAA
TCTTCATCTCGTCGGGATCGTTAG
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