mRNA_H-paniculata_contig1418.2538.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1418.2538.1
Unique NamemRNA_H-paniculata_contig1418.2538.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1418.2538.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1418contigH-paniculata_contig1418:8510..9105 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size490
Cds size282
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1418.2538.1prot_H-paniculata_contig1418.2538.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1418 8510..8898 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929127.0799744-CDS-H-paniculata_contig1418:8509..87401622929127.0799744-CDS-H-paniculata_contig1418:8509..8740Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1418 8510..8740 +
1691480741.3333752-CDS-H-paniculata_contig1418:8509..87401691480741.3333752-CDS-H-paniculata_contig1418:8509..8740Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1418 8510..8740 +
1622929127.106951-CDS-H-paniculata_contig1418:8847..88981622929127.106951-CDS-H-paniculata_contig1418:8847..8898Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1418 8848..8898 +
1691480741.34444-CDS-H-paniculata_contig1418:8847..88981691480741.34444-CDS-H-paniculata_contig1418:8847..8898Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1418 8848..8898 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929127.1242294-UTR-H-paniculata_contig1418:8898..91051622929127.1242294-UTR-H-paniculata_contig1418:8898..9105Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1418 8899..9105 +
1691480741.3544738-UTR-H-paniculata_contig1418:8898..91051691480741.3544738-UTR-H-paniculata_contig1418:8898..9105Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1418 8899..9105 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1418.2538.1

>prot_H-paniculata_contig1418.2538.1 ID=prot_H-paniculata_contig1418.2538.1|Name=mRNA_H-paniculata_contig1418.2538.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=94bp
VRQIAVAWATNRSNCSLAYEESISLDAAYKNTRNETPPHLSFDNGGFHEK
SKSKRLLALPLLSKQYPCQLLIAVNDKMSEKDNKRMFGILMQK*
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mRNA from alignment at H-paniculata_contig1418:8510..9105+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1418.2538.1 ID=mRNA_H-paniculata_contig1418.2538.1|Name=mRNA_H-paniculata_contig1418.2538.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=596bp|location=Sequence derived from alignment at H-paniculata_contig1418:8510..9105+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCAGACAAATCGCTGTCGCCTGGGCAACCAATAGAAGCAATTGCAGTCT
GGCTTACGAAGAGTCAATTAGTTTAGACGCTGCATACAAAAACACAAGAA
ATGAAACCCCGCCACACTTGAGCTTTGACAATGGCGGCTTCCACGAAAAA
TCGAAGTCGAAGCGCTTGTTGGCACTACCCCTGCTTTCGAAACAATATCC
ATGCCAACTTTTGATAGCAGTCAACGATAAGTCTATACAAACAGCTACTG
ACGATACTGCCAATTTATAGAGTACGCATCAGTTCACGAGAACATCTGCT
ACCTGGCTTTGAAATGGCGGAAGTAGCTTGTTAATATCATGAGCGAAAAA
GATAATAAAAGAATGTTCGGAATACTCATGCAAAAATAATCGCGTGCGGA
ACTTCGTCCAAGTCTTCGCAGTTTTATTTTTTCCAGGGATTTCCACACAG
GCGTTCTTGATCATACGTGTTTCCTTTTTTTCGGTGAAACGAAGTACAGC
AACCTGTTGGGGATGCAACTGTTACTTTATTTTATTTTGTTTTAAAGAAA
GGATATCCTATACATCCACCATATGAAACTTTATCTATCCCATAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig1418:8510..9105+

>mRNA_H-paniculata_contig1418.2538.1 ID=mRNA_H-paniculata_contig1418.2538.1|Name=mRNA_H-paniculata_contig1418.2538.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=564bp|location=Sequence derived from alignment at H-paniculata_contig1418:8510..9105+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCAGACAAATCGCTGTCGCCTGGGCAACCAATAGAAGCAATTGCAGTCT
GGCTTACGAAGAGTCAATTAGTTTAGACGCTGCATACAAAAACACAAGAA
ATGAAACCCCGCCACACTTGAGCTTTGACAATGGCGGCTTCCACGAAAAA
TCGAAGTCGAAGCGCTTGTTGGCACTACCCCTGCTTTCGAAACAATATCC
ATGCCAACTTTTGATAGCAGTCAACGATAAGGTCAGACAAATCGCTGTCG
CCTGGGCAACCAATAGAAGCAATTGCAGTCTGGCTTACGAAGAGTCAATT
AGTTTAGACGCTGCATACAAAAACACAAGAAATGAAACCCCGCCACACTT
GAGCTTTGACAATGGCGGCTTCCACGAAAAATCGAAGTCGAAGCGCTTGT
TGGCACTACCCCTGCTTTCGAAACAATATCCATGCCAACTTTTGATAGCA
GTCAACGATAAGATGAGCGAAAAAGATAATAAAAGAATGTTCGGAATACT
CATGCAAAAATAAATGAGCGAAAAAGATAATAAAAGAATGTTCGGAATAC
TCATGCAAAAATAA
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